EsuBft207_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft207_11a-0001
Unique Name	EsuBft207_11a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_358	contig	Scaffold_358:250386..252189 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FUY1
ProteomeId	EsuBft207_11
Protein domains	IPR004143
Protein domains	SSF55681
Protein domains	G3DSA
Protein domains	IPR020605
Protein domains	IPR000544
Protein domains	PTHR10993
Owner	apollo_admin@sb-roscoff.fr
Note	octanoyltransferase os:synechococcus (strain atcc 27144 pcc 6301 saug 1402 1) gn:lipb pe:3 sv:1 [Automatic annotation]
Nb exon	2
Max annot lvl	2759\|Eukaryota
Length	1389
Hectar predicted targeting category	other localisation
Evalue	9.03e-184
EggNOG OGs	COG0321@1\|root,KOG0325@2759\|Eukaryota
Ec32 ortholog description	Lipoyl-[acyl-carrier-protein]-protein-N-lipoyltransferase (Lipoate-protein ligase B)
Ec32 ortholog	Ec-01_008620.1
Date last modified	2016-06-14
Date creation	2016-06-14
KEGG rclass	RC00039,RC00992,RC02867
KEGG ko	ko:K03801
KEGG Reaction	R07766,R07769
KEGG Pathway	ko00785,ko01100,map00785,map01100
EC	2.3.1.181
Description	octanoyl transferase activity (acting on glycine-cleavage complex H protein)
COG category	H
BRITE	ko00000,ko00001,ko01000

Cross References

External references for this mRNA


Database	Accession
GO	0016415
GO	0009107
GO	0005737
GO	0004571

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft207_11a	EsuBft207_11a	Ectocarpus subulatus male Bft15b	gene	Scaffold_358 250386..252189 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft207_11a-0001-exon	agat-exon-57860	Ectocarpus subulatus male Bft15b	exon	Scaffold_358 250386..251030 +
EsuBft207_11a-0001-exon	EsuBft207_11a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_358 251446..252189 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft207_11a-0001-exon	agat-five_prime_utr-5244	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_358 250386..250751 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft207_11a-0001-cds	EsuBft207_11a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_358 250752..251030 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft207_11a-0001-exon	agat-three_prime_utr-8070	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_358 251986..252189 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft207_11a-0001	EsuBft207_11	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_358 250752..251985 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_358:250386..252189+
coding sequence from alignment at Scaffold_358:250386..252189+

spliced messenger RNA

>EsuBft207_11a-0001 ID=EsuBft207_11a-0001|Name=EsuBft207_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1389bp|location=Sequence derived from alignment at Scaffold_358:250386..252189+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTGCACAGCAGCGTGCAGCGGGTCCGGGTTCTCAGTTACTGCTGCTTGTG
TGTTTTTCTCATGTGGCATAGAGCGTGTCACAGCTTGCAGCGGCAGAGAA
ACCGGCTGTCACCTCAGGCACTGCCACCGCCGGCACGAGCACCATCAATC
TCGTCAATATCTCACCAACAGAGGCGGCGGCACCCGGTTGACACTCGAGT
TAGCAGCCGGAGGTGCCTTGTAGGGACATCAACACCACCACCACCACCAC
CACCACCACTATCACCACCACCACCACCTCGCAGGTGCCTCGTGTACAAC
ATCACAGGTGGTACCGTCCCTTACGACCGGGCATGGCTGTGGCAGCAGCG
CCTGCTGCACGAGCGCATGGCCTGGCAGCGAGAGGAATCTCCAAGCCAGG
ACTCGCACGACGTCCTTCTCATGCTCGAACACCCTCCCGTCTACACGCTC
GGGCGGGGCTCGTCCCTGGACCACCTGCGCTTCGACCCGACGGACCCTTC
GTCTCTGGACGGGAGAGAAGTCCGCCGGACGGAGAGGGGAGGCGAGGTGA
CCTGGCACGGTCCAGGGCAGGTGGTGGGGTATCCTGTGCTGGACCTCAAC
TTTCACAACAAGGACTTGCACTGGTACATGAGGCAACTGGAAGAGGTTGT
CATCCGAGTGCTCGGGAGATATGGCCTCGAGGGCGAGCGAGAAACGGAAC
ACACGGGCGTGTGGGTGGGCGGCGCCAAGGTCGCGGCCATCGGGCTGAAC
GCCAGCCGCTGGGTCACCTCGCACGGCTTCGCGCTCAACGTCAACCCGGA
CCTGAGCGCCTTCGAGGCTATCGTGCCTTGCGGCATCCAGGGTCGGCCTG
TCACGAGGCTGTGCGACCTCGTTGGTACCGAGACCTGGTTTCCGCCCTCG
GCGGAACAAATCGAGAACGCGGCACGCGTCGATGGAACAGATGTCACTGC
TTCGAACGCCGCGGATAACCATGCGGTCGACATGGGCTCCGTTCGGTCGC
TCGTGATGCAGGAGTTCGAGGGCGTGTTCGGCTTGAGGATAGAAGTCGTA
GACGTTGACGCTGCAGCAGATGGTAGCGGTGACGACGACTTGGAAAGAGA
GATCTTCCCGGCAGACTGCGAGCCGCAGCTGCTGGCGCGCCTACAAGCCG
ATAGCTTGCGACAGTTAGAGCTGACGAGGCGATGACGGCGCTGACTGACT
CCAAATAGTTGTTGGTATTTATGGTGCCATCTCACGTGTGTGGAAGATAG
CATCATCCGCCGTGCTGCGACGCACATTCGAAAGGGGTTGGCGTCGGGCT
TCGCGCGCAAAGCCGGGGATCCATCCGTGAAGATCGTGCAGGCAGATACA
GAACAAGCATTGCATACTTTGGTCTTCAAGGGCCAGCGA

protein sequence of EsuBft207_11a-0001

>EsuBft207_11 ID=EsuBft207_11|Name=EsuBft207_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=272bp
MAWQREESPSQDSHDVLLMLEHPPVYTLGRGSSLDHLRFDPTDPSSLDGR
EVRRTERGGEVTWHGPGQVVGYPVLDLNFHNKDLHWYMRQLEEVVIRVLG
RYGLEGERETEHTGVWVGGAKVAAIGLNASRWVTSHGFALNVNPDLSAFE
AIVPCGIQGRPVTRLCDLVGTETWFPPSAEQIENAARVDGTDVTASNAAD
NHAVDMGSVRSLVMQEFEGVFGLRIEVVDVDAAADGSGDDDLEREIFPAD
CEPQLLARLQADSLRQLELTRR

mRNA from alignment at Scaffold_358:250386..252189+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft207_11a-0001 ID=EsuBft207_11a-0001|Name=EsuBft207_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1804bp|location=Sequence derived from alignment at Scaffold_358:250386..252189+ (Ectocarpus subulatus male Bft15b)
GTGCACAGCAGCGTGCAGCGGGTCCGGGTTCTCAGTTACTGCTGCTTGTG
TGTTTTTCTCATGTGGCATAGAGCGTGTCACAGCTTGCAGCGGCAGAGAA
ACCGGCTGTCACCTCAGGCACTGCCACCGCCGGCACGAGCACCATCAATC
TCGTCAATATCTCACCAACAGAGGCGGCGGCACCCGGTTGACACTCGAGT
TAGCAGCCGGAGGTGCCTTGTAGGGACATCAACACCACCACCACCACCAC
CACCACCACTATCACCACCACCACCACCTCGCAGGTGCCTCGTGTACAAC
ATCACAGGTGGTACCGTCCCTTACGACCGGGCATGGCTGTGGCAGCAGCG
CCTGCTGCACGAGCGCATGGCCTGGCAGCGAGAGGAATCTCCAAGCCAGG
ACTCGCACGACGTCCTTCTCATGCTCGAACACCCTCCCGTCTACACGCTC
GGGCGGGGCTCGTCCCTGGACCACCTGCGCTTCGACCCGACGGACCCTTC
GTCTCTGGACGGGAGAGAAGTCCGCCGGACGGAGAGGGGAGGCGAGGTGA
CCTGGCACGGTCCAGGGCAGGTGGTGGGGTATCCTGTGCTGGACCTCAAC
TTTCACAACAAGGACTTGCACTGGTACATGAGGCAACTGGAAGAGGTGAT
GACTCCCGCGCGAGAGCTGCTGGGAACATGCTGGCTCTTTCGTGCACCAT
GGTATGGGCTGTCACCTTTCCATGCTCCTACTGTGTTGCGACTTGTTCTG
ATACGAACCCCGGCGTCACGTAGTATTTTCTGTAGCATATCTATTCTTGT
GCACCCCGCTACTGCTGTTGGCCCTCGTAGCGGCAGGATAAGGCTTGTGT
CGAGGTTGACCGTAAAGACATGCAGCAGCCACGCCCGTATCGACACAAGT
ACACCTGCGTTGTGACACGCACACCAAGAGTGCCTCCCAATTCCGCCCCC
TACCCTGCCTGTTGCATATCTGTTGCATTCGCACGCTTCCTCAATGTCCG
CGCACACCACTTTCGGCCCTCATCGTTTCTGGACCTTTAACGGTCGCTCA
ATACACAAAGGTTGTCATCCGAGTGCTCGGGAGATATGGCCTCGAGGGCG
AGCGAGAAACGGAACACACGGGCGTGTGGGTGGGCGGCGCCAAGGTCGCG
GCCATCGGGCTGAACGCCAGCCGCTGGGTCACCTCGCACGGCTTCGCGCT
CAACGTCAACCCGGACCTGAGCGCCTTCGAGGCTATCGTGCCTTGCGGCA
TCCAGGGTCGGCCTGTCACGAGGCTGTGCGACCTCGTTGGTACCGAGACC
TGGTTTCCGCCCTCGGCGGAACAAATCGAGAACGCGGCACGCGTCGATGG
AACAGATGTCACTGCTTCGAACGCCGCGGATAACCATGCGGTCGACATGG
GCTCCGTTCGGTCGCTCGTGATGCAGGAGTTCGAGGGCGTGTTCGGCTTG
AGGATAGAAGTCGTAGACGTTGACGCTGCAGCAGATGGTAGCGGTGACGA
CGACTTGGAAAGAGAGATCTTCCCGGCAGACTGCGAGCCGCAGCTGCTGG
CGCGCCTACAAGCCGATAGCTTGCGACAGTTAGAGCTGACGAGGCGATGA
CGGCGCTGACTGACTCCAAATAGTTGTTGGTATTTATGGTGCCATCTCAC
GTGTGTGGAAGATAGCATCATCCGCCGTGCTGCGACGCACATTCGAAAGG
GGTTGGCGTCGGGCTTCGCGCGCAAAGCCGGGGATCCATCCGTGAAGATC
GTGCAGGCAGATACAGAACAAGCATTGCATACTTTGGTCTTCAAGGGCCA
GCGA

Coding sequence (CDS) from alignment at Scaffold_358:250386..252189+

>EsuBft207_11a-0001 ID=EsuBft207_11a-0001|Name=EsuBft207_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=819bp|location=Sequence derived from alignment at Scaffold_358:250386..252189+ (Ectocarpus subulatus male Bft15b)
ATGGCCTGGCAGCGAGAGGAATCTCCAAGCCAGGACTCGCACGACGTCCT
TCTCATGCTCGAACACCCTCCCGTCTACACGCTCGGGCGGGGCTCGTCCC
TGGACCACCTGCGCTTCGACCCGACGGACCCTTCGTCTCTGGACGGGAGA
GAAGTCCGCCGGACGGAGAGGGGAGGCGAGGTGACCTGGCACGGTCCAGG
GCAGGTGGTGGGGTATCCTGTGCTGGACCTCAACTTTCACAACAAGGACT
TGCACTGGTACATGAGGCAACTGGAAGAGGTTGTCATCCGAGTGCTCGGG
AGATATGGCCTCGAGGGCGAGCGAGAAACGGAACACACGGGCGTGTGGGT
GGGCGGCGCCAAGGTCGCGGCCATCGGGCTGAACGCCAGCCGCTGGGTCA
CCTCGCACGGCTTCGCGCTCAACGTCAACCCGGACCTGAGCGCCTTCGAG
GCTATCGTGCCTTGCGGCATCCAGGGTCGGCCTGTCACGAGGCTGTGCGA
CCTCGTTGGTACCGAGACCTGGTTTCCGCCCTCGGCGGAACAAATCGAGA
ACGCGGCACGCGTCGATGGAACAGATGTCACTGCTTCGAACGCCGCGGAT
AACCATGCGGTCGACATGGGCTCCGTTCGGTCGCTCGTGATGCAGGAGTT
CGAGGGCGTGTTCGGCTTGAGGATAGAAGTCGTAGACGTTGACGCTGCAG
CAGATGGTAGCGGTGACGACGACTTGGAAAGAGAGATCTTCCCGGCAGAC
TGCGAGCCGCAGCTGCTGGCGCGCCTACAAGCCGATAGCTTGCGACAGTT
AGAGCTGACGAGGCGATGA