EsuBft207_24a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft207_24a-0001
Unique NameEsuBft207_24a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_358contigScaffold_358:92620..93153 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft207_24
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length53
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft207_24aEsuBft207_24aEctocarpus subulatus male Bft15bgeneScaffold_358 92620..93153 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft207_24a-0001-exonEsuBft207_24a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_358 92620..93153 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft207_24a-0001-exonagat-three_prime_utr-8085Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_358 92620..92767 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft207_24a-0001-cdsEsuBft207_24a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_358 92768..92932 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft207_24a-0001-exonagat-five_prime_utr-5253Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_358 92933..93153 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft207_24a-0001EsuBft207_24Ectocarpus subulatus male Bft15bpolypeptideScaffold_358 92768..92932 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft207_24a-0001 ID=EsuBft207_24a-0001|Name=EsuBft207_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=534bp|location=Sequence derived from alignment at Scaffold_358:92620..93153- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CTGCTGCTGCTGCTGCTGGGGAATTTTTTTCAATCACACATAGCAAACAC
GGAAACAGTAGAACGAGTACAGCAGCAGCACCAAGACCTCAACCGCGCTG
ATTCCTTCGGTTCGGCTGTCTATATGATACCATCTCCCGGCACCGTGCTG
CTTCGTGGGTATTGGGTGCTTGGGTGCTGCTCAATAAGGTGTGTGAGAGA
CGTGTGCCACCTCACCAAACAATGCCGTTGGAAAAAATGCGGCGAGATGT
TCTGTTTTCGGTCGGACATGTCAACATCAATCCACGGCACCACGCAGCAG
AAGAGCAACAGGGCCTCCGACACGCTAATTCTTTCGGATTGGCCATCTAT
ATGATGCTGGCCGTCAGCGCGGCTGCCGCCCTATGATTGTTGAGCTCGTC
TACCTTTGGGCAGTTGGTGGTCAAAGATGGGAGCCGCAACCGTGATAAAT
GAGCTGCAAACTCAAGAAATCGCAAGCAACACCCAGGTTGCAACAATCTG
CCCTGCGCCTGTTGTTGCTGAAAAATGAAAACAG
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protein sequence of EsuBft207_24a-0001

>EsuBft207_24 ID=EsuBft207_24|Name=EsuBft207_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=54bp
MPLEKMRRDVLFSVGHVNINPRHHAAEEQQGLRHANSFGLAIYMMLAVSA
AAAL
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mRNA from alignment at Scaffold_358:92620..93153-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft207_24a-0001 ID=EsuBft207_24a-0001|Name=EsuBft207_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=534bp|location=Sequence derived from alignment at Scaffold_358:92620..93153- (Ectocarpus subulatus male Bft15b)
CTGCTGCTGCTGCTGCTGGGGAATTTTTTTCAATCACACATAGCAAACAC
GGAAACAGTAGAACGAGTACAGCAGCAGCACCAAGACCTCAACCGCGCTG
ATTCCTTCGGTTCGGCTGTCTATATGATACCATCTCCCGGCACCGTGCTG
CTTCGTGGGTATTGGGTGCTTGGGTGCTGCTCAATAAGGTGTGTGAGAGA
CGTGTGCCACCTCACCAAACAATGCCGTTGGAAAAAATGCGGCGAGATGT
TCTGTTTTCGGTCGGACATGTCAACATCAATCCACGGCACCACGCAGCAG
AAGAGCAACAGGGCCTCCGACACGCTAATTCTTTCGGATTGGCCATCTAT
ATGATGCTGGCCGTCAGCGCGGCTGCCGCCCTATGATTGTTGAGCTCGTC
TACCTTTGGGCAGTTGGTGGTCAAAGATGGGAGCCGCAACCGTGATAAAT
GAGCTGCAAACTCAAGAAATCGCAAGCAACACCCAGGTTGCAACAATCTG
CCCTGCGCCTGTTGTTGCTGAAAAATGAAAACAG
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Coding sequence (CDS) from alignment at Scaffold_358:92620..93153-

>EsuBft207_24a-0001 ID=EsuBft207_24a-0001|Name=EsuBft207_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=165bp|location=Sequence derived from alignment at Scaffold_358:92620..93153- (Ectocarpus subulatus male Bft15b)
ATGCCGTTGGAAAAAATGCGGCGAGATGTTCTGTTTTCGGTCGGACATGT
CAACATCAATCCACGGCACCACGCAGCAGAAGAGCAACAGGGCCTCCGAC
ACGCTAATTCTTTCGGATTGGCCATCTATATGATGCTGGCCGTCAGCGCG
GCTGCCGCCCTATGA
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