EsuBft936_15a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft936_15a-0001
Unique NameEsuBft936_15a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_350contigScaffold_350:128963..130886 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog6500.XP_005092035.1
ProteomeIdEsuBft936_15
Protein domainsSSF56672
Protein domainsPTHR19446
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Protein domainsIPR000477
Protein domainsCYTOPLASMIC_DOMAIN
Ownerapollo_admin@sb-roscoff.fr
Notetransposon tx1 uncharacterized 149 kda protein os:xenopus laevis pe:3 sv:1 [Automatic annotation]
Nb exon3
Max annot lvl33208|Metazoa
Length1785
Hectar predicted targeting categoryother localisation
Evalue1.57e-66
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3D94V@33213|Bilateria
Date last modified2016-06-14
Date creation2016-06-14
DescriptionRibonuclease H protein
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0006259
GO0003824
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft936_15aEsuBft936_15aEctocarpus subulatus male Bft15bgeneScaffold_350 128963..130886 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft936_15a-0001-exonEsuBft936_15a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_350 128963..129679 +
EsuBft936_15a-0001-exonagat-exon-78559Ectocarpus subulatus male Bft15bexonScaffold_350 129752..130339 +
EsuBft936_15a-0001-exonagat-exon-78558Ectocarpus subulatus male Bft15bexonScaffold_350 130407..130886 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft936_15a-0001-exonagat-five_prime_utr-15106Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_350 128963..129202 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft936_15a-0001-cdsEsuBft936_15a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_350 129203..129679 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft936_15a-0001EsuBft936_15Ectocarpus subulatus male Bft15bpolypeptideScaffold_350 129203..130886 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft936_15a-0001 ID=EsuBft936_15a-0001|Name=EsuBft936_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1785bp|location=Sequence derived from alignment at Scaffold_350:128963..130886+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGAAGCGCAGCACGAGATCTCCGAAGCGTCTCAGGAGATTAAGGCACCCA
GCAGCAACTGCGTGAGGCCTCAAAGAACAGCGCCTTCGAGGTGACCCTAA
AGGCGATGCTCAAGGCGACGCGGAAGAAGCGCAGCATCACGAGGTGGAGA
GCACTGGAAACGTTCTTCGAGGGTTATGTACGGCAGCTCGAGAAAAAGAG
CCGCGAGAGGGACTAGGCGGGTTTCTACAGGCACCTCTCGATGATCAACA
TCGAAGGTAAGAGGTCGTTCACCTCTCAGAACGTCAAGGACGAGGACAGC
AAGGTCCTTCGGGACCTCACGTTTATTCGCCAACGGTGGACACGGTGGTT
CCACAAGCTTCTCAACACCAAGTCGCCGACCATCGACCTGCATGCGGCTG
ACAAGGTCAAGCGGTGGCCCACGTGCGTGCCACTCGACGACATCCCATCT
CTACTTGAGGTTGAGGAAGCGGTACGGGAAATGGCCAACAGAAAGGCCGT
CGGGCCGGACGACCTACCGGCTGAGCTGATCAAGCTTTTCCTGGACGGAG
ATCAAGGTCTCCTTCGCGAATTCCACGCCGTTGTAGTGGACGTGTGGCAG
ACTCGGGACGTACCACAGCAGTGGAAGGATGCCACCATCAAGGTGCTGTT
TAAGAAGGGGGACACGATGGAGTGCGGCAACTACCGGGGCATCTCTCTCG
TCGCACACGCCGGCAAGAGCGGTTTCCGCCCACACCGGTCGACGTTCGAC
ATGCTGTTCGCCATCCAGCGGCTCCATGAGCTCGCGAGGAAGAAGAGTAC
TGCGGTGTTCGCGTGCTTCGTCGACCTCACCAAGGCATACGATTCGGTGG
ACCGAGACCTACTGTGGGACGTGCTCCGACGCTTCGGCGTGCCCCCGAAG
ATGCTGGCGGTCATTCGCCACTTCCACGAGGGCATGAGGGCGCGCGTCCG
AACGGACGACGGGCAGTGCTCGGAATGGTTCGGCGTGGGCCAAGGCCTCC
GACAGGGATGCAACCTGACTCCGCTGCTGTTCAACTTGTTCTTTGCCGCG
ATGCTCATGGTCTCCGTGGCCGAGTTCGACAAGGACCCCAAGGTGACGGA
GGACATGGTCAAGATCGGGACACAAGTGGAGTACACGGGCAAGCAGGGCA
GGTCGGCGGTGAAGAAGACGACGGTGGTGACCGACGCGGAGGCCTTGTGG
GCCATGCTCTACGCTGACGACGCGGCTATCGTCTCGCGCTCGCCGGAGAG
TCTCGAGAAGATGATGTCGGTCATCGTGCGCGTGGCCGGCCTGTTCGGAC
TGATGACAGATCGGTTTGTGTACCTCGGACGTACCATCTCCGCGGACGGG
AAGGCCGACCGGGAGATCACGAGCCGCAGCTGCCGCGCGTGGAAGTGCTA
CCGCCGGAACAGTGCTTCGATATACGACAGGTTACGGGCCAACCGCCAGC
TCAAGATCCGGCTAGTCCAGACTGAAGTGGTGGAGACTCTCCTGTATTGG
TGTGCCTCGTGGAGCCTTTTAGCGGAGCACTACACGAAGCTCAATGGGAC
CCACCGCCAGTTCCTCACACGGTGCATCGGCTGGAGCAAGCGGAAACGCT
CAGACCGCCCCCTGTCCTATGCCCAGGCCCTCATCCAGGCAGGCTGCGAG
GAAACCATCGAGGCCACCGTGCGCAAACGGAGACTGTGTNAGTACGGCCA
TCTCAGGACCGAAGAGAAAGAGAGCCGGGGAAGCGGCGGTGGGGGGAAAG
AAACGGCGACCGGGTACTGCTGTAGAAGCGAGTAG
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protein sequence of EsuBft936_15a-0001

>EsuBft936_15 ID=EsuBft936_15|Name=EsuBft936_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=514bp
MINIEGKRSFTSQNVKDEDSKVLRDLTFIRQRWTRWFHKLLNTKSPTIDL
HAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLF
LDGDQGLLREFHAVVVDVWQTRDVPQQWKDATIKVLFKKGDTMECGNYRG
ISLVAHAGKSGFRPHRSTFDMLFAIQRLHELARKKSTAVFACFVDLTKAY
DSVDRDLLWDVLRRFGVPPKMLAVIRHFHEGMRARVRTDDGQCSEWFGVG
QGLRQGCNLTPLLFNLFFAAMLMVSVAEFDKDPKVTEDMVKIGTQVEYTG
KQGRSAVKKTTVVTDAEALWAMLYADDAAIVSRSPESLEKMMSVIVRVAG
LFGLMTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASIYDRLRA
NRQLKIRLVQTEVVETLLYWCASWSLLAEHYTKLNGTHRQFLTRCIGWSK
RKRSDRPLSYAQALIQAGCEETIEATVRKRRLCXYGHLRTEEKESRGSGG
GGKETATGYCCRSE
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mRNA from alignment at Scaffold_350:128963..130886+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft936_15a-0001 ID=EsuBft936_15a-0001|Name=EsuBft936_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1924bp|location=Sequence derived from alignment at Scaffold_350:128963..130886+ (Ectocarpus subulatus male Bft15b)
CGAAGCGCAGCACGAGATCTCCGAAGCGTCTCAGGAGATTAAGGCACCCA
GCAGCAACTGCGTGAGGCCTCAAAGAACAGCGCCTTCGAGGTGACCCTAA
AGGCGATGCTCAAGGCGACGCGGAAGAAGCGCAGCATCACGAGGTGGAGA
GCACTGGAAACGTTCTTCGAGGGTTATGTACGGCAGCTCGAGAAAAAGAG
CCGCGAGAGGGACTAGGCGGGTTTCTACAGGCACCTCTCGATGATCAACA
TCGAAGGTAAGAGGTCGTTCACCTCTCAGAACGTCAAGGACGAGGACAGC
AAGGTCCTTCGGGACCTCACGTTTATTCGCCAACGGTGGACACGGTGGTT
CCACAAGCTTCTCAACACCAAGTCGCCGACCATCGACCTGCATGCGGCTG
ACAAGGTCAAGCGGTGGCCCACGTGCGTGCCACTCGACGACATCCCATCT
CTACTTGAGGTTGAGGAAGCGGTACGGGAAATGGCCAACAGAAAGGCCGT
CGGGCCGGACGACCTACCGGCTGAGCTGATCAAGCTTTTCCTGGACGGAG
ATCAAGGTCTCCTTCGCGAATTCCACGCCGTTGTAGTGGACGTGTGGCAG
ACTCGGGACGTACCACAGCAGTGGAAGGATGCCACCATCAAGGTGCTGTT
TAAGAAGGGGGACACGATGGAGTGCGGCAACTACCGGGGCATCTCTCTCG
TCGCACACGCCGGCAAGGTGCTGCTTAAGGTCGTCGCTACACGATTGAGC
CACTACTACGAGCGAGAGGGCATCCTCCCAGAGGAGTAGAGCGGTTTCCG
CCCACACCGGTCGACGTTCGACATGCTGTTCGCCATCCAGCGGCTCCATG
AGCTCGCGAGGAAGAAGAGTACTGCGGTGTTCGCGTGCTTCGTCGACCTC
ACCAAGGCATACGATTCGGTGGACCGAGACCTACTGTGGGACGTGCTCCG
ACGCTTCGGCGTGCCCCCGAAGATGCTGGCGGTCATTCGCCACTTCCACG
AGGGCATGAGGGCGCGCGTCCGAACGGACGACGGGCAGTGCTCGGAATGG
TTCGGCGTGGGCCAAGGCCTCCGACAGGGATGCAACCTGACTCCGCTGCT
GTTCAACTTGTTCTTTGCCGCGATGCTCATGGTCTCCGTGGCCGAGTTCG
ACAAGGACCCCAAGGTGACGGAGGACATGGTCAAGATCGGGACACAAGTG
GAGTACACGGGCAAGCAGGGCAGGTCGGCGGTGAAGAAGACGACGGTGGT
GACCGACGCGGAGGCCTTGTGGGCCATGCTCTACGCTGACGACGCGGCTA
TCGTCTCGCGCTCGCCGGAGAGTCTCGAGAAGATGATGTCGGTCATCGTG
CGCGTGGCCGGCCTGTTCGGACTGATGGTATCGGAGCCAAAGACGGAGAT
CATGTGNGTTCACGGTCAGCGCCGCCGGCCAGACGTACAAGCAGACAGAT
CGGTTTGTGTACCTCGGACGTACCATCTCCGCGGACGGGAAGGCCGACCG
GGAGATCACGAGCCGCAGCTGCCGCGCGTGGAAGTGCTACCGCCGGAACA
GTGCTTCGATATACGACAGGTTACGGGCCAACCGCCAGCTCAAGATCCGG
CTAGTCCAGACTGAAGTGGTGGAGACTCTCCTGTATTGGTGTGCCTCGTG
GAGCCTTTTAGCGGAGCACTACACGAAGCTCAATGGGACCCACCGCCAGT
TCCTCACACGGTGCATCGGCTGGAGCAAGCGGAAACGCTCAGACCGCCCC
CTGTCCTATGCCCAGGCCCTCATCCAGGCAGGCTGCGAGGAAACCATCGA
GGCCACCGTGCGCAAACGGAGACTGTGTNAGTACGGCCATCTCAGGACCG
AAGAGAAAGAGAGCCGGGGAAGCGGCGGTGGGGGGAAAGAAACGGCGACC
GGGTACTGCTGTAGAAGCGAGTAG
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Coding sequence (CDS) from alignment at Scaffold_350:128963..130886+

>EsuBft936_15a-0001 ID=EsuBft936_15a-0001|Name=EsuBft936_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1545bp|location=Sequence derived from alignment at Scaffold_350:128963..130886+ (Ectocarpus subulatus male Bft15b)
ATGATCAACATCGAAGGTAAGAGGTCGTTCACCTCTCAGAACGTCAAGGA
CGAGGACAGCAAGGTCCTTCGGGACCTCACGTTTATTCGCCAACGGTGGA
CACGGTGGTTCCACAAGCTTCTCAACACCAAGTCGCCGACCATCGACCTG
CATGCGGCTGACAAGGTCAAGCGGTGGCCCACGTGCGTGCCACTCGACGA
CATCCCATCTCTACTTGAGGTTGAGGAAGCGGTACGGGAAATGGCCAACA
GAAAGGCCGTCGGGCCGGACGACCTACCGGCTGAGCTGATCAAGCTTTTC
CTGGACGGAGATCAAGGTCTCCTTCGCGAATTCCACGCCGTTGTAGTGGA
CGTGTGGCAGACTCGGGACGTACCACAGCAGTGGAAGGATGCCACCATCA
AGGTGCTGTTTAAGAAGGGGGACACGATGGAGTGCGGCAACTACCGGGGC
ATCTCTCTCGTCGCACACGCCGGCAAGAGCGGTTTCCGCCCACACCGGTC
GACGTTCGACATGCTGTTCGCCATCCAGCGGCTCCATGAGCTCGCGAGGA
AGAAGAGTACTGCGGTGTTCGCGTGCTTCGTCGACCTCACCAAGGCATAC
GATTCGGTGGACCGAGACCTACTGTGGGACGTGCTCCGACGCTTCGGCGT
GCCCCCGAAGATGCTGGCGGTCATTCGCCACTTCCACGAGGGCATGAGGG
CGCGCGTCCGAACGGACGACGGGCAGTGCTCGGAATGGTTCGGCGTGGGC
CAAGGCCTCCGACAGGGATGCAACCTGACTCCGCTGCTGTTCAACTTGTT
CTTTGCCGCGATGCTCATGGTCTCCGTGGCCGAGTTCGACAAGGACCCCA
AGGTGACGGAGGACATGGTCAAGATCGGGACACAAGTGGAGTACACGGGC
AAGCAGGGCAGGTCGGCGGTGAAGAAGACGACGGTGGTGACCGACGCGGA
GGCCTTGTGGGCCATGCTCTACGCTGACGACGCGGCTATCGTCTCGCGCT
CGCCGGAGAGTCTCGAGAAGATGATGTCGGTCATCGTGCGCGTGGCCGGC
CTGTTCGGACTGATGACAGATCGGTTTGTGTACCTCGGACGTACCATCTC
CGCGGACGGGAAGGCCGACCGGGAGATCACGAGCCGCAGCTGCCGCGCGT
GGAAGTGCTACCGCCGGAACAGTGCTTCGATATACGACAGGTTACGGGCC
AACCGCCAGCTCAAGATCCGGCTAGTCCAGACTGAAGTGGTGGAGACTCT
CCTGTATTGGTGTGCCTCGTGGAGCCTTTTAGCGGAGCACTACACGAAGC
TCAATGGGACCCACCGCCAGTTCCTCACACGGTGCATCGGCTGGAGCAAG
CGGAAACGCTCAGACCGCCCCCTGTCCTATGCCCAGGCCCTCATCCAGGC
AGGCTGCGAGGAAACCATCGAGGCCACCGTGCGCAAACGGAGACTGTGTN
AGTACGGCCATCTCAGGACCGAAGAGAAAGAGAGCCGGGGAAGCGGCGGT
GGGGGGAAAGAAACGGCGACCGGGTACTGCTGTAGAAGCGAGTAG
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