Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 6500.XP_005092035.1 |
| ProteomeId | EsuBft936_15 |
| Protein domains | SSF56672 |
| Protein domains | PTHR19446 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | TRANSMEMBRANE |
| Protein domains | IPR000477 |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | transposon tx1 uncharacterized 149 kda protein os:xenopus laevis pe:3 sv:1 [Automatic annotation] |
| Nb exon | 3 |
| Max annot lvl | 33208|Metazoa |
| Length | 1785 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.57e-66 |
| EggNOG OGs | KOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3D94V@33213|Bilateria |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | Ribonuclease H protein |
| COG category | S |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0006259 |
| GO | 0003824 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft936_15a-0001 ID=EsuBft936_15a-0001|Name=EsuBft936_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1785bp|location=Sequence derived from alignment at Scaffold_350:128963..130886+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
CGAAGCGCAGCACGAGATCTCCGAAGCGTCTCAGGAGATTAAGGCACCCA
GCAGCAACTGCGTGAGGCCTCAAAGAACAGCGCCTTCGAGGTGACCCTAA
AGGCGATGCTCAAGGCGACGCGGAAGAAGCGCAGCATCACGAGGTGGAGA
GCACTGGAAACGTTCTTCGAGGGTTATGTACGGCAGCTCGAGAAAAAGAG
CCGCGAGAGGGACTAGGCGGGTTTCTACAGGCACCTCTCGATGATCAACA
TCGAAGGTAAGAGGTCGTTCACCTCTCAGAACGTCAAGGACGAGGACAGC
AAGGTCCTTCGGGACCTCACGTTTATTCGCCAACGGTGGACACGGTGGTT
CCACAAGCTTCTCAACACCAAGTCGCCGACCATCGACCTGCATGCGGCTG
ACAAGGTCAAGCGGTGGCCCACGTGCGTGCCACTCGACGACATCCCATCT
CTACTTGAGGTTGAGGAAGCGGTACGGGAAATGGCCAACAGAAAGGCCGT
CGGGCCGGACGACCTACCGGCTGAGCTGATCAAGCTTTTCCTGGACGGAG
ATCAAGGTCTCCTTCGCGAATTCCACGCCGTTGTAGTGGACGTGTGGCAG
ACTCGGGACGTACCACAGCAGTGGAAGGATGCCACCATCAAGGTGCTGTT
TAAGAAGGGGGACACGATGGAGTGCGGCAACTACCGGGGCATCTCTCTCG
TCGCACACGCCGGCAAGAGCGGTTTCCGCCCACACCGGTCGACGTTCGAC
ATGCTGTTCGCCATCCAGCGGCTCCATGAGCTCGCGAGGAAGAAGAGTAC
TGCGGTGTTCGCGTGCTTCGTCGACCTCACCAAGGCATACGATTCGGTGG
ACCGAGACCTACTGTGGGACGTGCTCCGACGCTTCGGCGTGCCCCCGAAG
ATGCTGGCGGTCATTCGCCACTTCCACGAGGGCATGAGGGCGCGCGTCCG
AACGGACGACGGGCAGTGCTCGGAATGGTTCGGCGTGGGCCAAGGCCTCC
GACAGGGATGCAACCTGACTCCGCTGCTGTTCAACTTGTTCTTTGCCGCG
ATGCTCATGGTCTCCGTGGCCGAGTTCGACAAGGACCCCAAGGTGACGGA
GGACATGGTCAAGATCGGGACACAAGTGGAGTACACGGGCAAGCAGGGCA
GGTCGGCGGTGAAGAAGACGACGGTGGTGACCGACGCGGAGGCCTTGTGG
GCCATGCTCTACGCTGACGACGCGGCTATCGTCTCGCGCTCGCCGGAGAG
TCTCGAGAAGATGATGTCGGTCATCGTGCGCGTGGCCGGCCTGTTCGGAC
TGATGACAGATCGGTTTGTGTACCTCGGACGTACCATCTCCGCGGACGGG
AAGGCCGACCGGGAGATCACGAGCCGCAGCTGCCGCGCGTGGAAGTGCTA
CCGCCGGAACAGTGCTTCGATATACGACAGGTTACGGGCCAACCGCCAGC
TCAAGATCCGGCTAGTCCAGACTGAAGTGGTGGAGACTCTCCTGTATTGG
TGTGCCTCGTGGAGCCTTTTAGCGGAGCACTACACGAAGCTCAATGGGAC
CCACCGCCAGTTCCTCACACGGTGCATCGGCTGGAGCAAGCGGAAACGCT
CAGACCGCCCCCTGTCCTATGCCCAGGCCCTCATCCAGGCAGGCTGCGAG
GAAACCATCGAGGCCACCGTGCGCAAACGGAGACTGTGTNAGTACGGCCA
TCTCAGGACCGAAGAGAAAGAGAGCCGGGGAAGCGGCGGTGGGGGGAAAG
AAACGGCGACCGGGTACTGCTGTAGAAGCGAGTAG back to topprotein sequence of EsuBft936_15a-0001 >EsuBft936_15 ID=EsuBft936_15|Name=EsuBft936_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=514bp
MINIEGKRSFTSQNVKDEDSKVLRDLTFIRQRWTRWFHKLLNTKSPTIDL
HAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLF
LDGDQGLLREFHAVVVDVWQTRDVPQQWKDATIKVLFKKGDTMECGNYRG
ISLVAHAGKSGFRPHRSTFDMLFAIQRLHELARKKSTAVFACFVDLTKAY
DSVDRDLLWDVLRRFGVPPKMLAVIRHFHEGMRARVRTDDGQCSEWFGVG
QGLRQGCNLTPLLFNLFFAAMLMVSVAEFDKDPKVTEDMVKIGTQVEYTG
KQGRSAVKKTTVVTDAEALWAMLYADDAAIVSRSPESLEKMMSVIVRVAG
LFGLMTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASIYDRLRA
NRQLKIRLVQTEVVETLLYWCASWSLLAEHYTKLNGTHRQFLTRCIGWSK
RKRSDRPLSYAQALIQAGCEETIEATVRKRRLCXYGHLRTEEKESRGSGG
GGKETATGYCCRSE back to topmRNA from alignment at Scaffold_350:128963..130886+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft936_15a-0001 ID=EsuBft936_15a-0001|Name=EsuBft936_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1924bp|location=Sequence derived from alignment at Scaffold_350:128963..130886+ (Ectocarpus subulatus male Bft15b)
CGAAGCGCAGCACGAGATCTCCGAAGCGTCTCAGGAGATTAAGGCACCCA
GCAGCAACTGCGTGAGGCCTCAAAGAACAGCGCCTTCGAGGTGACCCTAA
AGGCGATGCTCAAGGCGACGCGGAAGAAGCGCAGCATCACGAGGTGGAGA
GCACTGGAAACGTTCTTCGAGGGTTATGTACGGCAGCTCGAGAAAAAGAG
CCGCGAGAGGGACTAGGCGGGTTTCTACAGGCACCTCTCGATGATCAACA
TCGAAGGTAAGAGGTCGTTCACCTCTCAGAACGTCAAGGACGAGGACAGC
AAGGTCCTTCGGGACCTCACGTTTATTCGCCAACGGTGGACACGGTGGTT
CCACAAGCTTCTCAACACCAAGTCGCCGACCATCGACCTGCATGCGGCTG
ACAAGGTCAAGCGGTGGCCCACGTGCGTGCCACTCGACGACATCCCATCT
CTACTTGAGGTTGAGGAAGCGGTACGGGAAATGGCCAACAGAAAGGCCGT
CGGGCCGGACGACCTACCGGCTGAGCTGATCAAGCTTTTCCTGGACGGAG
ATCAAGGTCTCCTTCGCGAATTCCACGCCGTTGTAGTGGACGTGTGGCAG
ACTCGGGACGTACCACAGCAGTGGAAGGATGCCACCATCAAGGTGCTGTT
TAAGAAGGGGGACACGATGGAGTGCGGCAACTACCGGGGCATCTCTCTCG
TCGCACACGCCGGCAAGGTGCTGCTTAAGGTCGTCGCTACACGATTGAGC
CACTACTACGAGCGAGAGGGCATCCTCCCAGAGGAGTAGAGCGGTTTCCG
CCCACACCGGTCGACGTTCGACATGCTGTTCGCCATCCAGCGGCTCCATG
AGCTCGCGAGGAAGAAGAGTACTGCGGTGTTCGCGTGCTTCGTCGACCTC
ACCAAGGCATACGATTCGGTGGACCGAGACCTACTGTGGGACGTGCTCCG
ACGCTTCGGCGTGCCCCCGAAGATGCTGGCGGTCATTCGCCACTTCCACG
AGGGCATGAGGGCGCGCGTCCGAACGGACGACGGGCAGTGCTCGGAATGG
TTCGGCGTGGGCCAAGGCCTCCGACAGGGATGCAACCTGACTCCGCTGCT
GTTCAACTTGTTCTTTGCCGCGATGCTCATGGTCTCCGTGGCCGAGTTCG
ACAAGGACCCCAAGGTGACGGAGGACATGGTCAAGATCGGGACACAAGTG
GAGTACACGGGCAAGCAGGGCAGGTCGGCGGTGAAGAAGACGACGGTGGT
GACCGACGCGGAGGCCTTGTGGGCCATGCTCTACGCTGACGACGCGGCTA
TCGTCTCGCGCTCGCCGGAGAGTCTCGAGAAGATGATGTCGGTCATCGTG
CGCGTGGCCGGCCTGTTCGGACTGATGGTATCGGAGCCAAAGACGGAGAT
CATGTGNGTTCACGGTCAGCGCCGCCGGCCAGACGTACAAGCAGACAGAT
CGGTTTGTGTACCTCGGACGTACCATCTCCGCGGACGGGAAGGCCGACCG
GGAGATCACGAGCCGCAGCTGCCGCGCGTGGAAGTGCTACCGCCGGAACA
GTGCTTCGATATACGACAGGTTACGGGCCAACCGCCAGCTCAAGATCCGG
CTAGTCCAGACTGAAGTGGTGGAGACTCTCCTGTATTGGTGTGCCTCGTG
GAGCCTTTTAGCGGAGCACTACACGAAGCTCAATGGGACCCACCGCCAGT
TCCTCACACGGTGCATCGGCTGGAGCAAGCGGAAACGCTCAGACCGCCCC
CTGTCCTATGCCCAGGCCCTCATCCAGGCAGGCTGCGAGGAAACCATCGA
GGCCACCGTGCGCAAACGGAGACTGTGTNAGTACGGCCATCTCAGGACCG
AAGAGAAAGAGAGCCGGGGAAGCGGCGGTGGGGGGAAAGAAACGGCGACC
GGGTACTGCTGTAGAAGCGAGTAG back to topCoding sequence (CDS) from alignment at Scaffold_350:128963..130886+ >EsuBft936_15a-0001 ID=EsuBft936_15a-0001|Name=EsuBft936_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1545bp|location=Sequence derived from alignment at Scaffold_350:128963..130886+ (Ectocarpus subulatus male Bft15b)
ATGATCAACATCGAAGGTAAGAGGTCGTTCACCTCTCAGAACGTCAAGGA
CGAGGACAGCAAGGTCCTTCGGGACCTCACGTTTATTCGCCAACGGTGGA
CACGGTGGTTCCACAAGCTTCTCAACACCAAGTCGCCGACCATCGACCTG
CATGCGGCTGACAAGGTCAAGCGGTGGCCCACGTGCGTGCCACTCGACGA
CATCCCATCTCTACTTGAGGTTGAGGAAGCGGTACGGGAAATGGCCAACA
GAAAGGCCGTCGGGCCGGACGACCTACCGGCTGAGCTGATCAAGCTTTTC
CTGGACGGAGATCAAGGTCTCCTTCGCGAATTCCACGCCGTTGTAGTGGA
CGTGTGGCAGACTCGGGACGTACCACAGCAGTGGAAGGATGCCACCATCA
AGGTGCTGTTTAAGAAGGGGGACACGATGGAGTGCGGCAACTACCGGGGC
ATCTCTCTCGTCGCACACGCCGGCAAGAGCGGTTTCCGCCCACACCGGTC
GACGTTCGACATGCTGTTCGCCATCCAGCGGCTCCATGAGCTCGCGAGGA
AGAAGAGTACTGCGGTGTTCGCGTGCTTCGTCGACCTCACCAAGGCATAC
GATTCGGTGGACCGAGACCTACTGTGGGACGTGCTCCGACGCTTCGGCGT
GCCCCCGAAGATGCTGGCGGTCATTCGCCACTTCCACGAGGGCATGAGGG
CGCGCGTCCGAACGGACGACGGGCAGTGCTCGGAATGGTTCGGCGTGGGC
CAAGGCCTCCGACAGGGATGCAACCTGACTCCGCTGCTGTTCAACTTGTT
CTTTGCCGCGATGCTCATGGTCTCCGTGGCCGAGTTCGACAAGGACCCCA
AGGTGACGGAGGACATGGTCAAGATCGGGACACAAGTGGAGTACACGGGC
AAGCAGGGCAGGTCGGCGGTGAAGAAGACGACGGTGGTGACCGACGCGGA
GGCCTTGTGGGCCATGCTCTACGCTGACGACGCGGCTATCGTCTCGCGCT
CGCCGGAGAGTCTCGAGAAGATGATGTCGGTCATCGTGCGCGTGGCCGGC
CTGTTCGGACTGATGACAGATCGGTTTGTGTACCTCGGACGTACCATCTC
CGCGGACGGGAAGGCCGACCGGGAGATCACGAGCCGCAGCTGCCGCGCGT
GGAAGTGCTACCGCCGGAACAGTGCTTCGATATACGACAGGTTACGGGCC
AACCGCCAGCTCAAGATCCGGCTAGTCCAGACTGAAGTGGTGGAGACTCT
CCTGTATTGGTGTGCCTCGTGGAGCCTTTTAGCGGAGCACTACACGAAGC
TCAATGGGACCCACCGCCAGTTCCTCACACGGTGCATCGGCTGGAGCAAG
CGGAAACGCTCAGACCGCCCCCTGTCCTATGCCCAGGCCCTCATCCAGGC
AGGCTGCGAGGAAACCATCGAGGCCACCGTGCGCAAACGGAGACTGTGTN
AGTACGGCCATCTCAGGACCGAAGAGAAAGAGAGCCGGGGAAGCGGCGGT
GGGGGGAAAGAAACGGCGACCGGGTACTGCTGTAGAAGCGAGTAG back to top
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