Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FUH4 |
| ProteomeId | EsuBft1510_4 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Max annot lvl | 2880.D7FUH4|- |
| Length | 227 |
| Hectar predicted targeting category | no signal peptide or anchor |
| Evalue | 8.83e-17 |
| EggNOG OGs | 2EABQ@1|root,2SGK3@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1510_4a-0001 ID=EsuBft1510_4a-0001|Name=EsuBft1510_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2273bp|location=Sequence derived from alignment at Scaffold_350:81236..84337+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGTGACGTGGCATATGGGTGTGATGCCTGTAGCTGAAGTCACGTACAC
GGCCATCAACGTCGCCATGGGGAACACAAGGGCTGCGCCGTACAGCTACT
GCGTCGACGCCCACGCTGGGTTGGATGCCGATATCGTGTCTTGGTCCTTC
GTGAGTGCCATAATCAAGTAGAATACGCTTCGGAGCTCTACCATGCCATC
TATCTATCGGACCATCTGTGCTTATTTCGGGATCCCACTTCTCGGCGGAC
TCATTAGCAATTCTGGCTGAGTGAGCGACCGGTCAACAACCGAAGACAAA
TTAATTCTTCAGCTGACTCGTCCGCCCCAAAGCTGCGCGTACGGACGAGA
GGATACATGGCACGCCCACGTCTCCTGGCCATCACAACGCGGGTTGAAAT
CGATACAAACCGCTATAGCCTCGCCGTTTTTCATCGCTGTTCGATAGGAG
AAAACCATCCCCTTGATACCTTGTGGGCATTATGTCCCACTAGTTTAGTG
TGAACGCAGCATATGTTGGCGAAGCCTCCTACTTCAGATATTTCTATGCA
TAGCGCGCAATCAGGAATCCTTCCCTCCGCGCATCGTTCGCCGCTTTCGA
AACGACCCAAAGAAATTCTTCAAATTTGTTCACTTTTCATTTTTACGTTC
CAGCCGTTATCCCTCATTTTCATGGTGTCATGTGTCCTGCCTTGCGCGGC
CTGGCCGCCTGTCGCTTTTATTCGTGTACGAAATGCGGGGCACAACAGTC
AAGAAATCGGTTAGTTCATACATGGCACCATCGTACAATATTGTTGGAGC
CTTGCCCCAGCGTGTGCCCCTCCCGGTAGCAACAAAAAATCCAGTTTTGA
CTTTGCAGTCTGGTTTTCGATTTGAGTATGCCGCACAGCTCTTTGCGGAG
GACGGGGAGGAAGTCAATCAGGAATGGCTTTCTACAGTTTTGGATAAAGT
TGCTGAACAACTAGACTCCGCCGTAGAAGGCCCGGACTATCTGCCGCACA
CGGGCCATATCGACTTCCGAGAGGCTCAGAAAGCGTTCAAAGTACTGCAG
AAACAAGTAGTGTTTACTAGAGTCGATAAGGCTGCAAACTGTATTTGTGT
TATGTGTAAGGCTTGTTATATTAGACTAGCGTAAACGGAAGTTAATGGGG
AGGGATACGAAAAAATGACTGGGGGCACATTTGAAGAAATGAAGGAAACC
ATCACCACACGGCAACTAAAATTTCTGGAAGATGAACATCTACCGACCCC
TAAAGAATTTTCCAGATCCCAAACACGACAAGACGAAAGTCTAGGAAAAC
CCATAAACAACCTACCAGATACCTGCTGCCGAAACTTCATAAAGATATGG
TAGCTTGTCGAAGTACAACCACATGCTGTGCTACTACTACGGAAGGGGCA
GGACGAATAGCACATGCTTGTTTCGCTGAAATATTACGATGCACTGTGGA
GAGAAGTTGGAAGCTCCATCGGAATTGATTCAGAACGATCCTGGATCACG
TAAGGTGGGACGAAATTCTGGAGGTTCTGACCGGGGCAGATCAGATAGCG
CGTTACACTGGTGACTATTCGCCACACACTGTAGAAACGTATGATTTTGT
GGCTATGTATGCTAACATTCCTTGCCCACCCTTATAGTCCAATTGAAAGA
ATTCATTGATCTGGTGTGTGATTTCCAACTCCGGGATTCTGAGTTTCGTT
CAATTTCTGTTCCGTGTGGTATTTAAGGATAGCTCTCCGCTCGTTAAAAA
GGAAGATGTACATTGGTCCAAGCAGGAACCAGTTCCAGTAGACAAGGACA
ACAAGAAGGGGAAGACGTTTCTTAGTGGGAAAGATCGTCTATGCCGATGG
TTTGAGTTTGTTCTGACGGAAGGGTTCTCAGGCACGTATGTATGATAAAC
GAGATACTATGAGCTCTTTGAAGTCGTATCGTAGGTTTCCCCACATTGAG
ACTAAAATAAGTCACCGCTCAAGGAAAACACCTGTATATATTCCGAATCC
CTTTATTTCAGATGTCAGAGTACAGTTTTGGTATGGTGTTGAGCACAACA
TTTGGTACCGTATTCGTCATGGGGGGATTCATGAAGTTTAACTGTAAGAA
TAAGAGTGGAGATAGGAGCAACATGATAGGATGTATTTTGTCGATGGAAG
TACAGATAACCAACGATGTTGGTATCAACGCAGGTAGCCACTGTGGTATC
AATCAGGATGTGAGGATTGATTTGAACGTACTTTTAGAGACATGAGGATG
GTTGAATGGAACTCAATGGTTTT back to topprotein sequence of EsuBft1510_4a-0001 >EsuBft1510_4 ID=EsuBft1510_4|Name=EsuBft1510_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=56bp
MVTWHMGVMPVAEVTYTAINVAMGNTRAAPYSYCVDAHAGLDADIVSWSF
VSAIIK back to topmRNA from alignment at Scaffold_350:81236..84337+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1510_4a-0001 ID=EsuBft1510_4a-0001|Name=EsuBft1510_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3102bp|location=Sequence derived from alignment at Scaffold_350:81236..84337+ (Ectocarpus subulatus male Bft15b)
ATGGTGACGTGGCATATGGGTGTGATGCCTGTAGCTGAAGTCACGTAGGA
TGTGTATGGTATGTGGCACATGGTGCATGCCGCTCGATTCAACAACAGCG
CCGTGCCAGCTCGTGTCACCCCGAAAATATGTAAACAATCGACAGCAGCG
TGTAGATCTTCTATTGTACCACGTCCAACCTTTCATCTCTTTGATCTGAT
ACCTTTCGTCCGAGTTTTCGCTTGAATTGCTCGTTGCCGATCTCCCTACC
GATCCCTCTTTGCACTCAACCCCAAAGGTACACGGCCATCAACGTCGCCA
TGGGGAACACAAGGGCTGCGCCGTACAGCTACTGCGTCGACGCCCACGCT
GGGTTGGATGCCGATATCGTGTCTTGGTCCTTCGTGAGTGCCATAATCAA
GTAGAATACGCTTCGGAGCTCTACCATGCCATCTATCTATCGGACCATCT
GTGCTTATTTCGGGATCCCACTTCTCGGCGGACTCATTAGCAATTCTGGC
TGAGTGAGCGACCGGTCAACAACCGAAGACAAATTAATTCTTCAGCTGAC
TCGTCCGCCCCAAAGCTGCGCGTACGGACGAGAGGATACATGGCACGCCC
ACGTCTCCTGGCCATCACAACGCGGGTTGAAATCGATACAAACCGCTATA
GCCTCGCCGTTTTTCATCGCTGTTCGATAGGAGAAAACCATCCCCTTGAT
ACCTTGTGGGCATTATGTCCCACTAGTTTAGTGTGAACGCAGCATATGTT
GGCGAAGCCTCCTACTTCAGATATTTCTATGCATAGCGCGCAATCAGGAA
TCCTTCCCTCCGCGCATCGTTCGCCGCTTTCGAAACGACCCAAAGAAATT
CTTCAAATTTGTTCACTTTTCATTTTTACGTTCCAGCCGTTATCCCTCAT
TTTCATGGTGTCATGTGTCCTGCCTTGCGCGGCCTGGCCGCCTGTCGCTT
TTATTCGTGTACGAAATGCGGGGCACAACAGTCAAGAAATCGGTTAGTTC
ATACATGGCACCATCGTACAATATTGTTGGAGCCTTGCCCCAGCGTGTGC
CCCTCCCGGTAGCAACAAAAAATCCAGTTTTGACTTTGCAGTCTGGTTTT
CGATTTGAGTATGCCGCACAGCTCTTTGCGGAGGACGGGGAGGAAGTCAA
TCAGGAATGGCTTTCTACAGTTTTGGATAAAGTTGCTGAACAACTAGACT
CCGCCGTAGAAGGCCCGGACTATCTGCCGCACACGGGCCATATCGACTTC
CGAGAGGCTCAGAAAGCGTTCAAAGTACTGCAGAAACAAGTAGTGTTTAC
TAGAGTCGATAAGGCTGCAAACTGTATTTGTGTTATGTGTAAGGCTTGTT
ATATTAGACTAGCGTAAACGGAAGTTAATGGGGAGGGATACGAAAAAATG
ACTGGGGGCACATTTGAAGAAATGAAGGAAACCATCACCACACGGCAACT
AAAATTTCTGGAAGATGAACATCTACCGACCCCTAAAGAATTTTCCAGAT
CCCAAACACGACAAGACGAAAGTCTAGGAAAACCCATAAACAACCTACCA
GATACCTGCTGCCGAAACTTCATAAAGATATGGTAGCTTGTCGAAGTACA
ACCACATGCTGTGCTACTACTACGGAAGGGGCAGGACGAATAGCACATGC
TTGTTTCGCTGAAATATTACGATGCACTGTGGAGAGAAGTTGGAAGCTCC
ATCGGAATTGATTCAGAACGATCCTGGATCACGTAAGGTGGGACGAAATT
CTGGAGGTTCTGACCGGGGCAGATCAGATAGCGCGTTACACTGGTGACTA
TTCGCCACACACTGTAGAAACGTATGATTTTGTGGCTATGTATGCTAACA
TTCCTTGCCCACCCTTATAGTCCAATTGAAAGAATTCATTGATCTGGTGT
GTGATTTCCAACTCCGGGATTCTGAGTTTCGTTCAATTTCTGTTCCGTGT
GGTATTTAAGGATAGCTCTCCGCTCGTTAAAAAGGAAGATGTACATTGGT
CCAAGCAGGAACCAGTTCCAGTAGACAAGGACAACAAGAAGGGGAAGACG
TTTCTTAGTGGGAAAGATCGTCTATGCCGATGGTTTGAGTTTGTTCTGAC
GGAAGGGTACGTTCAGTTTGGACCTCATATATATCGCCAATCTTCTGGTA
TATTTATGGGATCCTCACCTGCACCTGAGTTTGCCAATGTATTTGCTGAC
ATGCATGAGCTAAGGTTTAACAAAGAAATGGTCACAGAGTTCAAAGCTGC
TGCGCAATCTTGTGGAGACAGTGGTTGGGAGTCTATTTACCATCGAGTGT
TCATTGAACAATACGGGGTAAGGACAAGCGATACATTGATGACATCATCA
CTGTCGCTCTGGCTTCACAAGCCAATGGTTTAAGACTTGGGCATGAGCGA
AACCTTAGGAGGAATGTACGACAACCTGATTAGTGATGAAGATGGAAATC
TCATTCCTACCAGTATTGAGTTGGCCCAAGAACAAGTAGGACATAGCGCG
CACTTTTTGGACATGGAAGTAGTCCAAGACATGACAGGTTCTCAGGCACG
TATGTATGATAAACGAGATACTATGAGCTCTTTGAAGTCGTATCGTAGGT
TTCCCCACATTGAGACTAAAATAAGTCACCGCTCAAGGTATGCCGTATTG
CGTAGTCAGTTCTGCAGATTTGCCGTCCGTTGCACCCGCGTTGAATATTT
TGAGCTAGCTGCAGCAAAGCTGATGAGGGACATGTTGTTACATCAGTATC
AGGAGGATTATTTAATTGCTAAGTCACACAATTTTCATCAAGCTTTCTTC
AGGAAAACACCTGTATATATTCCGAATCCCTTTATTTCAGATGTCAGAGT
ACAGTTTTGGTATGGTGTTGAGCACAACATTTGGTACCGTATTCGTCATG
GGGGGATTCATGAAGTTTAACTGTAAGAATAAGAGTGGAGATAGGAGCAA
CATGATAGGATGTATTTTGTCGATGGAAGTACAGATAACCAACGATGTTG
GTATCAACGCAGGTAGCCACTGTGGTATCAATCAGGATGTGAGGATTGAT
TTGAACGTACTTTTAGAGACATGAGGATGGTTGAATGGAACTCAATGGTT
TT back to topCoding sequence (CDS) from alignment at Scaffold_350:81236..84337+ >EsuBft1510_4a-0001 ID=EsuBft1510_4a-0001|Name=EsuBft1510_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=171bp|location=Sequence derived from alignment at Scaffold_350:81236..84337+ (Ectocarpus subulatus male Bft15b)
ATGGTGACGTGGCATATGGGTGTGATGCCTGTAGCTGAAGTCACGTACAC
GGCCATCAACGTCGCCATGGGGAACACAAGGGCTGCGCCGTACAGCTACT
GCGTCGACGCCCACGCTGGGTTGGATGCCGATATCGTGTCTTGGTCCTTC
GTGAGTGCCATAATCAAGTAG back to top
|