EsuBft981_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft981_7a-0001
Unique NameEsuBft981_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_347contigScaffold_347:331680..333205 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft981_7
Protein domainsSignalP-TM
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length47
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft981_7aEsuBft981_7aEctocarpus subulatus male Bft15bgeneScaffold_347 331680..333205 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft981_7a-0001EsuBft981_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_347 331699..332040 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft981_7a-0001-exonEsuBft981_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_347 331680..332079 -
EsuBft981_7a-0001-exonagat-exon-78769Ectocarpus subulatus male Bft15bexonScaffold_347 333136..333205 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft981_7a-0001-exonagat-three_prime_utr-23763Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_347 331680..331698 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft981_7a-0001-cdsEsuBft981_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_347 331699..332040 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft981_7a-0001-exonagat-five_prime_utr-15477Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_347 332041..332079 -
EsuBft981_7a-0001-exonagat-five_prime_utr-15478Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_347 333136..333205 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft981_7a-0001 ID=EsuBft981_7a-0001|Name=EsuBft981_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=470bp|location=Sequence derived from alignment at Scaffold_347:331680..333205- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
NGGTGCATAGCTTGCTGCTTCTGGGTTCCTTGCTTACCTCACTTGAAGCC
CTGCTTACATCTACAGGAGGGTTCCCCCCCACTTCCATCCGCTCGACGTG
GGCATCGTCATGCCCGCCCTGGACGTCTGCCGCCTCTCCCGAAGATGTGG
GCAGCAAGTCGTGGCAGCAGCAGCAACGGCAGTGCGAAGAGTCCACTCGA
GCGGAGGCTATCGATTCCGTCTGGAGGTCGGCTCTCACGGCAGGGGGTGG
GGCGGCCGTGGGGGCACGAGCGTTGCTAGCTTCTCCGCAGCCGGCCTCCG
GCGAAGCGGTAGCGGCAGGTGCGGTGGAGGGAGGGGAGGCGGCGTCGACG
CGGCGGGTTTCCTCGGCGATGGAAGGCTTGGAGCGCATCCCCTGGCGGGA
AGAAGGGTACCTGTCGTGGGAGTACGACGGGCACAAGATCAACTACGTTG
ACGAGGGGGACAAGAGTAAG
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protein sequence of EsuBft981_7a-0001

>EsuBft981_7 ID=EsuBft981_7|Name=EsuBft981_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=113bp
MPALDVCRLSRRCGQQVVAAAATAVRRVHSSGGYRFRLEVGSHGRGWGGR
GGTSVASFSAAGLRRSGSGRCGGGRGGGVDAAGFLGDGRLGAHPLAGRRV
PVVGVRRAQDQLR
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mRNA from alignment at Scaffold_347:331680..333205-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft981_7a-0001 ID=EsuBft981_7a-0001|Name=EsuBft981_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1526bp|location=Sequence derived from alignment at Scaffold_347:331680..333205- (Ectocarpus subulatus male Bft15b)
NGGTGCATAGCTTGCTGCTTCTGGGTTCCTTGCTTACCTCACTTGAAGCC
CTGCTTACATCTACAGGAGGGTGAGTGCTTGCCGAGGGGCTTTTGCTACT
ACGGCGGGGATGTGGAAACAGTTACTCTGCTGCTGTAGTCCAAGTGCTGA
CGTCAACATGGTGTTTTTCCTTTTACACAGCAATGATCCTTCAGCGCATC
CTCAGGTTGATGCTGGTGAGTTCCGGCGGCAGACCTGTTCTGCTGGACAA
GCGTCCGTCTTGACGTGCGTCCAACATATTCTCGTATGGTGTTGCTTCCT
CACTTTCGTTGCATGACCGGCAGAGGGTGACACCTGAAGAGCCCAGGCAG
AGGTCGGCAGTGACACACACAACTCGTCTACTTGTACCCCCCCCTTGTGA
AAGGATCTCAGTCTGGCTCCCTGCTACCACTGCATTCTCTCTGAACGAAG
CGAAGTCACGAAAGACAGGAGTAGCTACTAGTGGGGTGTGGTTGATGACG
AACGGTTTTCTTGGAAGCTTCGGCCACGTGAGATCCCAGCCCGAACCCTG
CAGCAGTAGTCACCCCGACTTTATCTCTAGGTTTGTCTGTTTTGTCTCTC
CCCCCCCCCATGCAGCCGCCACCCACTCTACCGCCCCCACGCTCTCCCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCGGAGAAGGGTATATATA
TAGATGCCCACCCTTCGCCACCAAGACCTCTTGGTGTGGCAAGGTTGCCT
CCCTGAGGATAACCCCTTTAATTCCGCCTTAGAAATGACTGCTGACACTT
GTTGTCCAGCATCATCTGTCGCCTCCGCTCCCTCTCCCTGACAGACCGAA
CGAGCAGCTGTTGGTCGAAGGTGGTTTATTTTCGGCCCGTCGTCGATTTG
GTGTTATTCTTCGATTCCGTATCGGTTGAGGTGTTGCTGCTTTCTTAGCG
GACTATGCATAAATGTTCATATCGTTCCGTTCCTTTGTTCCTCATGGAAT
CATTTCGAAATCCCATCTCTGACGACACACTAGCCCATGATAAACTTCCG
GTGTCTTGCGTATGTGACCCCTCCAACATTCTTTGGGGCCCTTCTCGTGT
CTCTGCCAAAACATAAACCGGCACAGGTTCCCCCCCACTTCCATCCGCTC
GACGTGGGCATCGTCATGCCCGCCCTGGACGTCTGCCGCCTCTCCCGAAG
ATGTGGGCAGCAAGTCGTGGCAGCAGCAGCAACGGCAGTGCGAAGAGTCC
ACTCGAGCGGAGGCTATCGATTCCGTCTGGAGGTCGGCTCTCACGGCAGG
GGGTGGGGCGGCCGTGGGGGCACGAGCGTTGCTAGCTTCTCCGCAGCCGG
CCTCCGGCGAAGCGGTAGCGGCAGGTGCGGTGGAGGGAGGGGAGGCGGCG
TCGACGCGGCGGGTTTCCTCGGCGATGGAAGGCTTGGAGCGCATCCCCTG
GCGGGAAGAAGGGTACCTGTCGTGGGAGTACGACGGGCACAAGATCAACT
ACGTTGACGAGGGGGACAAGAGTAAG
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Coding sequence (CDS) from alignment at Scaffold_347:331680..333205-

>EsuBft981_7a-0001 ID=EsuBft981_7a-0001|Name=EsuBft981_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=342bp|location=Sequence derived from alignment at Scaffold_347:331680..333205- (Ectocarpus subulatus male Bft15b)
ATGCCCGCCCTGGACGTCTGCCGCCTCTCCCGAAGATGTGGGCAGCAAGT
CGTGGCAGCAGCAGCAACGGCAGTGCGAAGAGTCCACTCGAGCGGAGGCT
ATCGATTCCGTCTGGAGGTCGGCTCTCACGGCAGGGGGTGGGGCGGCCGT
GGGGGCACGAGCGTTGCTAGCTTCTCCGCAGCCGGCCTCCGGCGAAGCGG
TAGCGGCAGGTGCGGTGGAGGGAGGGGAGGCGGCGTCGACGCGGCGGGTT
TCCTCGGCGATGGAAGGCTTGGAGCGCATCCCCTGGCGGGAAGAAGGGTA
CCTGTCGTGGGAGTACGACGGGCACAAGATCAACTACGTTGA
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