EsuBft2505_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2505_2a-0001
Unique Name	EsuBft2505_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_347	contig	Scaffold_347:214547..216399 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft2505_2
Protein domains	Coil
Protein domains	IPR001878
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	185
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Cross References

External references for this mRNA


Database	Accession
GO	0003676
GO	0008270

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2505_2a	EsuBft2505_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_347 214547..216399 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2505_2a-0001-exon	EsuBft2505_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_347 214547..216399 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2505_2a-0001-exon	agat-three_prime_utr-10111	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_347 214547..214695 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2505_2a-0001-cds	EsuBft2505_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_347 214696..216399 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2505_2a-0001	EsuBft2505_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_347 214696..216399 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_347:214547..216399-
coding sequence from alignment at Scaffold_347:214547..216399-

spliced messenger RNA

>EsuBft2505_2a-0001 ID=EsuBft2505_2a-0001|Name=EsuBft2505_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1853bp|location=Sequence derived from alignment at Scaffold_347:214547..216399- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGGTCGCAAAAATGGGGGTGACTCCTCCAGCGACTCTGCGGCGGA
AGACAGAAAGAGGTCAAGAGAAGAGCTCGTGGTCCTGAGGACGCAAGTTA
GCTCGCTGACGGATCAGATGAGCCAGCTAATGTCGCTAGTGGAAGATACC
ATGAAGGCAAGCAAGAAGGAGGAGCCAGCTGGCACCATGGAGGGTGCCGC
TGATCGCGGCGATGCTAGGGAGAGCGCCGCCGCGGAGTCCACGAACGCCG
AAGGAGGGGCACCGTGGACCGGGAGTGCGCAGGACGGGAGGTACCTGCGC
GAACCTGTTCGAGAGTCTGGCCCGTCAGGGCGACACAGCGGCGAAGCAAG
GAGCGTTGTCGCCCAAGAGGTGAGAGTAGCCGCTGCTCACAATCAAGATT
ATAGTAGTGCCATGGGAGATGGTGGTGCTGCTGTTGGCTTGGGATACGGA
GCCACAACCCCAGCGACGGGGTACCAAAGTGTGCGGTACACTTCTCCTCC
GTTCAGCGGGAAATCGAAAGGTTTCAAAGAATGGCTAAATGATTTCCGCA
TGGCAGCTAATGGCGCAAACCTGTTGGGACAATTTGAAGAGAGCGGGAGC
TTAGAGATCCCCGTCAACAGCGGAAATAGCAAGTTTTCGCTGTCACAGCA
GCACCGGAGCGAGCAAGTAGAGCTCGCATTCCACGCGTGGAACTTCCTGT
CCCACGCGTTAAAAGAAAAATATCGGGAAATCATGAAGAGGGCAGAGACG
CCCCAGGGAGCTCTTCGTGAGCTCAAGACCATACACGACCCTGAATCATC
TGTACAGCCGTCAGAGGACCTCAAGTCCCTGACGTCGACCAAGATCTCTA
GAGGTGAAAACCCCCAAAACGACCTCAATGAAATGCTCCAAACCGCAAAG
TCCTTAACCGAGAAAGGACTAACTGTCAACGAAACGTTCGTCGTTCACCT
CTTCCTGGATGCCCTTTCAAACGAGTATGCTGTGACAAAGCACAACCTAC
GACACGCGAAGGAGTTGACGCGGACCGGTGTGCTAAAGGAAGTAATCATC
GAATACAAGGCGATCAAGGACAAGCTGGAGCAGGGGAAAGGAAATGGGGC
GAAGGGCGCAGAGCAAGCGTACTTCGCCGACGGTGAGGGCCGCAAGGAGC
GGTACTCAAGTAGGAGTCAGGGGCAAGGTCGTGGTCGTGGCGGCGGCCGT
GGCCGCAGCAGCAGTCGAGGCCGCGGCGGAGGCGGTCGCGGCGGCGGCGG
GGGCGGTCGCGGCGGCCGCTCAGGCGGATCCGGAGGAGTCGAGGAGAGCA
AGGGAAGCAGCAGTGGAGGCGCCGATGACGGCGGTGGCGGGGACTATAAG
TTCCCGGGCCGGTGCTTTAGGTGTGGACATCGTGGACATCAAGCGATCGG
CTGCACTACCGACGAGAAGGACTTCGTGCCGTGGTGTGCGCGCTGCGAGG
GGTGGGGCCACACCAAAGAAAAGTGTGCGACGGAGGAGGCCGTTCTAGCG
CAAGTGGTGGAGCATGAGAGCGACGTGGACCCCGTGGAAAACCAGGCGCT
TTGTGCCGTGGCAGTCCCCCCAGGCAAGTGTGGTACCGTTGGTGAAGTAG
GTCTAGTGGGGGTTGTAGAACAAGGCCAGGCGGTGTACGTGGCCGACACA
GCGGCCACGTGCTCCATGTTTCGGATGTGCAGACAACTTCGTGGACTACC
GTGAGCGTAGCGGTCGGGTGAAGGGGATCGGAGGCGACAAGGCCCCCGTT
CCTCTTCTAGGATACGGAGATGTGACCTTAGTCCTACAGACGGAAGATGG
TGGAGTACCCGTACCAGTACTGAATGCTGCCCATGTACCAGAGGCCCCCT
ACA

protein sequence of EsuBft2505_2a-0001

>EsuBft2505_2 ID=EsuBft2505_2|Name=EsuBft2505_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=567bp
MSGRKNGGDSSSDSAAEDRKRSREELVVLRTQVSSLTDQMSQLMSLVEDT
MKASKKEEPAGTMEGAADRGDARESAAAESTNAEGGAPWTGSAQDGRYLR
EPVRESGPSGRHSGEARSVVAQEVRVAAAHNQDYSSAMGDGGAAVGLGYG
ATTPATGYQSVRYTSPPFSGKSKGFKEWLNDFRMAANGANLLGQFEESGS
LEIPVNSGNSKFSLSQQHRSEQVELAFHAWNFLSHALKEKYREIMKRAET
PQGALRELKTIHDPESSVQPSEDLKSLTSTKISRGENPQNDLNEMLQTAK
SLTEKGLTVNETFVVHLFLDALSNEYAVTKHNLRHAKELTRTGVLKEVII
EYKAIKDKLEQGKGNGAKGAEQAYFADGEGRKERYSSRSQGQGRGRGGGR
GRSSSRGRGGGGRGGGGGGRGGRSGGSGGVEESKGSSSGGADDGGGGDYK
FPGRCFRCGHRGHQAIGCTTDEKDFVPWCARCEGWGHTKEKCATEEAVLA
QVVEHESDVDPVENQALCAVAVPPGKCGTVGEVGLVGVVEQGQAVYVADT
AATCSMFRMCRQLRGLP

mRNA from alignment at Scaffold_347:214547..216399-

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2505_2a-0001 ID=EsuBft2505_2a-0001|Name=EsuBft2505_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1853bp|location=Sequence derived from alignment at Scaffold_347:214547..216399- (Ectocarpus subulatus male Bft15b)
ATGTCAGGTCGCAAAAATGGGGGTGACTCCTCCAGCGACTCTGCGGCGGA
AGACAGAAAGAGGTCAAGAGAAGAGCTCGTGGTCCTGAGGACGCAAGTTA
GCTCGCTGACGGATCAGATGAGCCAGCTAATGTCGCTAGTGGAAGATACC
ATGAAGGCAAGCAAGAAGGAGGAGCCAGCTGGCACCATGGAGGGTGCCGC
TGATCGCGGCGATGCTAGGGAGAGCGCCGCCGCGGAGTCCACGAACGCCG
AAGGAGGGGCACCGTGGACCGGGAGTGCGCAGGACGGGAGGTACCTGCGC
GAACCTGTTCGAGAGTCTGGCCCGTCAGGGCGACACAGCGGCGAAGCAAG
GAGCGTTGTCGCCCAAGAGGTGAGAGTAGCCGCTGCTCACAATCAAGATT
ATAGTAGTGCCATGGGAGATGGTGGTGCTGCTGTTGGCTTGGGATACGGA
GCCACAACCCCAGCGACGGGGTACCAAAGTGTGCGGTACACTTCTCCTCC
GTTCAGCGGGAAATCGAAAGGTTTCAAAGAATGGCTAAATGATTTCCGCA
TGGCAGCTAATGGCGCAAACCTGTTGGGACAATTTGAAGAGAGCGGGAGC
TTAGAGATCCCCGTCAACAGCGGAAATAGCAAGTTTTCGCTGTCACAGCA
GCACCGGAGCGAGCAAGTAGAGCTCGCATTCCACGCGTGGAACTTCCTGT
CCCACGCGTTAAAAGAAAAATATCGGGAAATCATGAAGAGGGCAGAGACG
CCCCAGGGAGCTCTTCGTGAGCTCAAGACCATACACGACCCTGAATCATC
TGTACAGCCGTCAGAGGACCTCAAGTCCCTGACGTCGACCAAGATCTCTA
GAGGTGAAAACCCCCAAAACGACCTCAATGAAATGCTCCAAACCGCAAAG
TCCTTAACCGAGAAAGGACTAACTGTCAACGAAACGTTCGTCGTTCACCT
CTTCCTGGATGCCCTTTCAAACGAGTATGCTGTGACAAAGCACAACCTAC
GACACGCGAAGGAGTTGACGCGGACCGGTGTGCTAAAGGAAGTAATCATC
GAATACAAGGCGATCAAGGACAAGCTGGAGCAGGGGAAAGGAAATGGGGC
GAAGGGCGCAGAGCAAGCGTACTTCGCCGACGGTGAGGGCCGCAAGGAGC
GGTACTCAAGTAGGAGTCAGGGGCAAGGTCGTGGTCGTGGCGGCGGCCGT
GGCCGCAGCAGCAGTCGAGGCCGCGGCGGAGGCGGTCGCGGCGGCGGCGG
GGGCGGTCGCGGCGGCCGCTCAGGCGGATCCGGAGGAGTCGAGGAGAGCA
AGGGAAGCAGCAGTGGAGGCGCCGATGACGGCGGTGGCGGGGACTATAAG
TTCCCGGGCCGGTGCTTTAGGTGTGGACATCGTGGACATCAAGCGATCGG
CTGCACTACCGACGAGAAGGACTTCGTGCCGTGGTGTGCGCGCTGCGAGG
GGTGGGGCCACACCAAAGAAAAGTGTGCGACGGAGGAGGCCGTTCTAGCG
CAAGTGGTGGAGCATGAGAGCGACGTGGACCCCGTGGAAAACCAGGCGCT
TTGTGCCGTGGCAGTCCCCCCAGGCAAGTGTGGTACCGTTGGTGAAGTAG
GTCTAGTGGGGGTTGTAGAACAAGGCCAGGCGGTGTACGTGGCCGACACA
GCGGCCACGTGCTCCATGTTTCGGATGTGCAGACAACTTCGTGGACTACC
GTGAGCGTAGCGGTCGGGTGAAGGGGATCGGAGGCGACAAGGCCCCCGTT
CCTCTTCTAGGATACGGAGATGTGACCTTAGTCCTACAGACGGAAGATGG
TGGAGTACCCGTACCAGTACTGAATGCTGCCCATGTACCAGAGGCCCCCT
ACA

Coding sequence (CDS) from alignment at Scaffold_347:214547..216399-

>EsuBft2505_2a-0001 ID=EsuBft2505_2a-0001|Name=EsuBft2505_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1704bp|location=Sequence derived from alignment at Scaffold_347:214547..216399- (Ectocarpus subulatus male Bft15b)
ATGTCAGGTCGCAAAAATGGGGGTGACTCCTCCAGCGACTCTGCGGCGGA
AGACAGAAAGAGGTCAAGAGAAGAGCTCGTGGTCCTGAGGACGCAAGTTA
GCTCGCTGACGGATCAGATGAGCCAGCTAATGTCGCTAGTGGAAGATACC
ATGAAGGCAAGCAAGAAGGAGGAGCCAGCTGGCACCATGGAGGGTGCCGC
TGATCGCGGCGATGCTAGGGAGAGCGCCGCCGCGGAGTCCACGAACGCCG
AAGGAGGGGCACCGTGGACCGGGAGTGCGCAGGACGGGAGGTACCTGCGC
GAACCTGTTCGAGAGTCTGGCCCGTCAGGGCGACACAGCGGCGAAGCAAG
GAGCGTTGTCGCCCAAGAGGTGAGAGTAGCCGCTGCTCACAATCAAGATT
ATAGTAGTGCCATGGGAGATGGTGGTGCTGCTGTTGGCTTGGGATACGGA
GCCACAACCCCAGCGACGGGGTACCAAAGTGTGCGGTACACTTCTCCTCC
GTTCAGCGGGAAATCGAAAGGTTTCAAAGAATGGCTAAATGATTTCCGCA
TGGCAGCTAATGGCGCAAACCTGTTGGGACAATTTGAAGAGAGCGGGAGC
TTAGAGATCCCCGTCAACAGCGGAAATAGCAAGTTTTCGCTGTCACAGCA
GCACCGGAGCGAGCAAGTAGAGCTCGCATTCCACGCGTGGAACTTCCTGT
CCCACGCGTTAAAAGAAAAATATCGGGAAATCATGAAGAGGGCAGAGACG
CCCCAGGGAGCTCTTCGTGAGCTCAAGACCATACACGACCCTGAATCATC
TGTACAGCCGTCAGAGGACCTCAAGTCCCTGACGTCGACCAAGATCTCTA
GAGGTGAAAACCCCCAAAACGACCTCAATGAAATGCTCCAAACCGCAAAG
TCCTTAACCGAGAAAGGACTAACTGTCAACGAAACGTTCGTCGTTCACCT
CTTCCTGGATGCCCTTTCAAACGAGTATGCTGTGACAAAGCACAACCTAC
GACACGCGAAGGAGTTGACGCGGACCGGTGTGCTAAAGGAAGTAATCATC
GAATACAAGGCGATCAAGGACAAGCTGGAGCAGGGGAAAGGAAATGGGGC
GAAGGGCGCAGAGCAAGCGTACTTCGCCGACGGTGAGGGCCGCAAGGAGC
GGTACTCAAGTAGGAGTCAGGGGCAAGGTCGTGGTCGTGGCGGCGGCCGT
GGCCGCAGCAGCAGTCGAGGCCGCGGCGGAGGCGGTCGCGGCGGCGGCGG
GGGCGGTCGCGGCGGCCGCTCAGGCGGATCCGGAGGAGTCGAGGAGAGCA
AGGGAAGCAGCAGTGGAGGCGCCGATGACGGCGGTGGCGGGGACTATAAG
TTCCCGGGCCGGTGCTTTAGGTGTGGACATCGTGGACATCAAGCGATCGG
CTGCACTACCGACGAGAAGGACTTCGTGCCGTGGTGTGCGCGCTGCGAGG
GGTGGGGCCACACCAAAGAAAAGTGTGCGACGGAGGAGGCCGTTCTAGCG
CAAGTGGTGGAGCATGAGAGCGACGTGGACCCCGTGGAAAACCAGGCGCT
TTGTGCCGTGGCAGTCCCCCCAGGCAAGTGTGGTACCGTTGGTGAAGTAG
GTCTAGTGGGGGTTGTAGAACAAGGCCAGGCGGTGTACGTGGCCGACACA
GCGGCCACGTGCTCCATGTTTCGGATGTGCAGACAACTTCGTGGACTACC
GTGA