EsuBft2505_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2505_3a-0001
Unique NameEsuBft2505_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_347contigScaffold_347:211699..214545 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog946362.XP_004995034.1
ProteomeIdEsuBft2505_3
Protein domainsIPR013103
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Notecopia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon4
Max annot lvl33154|Opisthokonta
Length1477
Hectar predicted targeting categoryother localisation
Evalue7.37e-14
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta
Date last modified2016-06-14
Date creation2016-06-14
DescriptionEncoded by
COG categoryJ
Cross References
External references for this mRNA
DatabaseAccession
GO0003824
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2505_3aEsuBft2505_3aEctocarpus subulatus male Bft15bgeneScaffold_347 211699..214545 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2505_3a-0001EsuBft2505_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_347 211699..214496 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2505_3a-0001-exonEsuBft2505_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_347 211699..212121 -
EsuBft2505_3a-0001-exonagat-exon-89430Ectocarpus subulatus male Bft15bexonScaffold_347 212386..212815 -
EsuBft2505_3a-0001-exonagat-exon-89428Ectocarpus subulatus male Bft15bexonScaffold_347 213184..213425 -
EsuBft2505_3a-0001-exonagat-exon-89429Ectocarpus subulatus male Bft15bexonScaffold_347 214164..214545 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2505_3a-0001-cdsEsuBft2505_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_347 211699..212121 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2505_3a-0001-exonagat-five_prime_utr-6474Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_347 214497..214545 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2505_3a-0001 ID=EsuBft2505_3a-0001|Name=EsuBft2505_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1477bp|location=Sequence derived from alignment at Scaffold_347:211699..214545- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCTCCTCTCGCTGTCTTCGTTGGCGGAGGAGGGCCACACGTATTCGGGGA
TGAAGGGGGGCCTCACGCTGACCACGAAAGCCGGGGGGGAGGTGTGGTTC
CCCCGGACTGGAAAGCTGCTGACCCAACGAGGCGATCAAATAAAGCCAAC
GCTACACACCACCTGTGCAGCACTCATTGTTCCTGGCGATGCGAAAGCAT
CCACCCCCACTGACCTCAACGAGTACGACCTCGCGCACGGCCATGCCCAC
GAGATATTGCTCAGGATCACGGTGGAGAAGCAGGGAGTGCAGCTGACGGA
TGGACCGCTGCTACCCTGTCTTGGCTGTTCGATGTCCAAGGGACAGGTGA
AACCCGTCCAGAAGAGCACGAGCACACGCGCACTGCTACCTCTCGCAGAT
GACGAGGAGGGCGGGGAGGGCGAGAGCAGAGCGGATGCATCACGCCAAGG
TTGGGGGGGGGAGAGAGACTCAGAGAGCGAGTCCGACCTCGACGTGATGG
AGGCTCGTGGGCCAGGGCAAGCGACGCCGTTTGTGCCCGAGGAGGCGCCG
ACGGCACCCGGCAACGGGATTCGGAGGCAGCGTTCCCCCGTCACCCCTTT
CGGGAAGGGGCGACTTCGGCGGAGTGACGCCGGCGGTGCTGGCGGCTCGG
GCGGCGAAGAGCCCGGCGACCCAGGTGGGGACGGCGGTAGCGGTGGTGAT
CCCGGCGACTCCGAGAACCTCGAGGAGTTGAAGTATGATCCAGCCGACGA
CCGCTACCCCCGCGGGCTAGAAGGGAAGAAACTCCTCTGGGGCGCCTCGA
ACGCTGGCCCGCTGCGCCATGGGCTTGAGAGTGGCCGCACGCGGAAGCAG
ACCCGGGAGATGCAAGGTGCCGGGGAGATGCCGGGGCCCGGAGAAACACC
GGACCCGGAAGAAGAACTGCTGGCGACCATCCTGGAAACTGGCGGGACGG
GGATTGTTGAGGACTACATCTGCAACTCGCTTGTGAAGGAGCAGTGGGAC
GAGGAGCAGACACGCCGAAAGGAGGAGGAGATGTACAGGCGCGAGATGCA
GGAGGTTCAAGTGGGTTGGACGACGAATGAGAAGGGCCTGATAGTCGACT
TCAAGGCCCGTATGGTTGCGCGGGGTTTCTCTCAAATCCCCGGCATCGAC
TTCCACCATTCATCCTCAGCGTTCCCGTCTGCAGCGTCTATCAAGACGGT
GATTGCCGTAGCCACTGAAAAGGGCAAGAAACTCGCGCACTGGGATGTGA
AGCAAGCGTACATCCACGCTAAGATAAAAGAAGAAATATACCTCAGGTTC
CCGGAAGGCTGTGGTAGCATGTCCGGCAAGGTGGTCAAGGTTGAGCGTGC
CCTGTATGGCCTACAGCGAGGAGCAAGCACATCGACGTGCGGTTCCATTT
CATTCGCGAGCTCTTCAACTCGGGCAAGATCACTGCAGAGTATGTTCCGA
CTGGAGAGCAGCACGCCGACATGCTGA
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protein sequence of EsuBft2505_3a-0001

>EsuBft2505_3 ID=EsuBft2505_3|Name=EsuBft2505_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=475bp
MKGGLTLTTKAGGEVWFPRTGKLLTQRGDQIKPTLHTTCAALIVPGDAKA
STPTDLNEYDLAHGHAHEILLRITVEKQGVQLTDGPLLPCLGCSMSKGQV
KPVQKSTSTRALLPLADDEEGGEGESRADASRQGWGGERDSESESDLDVM
EARGPGQATPFVPEEAPTAPGNGIRRQRSPVTPFGKGRLRRSDAGGAGGS
GGEEPGDPGGDGGSGGDPGDSENLEELKYDPADDRYPRGLEGKKLLWGAS
NAGPLRHGLESGRTRKQTREMQGAGEMPGPGETPDPEEELLATILETGGT
GIVEDYICNSLVKEQWDEEQTRRKEEEMYRREMQEVQVGWTTNEKGLIVD
FKARMVARGFSQIPGIDFHHSSSAFPSAASIKTVIAVATEKGKKLAHWDV
KQAYIHAKIKEEIYLRFPEGCGSMSGKVVKVERALYGLQRGASTSTCGSI
SFASSSTRARSLQSMFRLESSTPTC
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mRNA from alignment at Scaffold_347:211699..214545-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2505_3a-0001 ID=EsuBft2505_3a-0001|Name=EsuBft2505_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2847bp|location=Sequence derived from alignment at Scaffold_347:211699..214545- (Ectocarpus subulatus male Bft15b)
CCTCCTCTCGCTGTCTTCGTTGGCGGAGGAGGGCCACACGTATTCGGGGA
TGAAGGGGGGCCTCACGCTGACCACGAAAGCCGGGGGGGAGGTGTGGTTC
CCCCGGACTGGAAAGCTGCTGACCCAACGAGGCGATCAAATAAAGCCAAC
GCTACACACCACCTGTGCAGCACTCATTGTTCCTGGCGATGCGAAAGCAT
CCACCCCCACTGACCTCAACGAGTACGACCTCGCGCACGGCCATGCCCAC
GAGATATTGCTCAGGATCACGGTGGAGAAGCAGGGAGTGCAGCTGACGGA
TGGACCGCTGCTACCCTGTCTTGGCTGTTCGATGTCCAAGGGACAGGTGA
AACCCGTCCAGAAGAGCACGAGCACACGCGCAGTTAAGAAGTTATTTCGC
GTGTAACTCGACTTGGGGGGAAAGATGAAAACCAGGATCATTGCTGGCAA
CTGGTACACACTGATCATTAGAGACTATTTCTCCCGTTGGACGCGTGTTT
TCTTCTTGAAGCACACGTCTGACGCAGCGGTTGGGTTTGAGAAGTTCCTG
GCGGACTACCGAACGAAAGGGGTTCCGTGTGAGGTTTATATCGCACGTAC
CGACGGTGGCGGCGAGTTCCAGGGGCAGTTTGCGGAAGTTTGCCGCAGAC
ACGGCATCAAACAAGAGTTTACCCCCCCTCACACCCCAAAGTACAACGGT
GTAGCGGAGAGAGCGCTAGGGTTGATCACTGATGCAGCGGTTGCGTCACG
CATCCAAGCGACGCAGCTGTTCCCCGACGCACCGCACCACCCCGGGTTGT
GGGCCGAGGCCATTTCGTGTGCATGCCATTAGCTGAACTGCACCGCCCCT
AAATCAAACGAGGGACACAAATCCGCCTACGAGATGTTCCACGACTCCCC
ACCGCCTGTCGGGTCTACATACCCGTTTCTCAAACCAGCCGTGTTCAAGT
CGAGAAGAAAAGCAAAGTCGCAACCCAAGGGCGAAAAAGGATGGTACCTT
GGTCCTGCCCACAATCACGCCCGTGACTGCGTTCGCATGATAACCGAAGC
TGGAACCGTAATAACCACCCGCAATTTCACCTGGCGCCACGTGCCCGCTG
CATCGCCCGCTCCCCCGCAGCTGCTACCTCTCGCAGATGACGAGGAGGGC
GGGGAGGGCGAGAGCAGAGCGGATGCATCACGCCAAGGTTGGGGGGGGGA
GAGAGACTCAGAGAGCGAGTCCGACCTCGACGTGATGGAGGCTCGTGGGC
CAGGGCAAGCGACGCCGTTTGTGCCCGAGGAGGCGCCGACGGCACCCGGC
AACGGGATTCGGAGGCAGCGTTCCCCCGTCACCCCTTTCGGGAAGGGGCG
ACTTCGGCGGAGGTAGTGACACCCCCACCGACAGCAGCAACAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCCCGAGCAGCAGGAAAAAAGGATCAAA
ATCTGTTGCAGAATCTAAATCTCAAGATAGAAAAATTGTTTATAATCAAA
AAGGATTGGAAAGAGAAATTTTACAACTTTGTACAGATTATTAAAAATTA
CGAATAAAACTGAGAGTAATACTTTATTATCTCTTTTAGATAAATCAATT
AAATCTATGGTTATTGAAGAAATTACAAAATGAACGTATTAAAGAGAAAA
TAAATGCTATTAAAGAGGATTTATCTAATATTAAAAAAGATAAAGAAATA
CAGCCTTTTAATTTTGATTCATATCAGCAGTGACGCCGGCGGTGCTGGCG
GCTCGGGCGGCGAAGAGCCCGGCGACCCAGGTGGGGACGGCGGTAGCGGT
GGTGATCCCGGCGACTCCGAGAACCTCGAGGAGTTGAAGTATGATCCAGC
CGACGACCGCTACCCCCGCGGGCTAGAAGGGAAGAAACTCCTCTGGGGCG
CCTCGAACGCTGGCCCGCTGCGCCATGGGCTTGAGAGTGGCCGCACGCGG
AAGCAGACCCGGGAGATGCAAGGTGCCGGGGAGATGCCGGGGCCCGGAGA
AACACCGGACCCGGAAGAAGAACTGCTGGCGACCATCCTGGAAACTGGCG
GGACGGGGATTGTTGAGGACTACATCTGCAACTCGCTTGTGAAGGAGCAG
TGGGACGAGGAGCAGACACGCCGAAAGGAGGAGGAGATGTACAGGCGCGA
GATGCAGGAGGTGGCCCGAAACAGCAGGCGTTCGGGGCCGAGGTCGACGC
CAGCGGGTCTTCGCAACCACTCCCAGACCCACAACTAAGTATGACCTCGC
CAATCGGGCAGAAGCCGAGTGAGGTGGAAGCAGTACCAATGACGTACAAG
GATGTGATGTGTTCCAAGTGCAAGGTTTTTTGGGAGGCGGCCACGAAGAA
AGAGACAGATGGCCACGACAAGACTGGAACCTTTACCAAGGTCAGAAAGC
TGCCCGAGGGGCGGAAGGCCATAGGTTCAAGTGGGTTGGACGACGAATGA
GAAGGGCCTGATAGTCGACTTCAAGGCCCGTATGGTTGCGCGGGGTTTCT
CTCAAATCCCCGGCATCGACTTCCACCATTCATCCTCAGCGTTCCCGTCT
GCAGCGTCTATCAAGACGGTGATTGCCGTAGCCACTGAAAAGGGCAAGAA
ACTCGCGCACTGGGATGTGAAGCAAGCGTACATCCACGCTAAGATAAAAG
AAGAAATATACCTCAGGTTCCCGGAAGGCTGTGGTAGCATGTCCGGCAAG
GTGGTCAAGGTTGAGCGTGCCCTGTATGGCCTACAGCGAGGAGCAAGCAC
ATCGACGTGCGGTTCCATTTCATTCGCGAGCTCTTCAACTCGGGCAAGAT
CACTGCAGAGTATGTTCCGACTGGAGAGCAGCACGCCGACATGCTGA
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Coding sequence (CDS) from alignment at Scaffold_347:211699..214545-

>EsuBft2505_3a-0001 ID=EsuBft2505_3a-0001|Name=EsuBft2505_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1428bp|location=Sequence derived from alignment at Scaffold_347:211699..214545- (Ectocarpus subulatus male Bft15b)
ATGAAGGGGGGCCTCACGCTGACCACGAAAGCCGGGGGGGAGGTGTGGTT
CCCCCGGACTGGAAAGCTGCTGACCCAACGAGGCGATCAAATAAAGCCAA
CGCTACACACCACCTGTGCAGCACTCATTGTTCCTGGCGATGCGAAAGCA
TCCACCCCCACTGACCTCAACGAGTACGACCTCGCGCACGGCCATGCCCA
CGAGATATTGCTCAGGATCACGGTGGAGAAGCAGGGAGTGCAGCTGACGG
ATGGACCGCTGCTACCCTGTCTTGGCTGTTCGATGTCCAAGGGACAGGTG
AAACCCGTCCAGAAGAGCACGAGCACACGCGCACTGCTACCTCTCGCAGA
TGACGAGGAGGGCGGGGAGGGCGAGAGCAGAGCGGATGCATCACGCCAAG
GTTGGGGGGGGGAGAGAGACTCAGAGAGCGAGTCCGACCTCGACGTGATG
GAGGCTCGTGGGCCAGGGCAAGCGACGCCGTTTGTGCCCGAGGAGGCGCC
GACGGCACCCGGCAACGGGATTCGGAGGCAGCGTTCCCCCGTCACCCCTT
TCGGGAAGGGGCGACTTCGGCGGAGTGACGCCGGCGGTGCTGGCGGCTCG
GGCGGCGAAGAGCCCGGCGACCCAGGTGGGGACGGCGGTAGCGGTGGTGA
TCCCGGCGACTCCGAGAACCTCGAGGAGTTGAAGTATGATCCAGCCGACG
ACCGCTACCCCCGCGGGCTAGAAGGGAAGAAACTCCTCTGGGGCGCCTCG
AACGCTGGCCCGCTGCGCCATGGGCTTGAGAGTGGCCGCACGCGGAAGCA
GACCCGGGAGATGCAAGGTGCCGGGGAGATGCCGGGGCCCGGAGAAACAC
CGGACCCGGAAGAAGAACTGCTGGCGACCATCCTGGAAACTGGCGGGACG
GGGATTGTTGAGGACTACATCTGCAACTCGCTTGTGAAGGAGCAGTGGGA
CGAGGAGCAGACACGCCGAAAGGAGGAGGAGATGTACAGGCGCGAGATGC
AGGAGGTTCAAGTGGGTTGGACGACGAATGAGAAGGGCCTGATAGTCGAC
TTCAAGGCCCGTATGGTTGCGCGGGGTTTCTCTCAAATCCCCGGCATCGA
CTTCCACCATTCATCCTCAGCGTTCCCGTCTGCAGCGTCTATCAAGACGG
TGATTGCCGTAGCCACTGAAAAGGGCAAGAAACTCGCGCACTGGGATGTG
AAGCAAGCGTACATCCACGCTAAGATAAAAGAAGAAATATACCTCAGGTT
CCCGGAAGGCTGTGGTAGCATGTCCGGCAAGGTGGTCAAGGTTGAGCGTG
CCCTGTATGGCCTACAGCGAGGAGCAAGCACATCGACGTGCGGTTCCATT
TCATTCGCGAGCTCTTCAACTCGGGCAAGATCACTGCAGAGTATGTTCCG
ACTGGAGAGCAGCACGCCGACATGCTGA
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