EsuBft820_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft820_8a-0001
Unique NameEsuBft820_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_347contigScaffold_347:151315..151927 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft820_8
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length53
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft820_8aEsuBft820_8aEctocarpus subulatus male Bft15bgeneScaffold_347 151315..151927 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft820_8a-0001-exonEsuBft820_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_347 151315..151356 +
EsuBft820_8a-0001-exonagat-exon-60518Ectocarpus subulatus male Bft15bexonScaffold_347 151440..151927 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft820_8a-0001-cdsEsuBft820_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_347 151315..151356 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft820_8a-0001-exonagat-three_prime_utr-21921Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_347 151554..151927 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft820_8a-0001EsuBft820_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_347 151315..151553 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft820_8a-0001 ID=EsuBft820_8a-0001|Name=EsuBft820_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=530bp|location=Sequence derived from alignment at Scaffold_347:151315..151927+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGTGCAGGTCTCGGCAGACGTATCCGGAGTAACGTGCGTGGTAAG
GAAGTGGGAACAAGGGGTGGCAGTGTCGGGGGTCTGGGGGAGCATGGGCT
TGAATGGGGATTGCCTCAGAAAGAGCAAGACGGCGGATGTTTTTCTCTTG
GTGTGACCGGTGGCAATATCGATCAGCAATGTCGCACAGACTTTTGCGCG
CCGAAATATGCGTGCGACAGCTTTAACCTAACCACGTCGGTGGAAAGCGG
ATTTCTGTTCAATACGGTGTCAGGGGTACCAGGGAAGACGGGGCCGAGTT
TTGTTTGATTTCGGGTGGATGAGGTTGGGGTTTTGTTCGTTTTTCTCCAT
CTAAGGTTCGTGCCTAGAGTTCAGCTGTAGTGTTTCGACAAAAGTTTTGT
TGACTTAGAGGCAAACATTCCTAGCTATTGGGCATCGAGTTAATTTGGCT
TGGAATGACGGCCTTTACGATCGACTTTTTATGTATGTCTGGATTTATCT
GCACTTGTCGGAGGGCAAACAAAAAAATAA
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protein sequence of EsuBft820_8a-0001

>EsuBft820_8 ID=EsuBft820_8|Name=EsuBft820_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=51bp
MSVQVSADVSGVTCVVRKWEQGVAVSGVWGSMGLNGDCLRKSKTADVFLL
V
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mRNA from alignment at Scaffold_347:151315..151927+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft820_8a-0001 ID=EsuBft820_8a-0001|Name=EsuBft820_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=613bp|location=Sequence derived from alignment at Scaffold_347:151315..151927+ (Ectocarpus subulatus male Bft15b)
ATGTCGGTGCAGGTCTCGGCAGACGTATCCGGAGTAACGTGCGTAAGTAA
ATGCAGCCGCGATACGCACAACAATCATCATGTCGGGAGTGCTGAGGGGG
GAGGGCTTGGCCCTTGTGGTTGAAGGTGGTAAGGAAGTGGGAACAAGGGG
TGGCAGTGTCGGGGGTCTGGGGGAGCATGGGCTTGAATGGGGATTGCCTC
AGAAAGAGCAAGACGGCGGATGTTTTTCTCTTGGTGTGACCGGTGGCAAT
ATCGATCAGCAATGTCGCACAGACTTTTGCGCGCCGAAATATGCGTGCGA
CAGCTTTAACCTAACCACGTCGGTGGAAAGCGGATTTCTGTTCAATACGG
TGTCAGGGGTACCAGGGAAGACGGGGCCGAGTTTTGTTTGATTTCGGGTG
GATGAGGTTGGGGTTTTGTTCGTTTTTCTCCATCTAAGGTTCGTGCCTAG
AGTTCAGCTGTAGTGTTTCGACAAAAGTTTTGTTGACTTAGAGGCAAACA
TTCCTAGCTATTGGGCATCGAGTTAATTTGGCTTGGAATGACGGCCTTTA
CGATCGACTTTTTATGTATGTCTGGATTTATCTGCACTTGTCGGAGGGCA
AACAAAAAAATAA
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Coding sequence (CDS) from alignment at Scaffold_347:151315..151927+

>EsuBft820_8a-0001 ID=EsuBft820_8a-0001|Name=EsuBft820_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=156bp|location=Sequence derived from alignment at Scaffold_347:151315..151927+ (Ectocarpus subulatus male Bft15b)
ATGTCGGTGCAGGTCTCGGCAGACGTATCCGGAGTAACGTGCGTGGTAAG
GAAGTGGGAACAAGGGGTGGCAGTGTCGGGGGTCTGGGGGAGCATGGGCT
TGAATGGGGATTGCCTCAGAAAGAGCAAGACGGCGGATGTTTTTCTCTTG
GTGTGA
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