EsuBft103_17a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft103_17a-0001
Unique NameEsuBft103_17a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_344contigScaffold_344:178080..178669 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft103_17
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSignalP-TM
Protein domainsSignalP-noTM
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length42
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft103_17aEsuBft103_17aEctocarpus subulatus male Bft15bgeneScaffold_344 178080..178669 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_17a-0001-exonEsuBft103_17a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_344 178080..178354 -
EsuBft103_17a-0001-exonagat-exon-394Ectocarpus subulatus male Bft15bexonScaffold_344 178523..178669 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_17a-0001-exonagat-three_prime_utr-380Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_344 178080..178339 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_17a-0001-cdsEsuBft103_17a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_344 178340..178354 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_17a-0001EsuBft103_17Ectocarpus subulatus male Bft15bpolypeptideScaffold_344 178340..178669 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft103_17a-0001 ID=EsuBft103_17a-0001|Name=EsuBft103_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=422bp|location=Sequence derived from alignment at Scaffold_344:178080..178669- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCACCCAGCGGCGCTCGCCGCCTCGCGCTGTCTACTTTCGATCAA
CTCCTGCTCCTTTTCTACCAGCGCTTTCTGCGCGACGGCAACACCGCCCC
TTTCGACCGCGCGCTGTGTGTGCGCTGCTCCGGCCGCGTCGGCAAAGTTC
GTGCGATTCTAGTTCGGTTTCTTGCGTTGTGTCGCTGAAAACCCGAGGCT
GTGCGCTGCGGATCCGCTGTTCTACGATCACCAAACGCGGCCACGAGCGT
GAGCCTTCAAACCGAATTTCATAGGGTTTTCTGCGTTGTTCGCCCGCCCT
TTGAACGTCAGTAGAAAACGAACCCGCAGTCACGTGTAGATGACCTGTCT
CCAGATGTGTGTAACGTATGAATAGCCACATCGCTGCCTGGACGCAGGGA
CTCTTGAACAAACATACGGAGG
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protein sequence of EsuBft103_17a-0001

>EsuBft103_17 ID=EsuBft103_17|Name=EsuBft103_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=53bp
MLHPAALAASRCLLSINSCSFSTSAFCATATPPLSTARCVCAAPAASAKF
VRF
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mRNA from alignment at Scaffold_344:178080..178669-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft103_17a-0001 ID=EsuBft103_17a-0001|Name=EsuBft103_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=590bp|location=Sequence derived from alignment at Scaffold_344:178080..178669- (Ectocarpus subulatus male Bft15b)
ATGCTGCACCCAGCGGCGCTCGCCGCCTCGCGCTGTCTACTTTCGATCAA
CTCCTGCTCCTTTTCTACCAGCGCTTTCTGCGCGACGGCAACACCGCCCC
TTTCGACCGCGCGCTGTGTGTGCGCTGCTCCGGCCGCGTCGGCAAAGGTC
CGCCCCTCCCGCTTTATGTATTTGCGTTCGTTTTTCTTGAGGTGCGACGA
AATCGATTTTTTCCTCCCGCGCCGAAGGCCGAGCGTTTGCGTTTTTTGGG
GACCTCGACCGCGGTGCTTGGCGTGCTTGACTGGCCACTTTCAGACATGC
GGTTCTCGCTGGTAGTTCGTGCGATTCTAGTTCGGTTTCTTGCGTTGTGT
CGCTGAAAACCCGAGGCTGTGCGCTGCGGATCCGCTGTTCTACGATCACC
AAACGCGGCCACGAGCGTGAGCCTTCAAACCGAATTTCATAGGGTTTTCT
GCGTTGTTCGCCCGCCCTTTGAACGTCAGTAGAAAACGAACCCGCAGTCA
CGTGTAGATGACCTGTCTCCAGATGTGTGTAACGTATGAATAGCCACATC
GCTGCCTGGACGCAGGGACTCTTGAACAAACATACGGAGG
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Coding sequence (CDS) from alignment at Scaffold_344:178080..178669-

>EsuBft103_17a-0001 ID=EsuBft103_17a-0001|Name=EsuBft103_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=162bp|location=Sequence derived from alignment at Scaffold_344:178080..178669- (Ectocarpus subulatus male Bft15b)
ATGCTGCACCCAGCGGCGCTCGCCGCCTCGCGCTGTCTACTTTCGATCAA
CTCCTGCTCCTTTTCTACCAGCGCTTTCTGCGCGACGGCAACACCGCCCC
TTTCGACCGCGCGCTGTGTGTGCGCTGCTCCGGCCGCGTCGGCAAAGTTC
GTGCGATTCTAG
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