Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft103_17 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SignalP-TM |
| Protein domains | SignalP-noTM |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | SIGNAL_PEPTIDE |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Length | 42 |
| Hectar predicted targeting category | no signal peptide or anchor |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft103_17a-0001 ID=EsuBft103_17a-0001|Name=EsuBft103_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=422bp|location=Sequence derived from alignment at Scaffold_344:178080..178669- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCTGCACCCAGCGGCGCTCGCCGCCTCGCGCTGTCTACTTTCGATCAA
CTCCTGCTCCTTTTCTACCAGCGCTTTCTGCGCGACGGCAACACCGCCCC
TTTCGACCGCGCGCTGTGTGTGCGCTGCTCCGGCCGCGTCGGCAAAGTTC
GTGCGATTCTAGTTCGGTTTCTTGCGTTGTGTCGCTGAAAACCCGAGGCT
GTGCGCTGCGGATCCGCTGTTCTACGATCACCAAACGCGGCCACGAGCGT
GAGCCTTCAAACCGAATTTCATAGGGTTTTCTGCGTTGTTCGCCCGCCCT
TTGAACGTCAGTAGAAAACGAACCCGCAGTCACGTGTAGATGACCTGTCT
CCAGATGTGTGTAACGTATGAATAGCCACATCGCTGCCTGGACGCAGGGA
CTCTTGAACAAACATACGGAGG back to topprotein sequence of EsuBft103_17a-0001 >EsuBft103_17 ID=EsuBft103_17|Name=EsuBft103_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=53bp
MLHPAALAASRCLLSINSCSFSTSAFCATATPPLSTARCVCAAPAASAKF
VRF back to topmRNA from alignment at Scaffold_344:178080..178669- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft103_17a-0001 ID=EsuBft103_17a-0001|Name=EsuBft103_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=590bp|location=Sequence derived from alignment at Scaffold_344:178080..178669- (Ectocarpus subulatus male Bft15b)
ATGCTGCACCCAGCGGCGCTCGCCGCCTCGCGCTGTCTACTTTCGATCAA
CTCCTGCTCCTTTTCTACCAGCGCTTTCTGCGCGACGGCAACACCGCCCC
TTTCGACCGCGCGCTGTGTGTGCGCTGCTCCGGCCGCGTCGGCAAAGGTC
CGCCCCTCCCGCTTTATGTATTTGCGTTCGTTTTTCTTGAGGTGCGACGA
AATCGATTTTTTCCTCCCGCGCCGAAGGCCGAGCGTTTGCGTTTTTTGGG
GACCTCGACCGCGGTGCTTGGCGTGCTTGACTGGCCACTTTCAGACATGC
GGTTCTCGCTGGTAGTTCGTGCGATTCTAGTTCGGTTTCTTGCGTTGTGT
CGCTGAAAACCCGAGGCTGTGCGCTGCGGATCCGCTGTTCTACGATCACC
AAACGCGGCCACGAGCGTGAGCCTTCAAACCGAATTTCATAGGGTTTTCT
GCGTTGTTCGCCCGCCCTTTGAACGTCAGTAGAAAACGAACCCGCAGTCA
CGTGTAGATGACCTGTCTCCAGATGTGTGTAACGTATGAATAGCCACATC
GCTGCCTGGACGCAGGGACTCTTGAACAAACATACGGAGG back to topCoding sequence (CDS) from alignment at Scaffold_344:178080..178669- >EsuBft103_17a-0001 ID=EsuBft103_17a-0001|Name=EsuBft103_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=162bp|location=Sequence derived from alignment at Scaffold_344:178080..178669- (Ectocarpus subulatus male Bft15b)
ATGCTGCACCCAGCGGCGCTCGCCGCCTCGCGCTGTCTACTTTCGATCAA
CTCCTGCTCCTTTTCTACCAGCGCTTTCTGCGCGACGGCAACACCGCCCC
TTTCGACCGCGCGCTGTGTGTGCGCTGCTCCGGCCGCGTCGGCAAAGTTC
GTGCGATTCTAG back to top
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