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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 130081.XP_005704116.1 |
| ProteomeId | EsuBft103_7 |
| Protein domains | IPR009400 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | rna polymerase ii transcription factor b subunit 5 os:ustilago maydis (strain 521 fgsc 9021) gn:tfb5 pe:3 sv:2 [Automatic annotation] |
| Nb exon | 3 |
| Max annot lvl | 2759|Eukaryota |
| Length | 1038 |
| Hectar predicted targeting category | other localisation |
| Evalue | 2.8e-09 |
| EggNOG OGs | KOG3451@1|root,KOG3451@2759|Eukaryota |
| Ec32 ortholog description | TFIIH subunit TTDA/Tfb5 |
| Ec32 ortholog | Ec-01_011510.1 |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| Preferred name | GTF2H5 |
| KEGG rclass | RC00037,RC00094 |
| KEGG ko | ko:K10845,ko:K11663,ko:K16794 |
| KEGG Reaction | R04452 |
| KEGG Pathway | ko00565,ko01100,ko03022,ko03420,map00565,map01100,map03022,map03420 |
| KEGG Module | M00290 |
| GOs | GO:0000182,GO:0000428,GO:0000439,GO:0001109,GO:0001111,GO:0001112,GO:0001113,GO:0001120,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005675,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006293,GO:0006294,GO:0006296,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006355,GO:0006357,GO:0006360,GO:0006361,GO:0006362,GO:0006363,GO:0006364,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006396,GO:0006397,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009452,GO:0009628,GO:0009889,GO:0009987,GO:0010212,GO:0010332,GO:0010467,GO:0010468,GO:0010556,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016310,GO:0016591,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0022607,GO:0022613,GO:0030880,GO:0031323,GO:0031326,GO:0031334,GO:0031974,GO:0031981,GO:0032774,GO:0032806,GO:0032991,GO:0033554,GO:0033683,GO:0034367,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0036211,GO:0036260,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043412,GO:0043565,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051252,GO:0051716,GO:0055029,GO:0060255,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070816,GO:0070911,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090575,GO:0097159,GO:0097659,GO:0104004,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902494,GO:1902554,GO:1902911,GO:1903506,GO:1990234,GO:1990837,GO:2000112,GO:2001141 |
| Description | nucleotide-excision repair |
| COG category | EG |
| BRITE | ko00000,ko00001,ko00002,ko03021,ko03036,ko03400,ko04147 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0006364 |
| GO | 0006362 |
| GO | 0005829 |
| GO | 0006294 |
| GO | 0000439 |
| GO | 0000182 |
| GO | 0000990 |
| GO | 0005675 |
| GO | 0070816 |
| GO | 0005730 |
| GO | 0071480 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft103_7a-0001 ID=EsuBft103_7a-0001|Name=EsuBft103_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1038bp|location=Sequence derived from alignment at Scaffold_344:70437..73031+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ACGATCCGACCACTAGCACACAGCACGCTGCCGCGTTGTGCGATGAGCAC
AGGATACCGGAGCAGCAAGGGCGTTCTCATCACCTGCGATGTGCCCACGA
AGCAGTTCATTATGAGCCTGGACGCACGGCTGGCGTGCGTGGTGTCGGAT
CTGGACGCCACACATGTCTTCGTCAAGAAAGACAGCGTCAAAGAGATACA
GCGCGAGCTGGAGCAGCTACACGAGAAAAACGTTTACGTGCGGCCTCGAA
CATAGCAACAACGGCGGTGCACAGCAGTGCGCAACAGCGTCGGAAGACGG
CACCGGCACAATGGCTACAGGACCGTTGTGCTCTCCACGCGGACGTTTCA
TTTCGCATGGCAAATTGCAGGGAAACTGGCGAAGAGAGGGGCGGTTTTGA
TTTTTTTTTTGTGGGAGCAACCAGTGTTCAAGAGACGGTAGAAATCGTGC
AGCTTTATTGAGAGGGAGGTTCGCGATATCTACTGTGATTGCACCGTCTG
GGTGATCGCCAGTAGTATTATCACACGCTTCATTGATGGTACATGGCCTT
CTCGTACAGCGACAAGGGTGTCTCAATCCTCCACAACACGGATCTCCACA
CCACATTCATGGTCACGATGGGTGTGAGATGCTGCATGCGCTTGGTCATG
GTCCTTTTGATTGTACGCTAAACCAATGTCATTCTTCGACGAGGTAGCAC
CACGTTAACACGGCACGGCGATTGCAAACTCGTCAAACTGATGCATAGCT
TGTCCAGCGACACACTAATAGCAAAAGCCTCCGTCTAACAATGGTTGAAA
GGGAAGTCAAGACCCCAGGTGCTCTTCAAGCATGACTACGGTGGGAGGTG
AACAATCCTTGCACCGCACCAAGCACGTGATACGCGCCAACACACGGACG
ACGAGTCGTGGGCGCACACAAGAATACATGGCCTTGACTAACCACTGCGC
CCTGGCAACAATTCACCCGTATGCAGCGTCGTGCCTAGTTTATTTATATC
CACACGAGCTTTTGTCATTTCTACTGCAACATGCCGAA back to topprotein sequence of EsuBft103_7a-0001 >EsuBft103_7 ID=EsuBft103_7|Name=EsuBft103_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=70bp
MSTGYRSSKGVLITCDVPTKQFIMSLDARLACVVSDLDATHVFVKKDSVK
EIQRELEQLHEKNVYVRPRT back to topmRNA from alignment at Scaffold_344:70437..73031+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft103_7a-0001 ID=EsuBft103_7a-0001|Name=EsuBft103_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2595bp|location=Sequence derived from alignment at Scaffold_344:70437..73031+ (Ectocarpus subulatus male Bft15b)
ACGATCCGACCACTAGCACACAGCACGCTGCCGCGTTGTGCGATGAGCAC
AGGATACCGGAGCAGCAAGGGCGTTCTCATCACCTGGTACGGTACGGAAT
GGGAACGGGTCTGTTACATGCCCTAAGTCGAAGCCTACCGCAATCGTTAG
CAGCTTTGTCAAGTGTCAAAAGTGCGTCGGTCACCGAGTAGGGTCGACTT
AATGTACTGCCGCACACTGCTGTAGACGCTAGACAGCAGTGCCCAAACGG
TCTAGTGCGCTAGAATACTGCTAGATCAAACGCGTTTTTCTTTCATAGGT
AGCTCTATTCACCGTACTGCCATTGTGACGTTCCTGACGCTGGTTCACCC
GTTTTTTGCTTAAGATACCACCCCCCTCGAACCGATTTACTTTTATCAAG
TACACATTGCAGCGCCACGGCCACATTCAGCAGCGACGTTGCCGGAAAAG
GCAACTTGGGCGCCGTATCGTCGAGAGCATTCCCAAATGTCCCATTTGAT
GGTGGCATCCTGTTCGTCGTGGAGTAGTCGAGCTTTGGAAATTTGTCACG
GTGTTGCATCTTACAACCTACATACGGTAGAGAAAGATGGAAGCTTGAAA
CCATGCGCGCCAGTGTTGCGGCCTACGTACTACATGCAGGAAGTGCAAAG
CGGTGGTTTCGTGAAGGCGTGTATTTATGCATGCGTGTGAAGCCAACAGG
TCGAAAATTTGCTTGACTCCTCATAGAGGTGCACATGCAAAGCAGCGGAG
CATATTGCATTTGGCGGTCTTCGGGTACAGGCACAGCAGTGATGATGACA
TTTCAGAAATGGGTTTCCCTTCCACGGTGACAAACAATTCGCTTTGGCAC
CTCTAGGGGGAACGCGCCGCCTACAATAACAGGGCCCAGAACATGTCGAT
GGGGTTGATCTATTTCATCGATCTCGGTTGCCTTGTCCTCATTCATGTCG
TCGCTGTTGTGCTGAGCATCGCGCGAACACGTGATGTTTCACTTGCCGCT
GCAAACTTTGCTTGATGTAGCTTTACGCGGAATCAAGGGAGATGAACACC
ATTTTTGTCTTTTTTCGAATAAGGTCCCGAAATCGCTTTGGTTCAGTCGT
CGCCGCTCGATATCGCTGTTATGACTGGTATTTTTTCCCCGCCTCCGCCC
CTTCCTACCTAAGGTTGTCCCTCGTTTTGTCGTTCATGATGGGTGTTCTG
ATACAAAAACGATGGCTGTGTGAACTTGAACCTTTTTCTTTGCAGTTTAT
TACCGCCGTATTTGTTCCCTGTTGTATCCAGCGATGTGCCCACGAAGCAG
TTCATTATGAGCCTGGACGCACGGCTGGCGTGCGTGGTGTCGGATCTGGA
CGCCACACATGTCTTCGTCAAGAAAGACAGCGTCAAAGAGATACAGTGAG
TGCTATCTGCCCACCTGATTTCTGTGCACGTATGGCAGGAACCGCCTAGG
AGAATGCGCGTGTGTCGAGCTAGAATTATGCGAGGCTCTCGGAGTTGATT
CAGTTCTATGTGTACTTTGCGTAATGTTTTCACGACAGTGATGCCGATGT
CACCGGCTGTTCCACATTGTGTTGGCTGTCCTCCCCATCTTGTCCGGAAG
TATTACTCGACAATGTTGATTTGGGGACGTGTTGATGGCGGAGGTGTGGA
GGTGAGGGAAGGGCGAAAGGACCACATCCGGCCGCCGTGATACTCGCTTC
GGGTGTACCTAGGCACCAACGAACGTTTTACACATGCCATGCTTCATCCC
TTTCCAGGCGCGAGCTGGAGCAGCTACACGAGAAAAACGTTTACGTGCGG
CCTCGAACATAGCAACAACGGCGGTGCACAGCAGTGCGCAACAGCGTCGG
AAGACGGCACCGGCACAATGGCTACAGGACCGTTGTGCTCTCCACGCGGA
CGTTTCATTTCGCATGGCAAATTGCAGGGAAACTGGCGAAGAGAGGGGCG
GTTTTGATTTTTTTTTTGTGGGAGCAACCAGTGTTCAAGAGACGGTAGAA
ATCGTGCAGCTTTATTGAGAGGGAGGTTCGCGATATCTACTGTGATTGCA
CCGTCTGGGTGATCGCCAGTAGTATTATCACACGCTTCATTGATGGTACA
TGGCCTTCTCGTACAGCGACAAGGGTGTCTCAATCCTCCACAACACGGAT
CTCCACACCACATTCATGGTCACGATGGGTGTGAGATGCTGCATGCGCTT
GGTCATGGTCCTTTTGATTGTACGCTAAACCAATGTCATTCTTCGACGAG
GTAGCACCACGTTAACACGGCACGGCGATTGCAAACTCGTCAAACTGATG
CATAGCTTGTCCAGCGACACACTAATAGCAAAAGCCTCCGTCTAACAATG
GTTGAAAGGGAAGTCAAGACCCCAGGTGCTCTTCAAGCATGACTACGGTG
GGAGGTGAACAATCCTTGCACCGCACCAAGCACGTGATACGCGCCAACAC
ACGGACGACGAGTCGTGGGCGCACACAAGAATACATGGCCTTGACTAACC
ACTGCGCCCTGGCAACAATTCACCCGTATGCAGCGTCGTGCCTAGTTTAT
TTATATCCACACGAGCTTTTGTCATTTCTACTGCAACATGCCGAA back to topCoding sequence (CDS) from alignment at Scaffold_344:70437..73031+ >EsuBft103_7a-0001 ID=EsuBft103_7a-0001|Name=EsuBft103_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=213bp|location=Sequence derived from alignment at Scaffold_344:70437..73031+ (Ectocarpus subulatus male Bft15b)
ATGAGCACAGGATACCGGAGCAGCAAGGGCGTTCTCATCACCTGCGATGT
GCCCACGAAGCAGTTCATTATGAGCCTGGACGCACGGCTGGCGTGCGTGG
TGTCGGATCTGGACGCCACACATGTCTTCGTCAAGAAAGACAGCGTCAAA
GAGATACAGCGCGAGCTGGAGCAGCTACACGAGAAAAACGTTTACGTGCG
GCCTCGAACATAG back to top
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