EsuBft103_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
Seed ortholog	130081.XP_005704116.1
ProteomeId	EsuBft103_7
Protein domains	IPR009400
Owner	apollo_admin@sb-roscoff.fr
Note	rna polymerase ii transcription factor b subunit 5 os:ustilago maydis (strain 521 fgsc 9021) gn:tfb5 pe:3 sv:2 [Automatic annotation]
Nb exon	3
Max annot lvl	2759\|Eukaryota
Length	1038
Hectar predicted targeting category	other localisation
Evalue	2.8e-09
EggNOG OGs	KOG3451@1\|root,KOG3451@2759\|Eukaryota
Ec32 ortholog description	TFIIH subunit TTDA/Tfb5
Ec32 ortholog	Ec-01_011510.1
Date last modified	2016-06-13
Date creation	2016-06-13
Preferred name	GTF2H5
KEGG rclass	RC00037,RC00094
KEGG ko	ko:K10845,ko:K11663,ko:K16794
KEGG Reaction	R04452
KEGG Pathway	ko00565,ko01100,ko03022,ko03420,map00565,map01100,map03022,map03420
KEGG Module	M00290
GOs	GO:0000182,GO:0000428,GO:0000439,GO:0001109,GO:0001111,GO:0001112,GO:0001113,GO:0001120,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005675,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006293,GO:0006294,GO:0006296,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006355,GO:0006357,GO:0006360,GO:0006361,GO:0006362,GO:0006363,GO:0006364,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006396,GO:0006397,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009452,GO:0009628,GO:0009889,GO:0009987,GO:0010212,GO:0010332,GO:0010467,GO:0010468,GO:0010556,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016310,GO:0016591,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0022607,GO:0022613,GO:0030880,GO:0031323,GO:0031326,GO:0031334,GO:0031974,GO:0031981,GO:0032774,GO:0032806,GO:0032991,GO:0033554,GO:0033683,GO:0034367,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0036211,GO:0036260,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043412,GO:0043565,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051252,GO:0051716,GO:0055029,GO:0060255,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070816,GO:0070911,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090575,GO:0097159,GO:0097659,GO:0104004,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902494,GO:1902554,GO:1902911,GO:1903506,GO:1990234,GO:1990837,GO:2000112,GO:2001141
Description	nucleotide-excision repair
COG category	EG
BRITE	ko00000,ko00001,ko00002,ko03021,ko03036,ko03400,ko04147

Cross References

External references for this mRNA


Database	Accession
GO	0006364
GO	0006362
GO	0005829
GO	0006294
GO	0000439
GO	0000182
GO	0000990
GO	0005675
GO	0070816
GO	0005730
GO	0071480

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_344:70437..73031+
coding sequence from alignment at Scaffold_344:70437..73031+

spliced messenger RNA

>EsuBft103_7a-0001 ID=EsuBft103_7a-0001|Name=EsuBft103_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1038bp|location=Sequence derived from alignment at Scaffold_344:70437..73031+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ACGATCCGACCACTAGCACACAGCACGCTGCCGCGTTGTGCGATGAGCAC
AGGATACCGGAGCAGCAAGGGCGTTCTCATCACCTGCGATGTGCCCACGA
AGCAGTTCATTATGAGCCTGGACGCACGGCTGGCGTGCGTGGTGTCGGAT
CTGGACGCCACACATGTCTTCGTCAAGAAAGACAGCGTCAAAGAGATACA
GCGCGAGCTGGAGCAGCTACACGAGAAAAACGTTTACGTGCGGCCTCGAA
CATAGCAACAACGGCGGTGCACAGCAGTGCGCAACAGCGTCGGAAGACGG
CACCGGCACAATGGCTACAGGACCGTTGTGCTCTCCACGCGGACGTTTCA
TTTCGCATGGCAAATTGCAGGGAAACTGGCGAAGAGAGGGGCGGTTTTGA
TTTTTTTTTTGTGGGAGCAACCAGTGTTCAAGAGACGGTAGAAATCGTGC
AGCTTTATTGAGAGGGAGGTTCGCGATATCTACTGTGATTGCACCGTCTG
GGTGATCGCCAGTAGTATTATCACACGCTTCATTGATGGTACATGGCCTT
CTCGTACAGCGACAAGGGTGTCTCAATCCTCCACAACACGGATCTCCACA
CCACATTCATGGTCACGATGGGTGTGAGATGCTGCATGCGCTTGGTCATG
GTCCTTTTGATTGTACGCTAAACCAATGTCATTCTTCGACGAGGTAGCAC
CACGTTAACACGGCACGGCGATTGCAAACTCGTCAAACTGATGCATAGCT
TGTCCAGCGACACACTAATAGCAAAAGCCTCCGTCTAACAATGGTTGAAA
GGGAAGTCAAGACCCCAGGTGCTCTTCAAGCATGACTACGGTGGGAGGTG
AACAATCCTTGCACCGCACCAAGCACGTGATACGCGCCAACACACGGACG
ACGAGTCGTGGGCGCACACAAGAATACATGGCCTTGACTAACCACTGCGC
CCTGGCAACAATTCACCCGTATGCAGCGTCGTGCCTAGTTTATTTATATC
CACACGAGCTTTTGTCATTTCTACTGCAACATGCCGAA

protein sequence of EsuBft103_7a-0001

>EsuBft103_7 ID=EsuBft103_7|Name=EsuBft103_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=70bp
MSTGYRSSKGVLITCDVPTKQFIMSLDARLACVVSDLDATHVFVKKDSVK
EIQRELEQLHEKNVYVRPRT

mRNA from alignment at Scaffold_344:70437..73031+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft103_7a-0001 ID=EsuBft103_7a-0001|Name=EsuBft103_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2595bp|location=Sequence derived from alignment at Scaffold_344:70437..73031+ (Ectocarpus subulatus male Bft15b)
ACGATCCGACCACTAGCACACAGCACGCTGCCGCGTTGTGCGATGAGCAC
AGGATACCGGAGCAGCAAGGGCGTTCTCATCACCTGGTACGGTACGGAAT
GGGAACGGGTCTGTTACATGCCCTAAGTCGAAGCCTACCGCAATCGTTAG
CAGCTTTGTCAAGTGTCAAAAGTGCGTCGGTCACCGAGTAGGGTCGACTT
AATGTACTGCCGCACACTGCTGTAGACGCTAGACAGCAGTGCCCAAACGG
TCTAGTGCGCTAGAATACTGCTAGATCAAACGCGTTTTTCTTTCATAGGT
AGCTCTATTCACCGTACTGCCATTGTGACGTTCCTGACGCTGGTTCACCC
GTTTTTTGCTTAAGATACCACCCCCCTCGAACCGATTTACTTTTATCAAG
TACACATTGCAGCGCCACGGCCACATTCAGCAGCGACGTTGCCGGAAAAG
GCAACTTGGGCGCCGTATCGTCGAGAGCATTCCCAAATGTCCCATTTGAT
GGTGGCATCCTGTTCGTCGTGGAGTAGTCGAGCTTTGGAAATTTGTCACG
GTGTTGCATCTTACAACCTACATACGGTAGAGAAAGATGGAAGCTTGAAA
CCATGCGCGCCAGTGTTGCGGCCTACGTACTACATGCAGGAAGTGCAAAG
CGGTGGTTTCGTGAAGGCGTGTATTTATGCATGCGTGTGAAGCCAACAGG
TCGAAAATTTGCTTGACTCCTCATAGAGGTGCACATGCAAAGCAGCGGAG
CATATTGCATTTGGCGGTCTTCGGGTACAGGCACAGCAGTGATGATGACA
TTTCAGAAATGGGTTTCCCTTCCACGGTGACAAACAATTCGCTTTGGCAC
CTCTAGGGGGAACGCGCCGCCTACAATAACAGGGCCCAGAACATGTCGAT
GGGGTTGATCTATTTCATCGATCTCGGTTGCCTTGTCCTCATTCATGTCG
TCGCTGTTGTGCTGAGCATCGCGCGAACACGTGATGTTTCACTTGCCGCT
GCAAACTTTGCTTGATGTAGCTTTACGCGGAATCAAGGGAGATGAACACC
ATTTTTGTCTTTTTTCGAATAAGGTCCCGAAATCGCTTTGGTTCAGTCGT
CGCCGCTCGATATCGCTGTTATGACTGGTATTTTTTCCCCGCCTCCGCCC
CTTCCTACCTAAGGTTGTCCCTCGTTTTGTCGTTCATGATGGGTGTTCTG
ATACAAAAACGATGGCTGTGTGAACTTGAACCTTTTTCTTTGCAGTTTAT
TACCGCCGTATTTGTTCCCTGTTGTATCCAGCGATGTGCCCACGAAGCAG
TTCATTATGAGCCTGGACGCACGGCTGGCGTGCGTGGTGTCGGATCTGGA
CGCCACACATGTCTTCGTCAAGAAAGACAGCGTCAAAGAGATACAGTGAG
TGCTATCTGCCCACCTGATTTCTGTGCACGTATGGCAGGAACCGCCTAGG
AGAATGCGCGTGTGTCGAGCTAGAATTATGCGAGGCTCTCGGAGTTGATT
CAGTTCTATGTGTACTTTGCGTAATGTTTTCACGACAGTGATGCCGATGT
CACCGGCTGTTCCACATTGTGTTGGCTGTCCTCCCCATCTTGTCCGGAAG
TATTACTCGACAATGTTGATTTGGGGACGTGTTGATGGCGGAGGTGTGGA
GGTGAGGGAAGGGCGAAAGGACCACATCCGGCCGCCGTGATACTCGCTTC
GGGTGTACCTAGGCACCAACGAACGTTTTACACATGCCATGCTTCATCCC
TTTCCAGGCGCGAGCTGGAGCAGCTACACGAGAAAAACGTTTACGTGCGG
CCTCGAACATAGCAACAACGGCGGTGCACAGCAGTGCGCAACAGCGTCGG
AAGACGGCACCGGCACAATGGCTACAGGACCGTTGTGCTCTCCACGCGGA
CGTTTCATTTCGCATGGCAAATTGCAGGGAAACTGGCGAAGAGAGGGGCG
GTTTTGATTTTTTTTTTGTGGGAGCAACCAGTGTTCAAGAGACGGTAGAA
ATCGTGCAGCTTTATTGAGAGGGAGGTTCGCGATATCTACTGTGATTGCA
CCGTCTGGGTGATCGCCAGTAGTATTATCACACGCTTCATTGATGGTACA
TGGCCTTCTCGTACAGCGACAAGGGTGTCTCAATCCTCCACAACACGGAT
CTCCACACCACATTCATGGTCACGATGGGTGTGAGATGCTGCATGCGCTT
GGTCATGGTCCTTTTGATTGTACGCTAAACCAATGTCATTCTTCGACGAG
GTAGCACCACGTTAACACGGCACGGCGATTGCAAACTCGTCAAACTGATG
CATAGCTTGTCCAGCGACACACTAATAGCAAAAGCCTCCGTCTAACAATG
GTTGAAAGGGAAGTCAAGACCCCAGGTGCTCTTCAAGCATGACTACGGTG
GGAGGTGAACAATCCTTGCACCGCACCAAGCACGTGATACGCGCCAACAC
ACGGACGACGAGTCGTGGGCGCACACAAGAATACATGGCCTTGACTAACC
ACTGCGCCCTGGCAACAATTCACCCGTATGCAGCGTCGTGCCTAGTTTAT
TTATATCCACACGAGCTTTTGTCATTTCTACTGCAACATGCCGAA

Coding sequence (CDS) from alignment at Scaffold_344:70437..73031+

>EsuBft103_7a-0001 ID=EsuBft103_7a-0001|Name=EsuBft103_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=213bp|location=Sequence derived from alignment at Scaffold_344:70437..73031+ (Ectocarpus subulatus male Bft15b)
ATGAGCACAGGATACCGGAGCAGCAAGGGCGTTCTCATCACCTGCGATGT
GCCCACGAAGCAGTTCATTATGAGCCTGGACGCACGGCTGGCGTGCGTGG
TGTCGGATCTGGACGCCACACATGTCTTCGTCAAGAAAGACAGCGTCAAA
GAGATACAGCGCGAGCTGGAGCAGCTACACGAGAAAAACGTTTACGTGCG
GCCTCGAACATAG