EsuBft1014_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1014_6a-0001
Unique NameEsuBft1014_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_119contigScaffold_119:186355..187849 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1014_6
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length129
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1014_6aEsuBft1014_6aEctocarpus subulatus male Bft15bgeneScaffold_119 186355..187849 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1014_6a-0001EsuBft1014_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_119 186914..187346 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1014_6a-0001-exonEsuBft1014_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_119 186355..186917 -
EsuBft1014_6a-0001-exonagat-exon-30570Ectocarpus subulatus male Bft15bexonScaffold_119 186982..187697 -
EsuBft1014_6a-0001-exonagat-exon-30569Ectocarpus subulatus male Bft15bexonScaffold_119 187830..187849 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1014_6a-0001-exonagat-three_prime_utr-153Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_119 186355..186913 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1014_6a-0001-cdsEsuBft1014_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_119 186914..186917 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1014_6a-0001-exonagat-five_prime_utr-92Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_119 187347..187697 -
EsuBft1014_6a-0001-exonagat-five_prime_utr-93Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_119 187830..187849 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1014_6a-0001 ID=EsuBft1014_6a-0001|Name=EsuBft1014_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1299bp|location=Sequence derived from alignment at Scaffold_119:186355..187849- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGGTCAAGGCGGCTAAACAGGCATAATCGAACCTCGGTATACTGTTGTCA
CACTCACACTTGAGGTGCTGGTGCAAGTTTTGGGCGTTCGGTAGCTATCT
GTGCTTCAAACCGAAGCTACCTCGCAAGAGGGCCTCAGCAGGGCTTCAAC
ACGCGGAGCATCTCGGTGCAGTCGGTGCAGCAGCGGCACCAGGCCCAGGT
TTGCCTTACGAGGAGAATCTTGCGGTCTCAGCGGGTGCGTCGTATAGGTC
AGGGTCTGTACTTGCTCAGGCTGAAACAGCATCGAGGATTACCAATTGTA
GACGCCAATACCGGCGATTCGGCCAGCAGCTATATACCGCCATTTTCAAC
GGTTTTTTCGGTTTTTCCAGGATGGTCCGGCAGCGCCGCGCCTCGTGTGG
CAAAGTGGTGCACGGCAAAGAACCGGCAGCGGCAGGGGAGCTTCGGCGAT
GCTTCGCATGTGACCGCCCCGGTAGCCGCGACGGGTGCTCGACCAATTGG
CAGCACGTGGTGGACTCCGAATACTGGGCGGAGCTGGGCGAGTGGTCTGC
AACGGTAGGGGAAGGGTGGACTCATGAGCGCGACCTTGTAGGAGACCCTC
TCAAGGCGGGAGAGTGCATCTGTCGCCGCGCCGACTGTGTGGTTAATTTG
TACCAAAGGTACAAGGGGAGGCGCCAGAGGGAAGAGAAAGGAGCTTTGCA
CACCATGGTGATTGGGCAGCGGTCGCCGATGGGCAGGTGACTCATGCGTC
CTGTCATATGCATCGATCTGGGCGAACTCTAGAACGTTGAAATTGTAGGA
AGACGCGACAACGTTGACCCCCGTGAAAACTTTCACCCCGTTCTATTTTT
TCTGGTCAAGTTATCCTTTCTACGTTCCCACGTGACTACGTAGATATGTA
TGTGAGTTTCTGGGATCGCGACCGTCACCATGTGCTGTTGATGGTGTAGT
ATTCTACCGAGTGGTGGACGTCCCATCTCTCAACCTTGCATCGGTAGCCC
TCGCCTTACTCCTTATTTCTCGAGTGGCATTGTTCCCTTTTCCTTTGTTT
TGGTTCTCACATAAGAAAATGGTAAGTAAGAGGATGCTGTGGTCGTGCAT
CGTTGTCTGTCCTGCCCGTGTTGGTCGAAGAGTCTCGTGGCAGGAGAGAG
GGAGTCGACCCCACCCCCACAAGTCAACGGCAAAAGATATGTAGAGCGCC
CGCGAGGAGGGTGGAAACAAACATATTTATGCTGCCAGCATGCCAGCATA
CTCCCTCTGCCAGGTAACACCTAACAAAATGAAGAAATATTAAGTACGA
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protein sequence of EsuBft1014_6a-0001

>EsuBft1014_6 ID=EsuBft1014_6|Name=EsuBft1014_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=122bp
MVRQRRASCGKVVHGKEPAAAGELRRCFACDRPGSRDGCSTNWQHVVDSE
YWAELGEWSATVGEGWTHERDLVGDPLKAGECICRRADCVVNLYQRYKGR
RQREEKGALHTMVIGQRSPMGR
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mRNA from alignment at Scaffold_119:186355..187849-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1014_6a-0001 ID=EsuBft1014_6a-0001|Name=EsuBft1014_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1495bp|location=Sequence derived from alignment at Scaffold_119:186355..187849- (Ectocarpus subulatus male Bft15b)
TGGTCAAGGCGGCTAAACAGGTACGCCGGGCACTCGCAGATGGTATCCTG
TTTTCTTTTTGACCCCCCCTCAAAAGCCCCCTGGGCAGCAGGCTGCATGC
CACAGCAGGCTGCGTGTTCACAGAGCCGTAGGAGCCTCGTCGTCGCCAAC
AGGCATAATCGAACCTCGGTATACTGTTGTCACACTCACACTTGAGGTGC
TGGTGCAAGTTTTGGGCGTTCGGTAGCTATCTGTGCTTCAAACCGAAGCT
ACCTCGCAAGAGGGCCTCAGCAGGGCTTCAACACGCGGAGCATCTCGGTG
CAGTCGGTGCAGCAGCGGCACCAGGCCCAGGTTTGCCTTACGAGGAGAAT
CTTGCGGTCTCAGCGGGTGCGTCGTATAGGTCAGGGTCTGTACTTGCTCA
GGCTGAAACAGCATCGAGGATTACCAATTGTAGACGCCAATACCGGCGAT
TCGGCCAGCAGCTATATACCGCCATTTTCAACGGTTTTTTCGGTTTTTCC
AGGATGGTCCGGCAGCGCCGCGCCTCGTGTGGCAAAGTGGTGCACGGCAA
AGAACCGGCAGCGGCAGGGGAGCTTCGGCGATGCTTCGCATGTGACCGCC
CCGGTAGCCGCGACGGGTGCTCGACCAATTGGCAGCACGTGGTGGACTCC
GAATACTGGGCGGAGCTGGGCGAGTGGTCTGCAACGGTAGGGGAAGGGTG
GACTCATGAGCGCGACCTTGTAGGAGACCCTCTCAAGGCGGGAGAGTGCA
TCTGTCGCCGCGCCGACTGTGTGGTTAATTTGTACCAAAGGTACAAGGGG
AGGCGCCAGAGGGAAGAGAAAGGAGCTTTGCACACCATGGTGATTGGGCA
GCGGTCGCCGATGGGCAGGTACCCGTCGACGGGCTCCCAGGTATGACACC
GCAGAAACACCACCTTTAGTGCGGCGGTGTAGGTGACTCATGCGTCCTGT
CATATGCATCGATCTGGGCGAACTCTAGAACGTTGAAATTGTAGGAAGAC
GCGACAACGTTGACCCCCGTGAAAACTTTCACCCCGTTCTATTTTTTCTG
GTCAAGTTATCCTTTCTACGTTCCCACGTGACTACGTAGATATGTATGTG
AGTTTCTGGGATCGCGACCGTCACCATGTGCTGTTGATGGTGTAGTATTC
TACCGAGTGGTGGACGTCCCATCTCTCAACCTTGCATCGGTAGCCCTCGC
CTTACTCCTTATTTCTCGAGTGGCATTGTTCCCTTTTCCTTTGTTTTGGT
TCTCACATAAGAAAATGGTAAGTAAGAGGATGCTGTGGTCGTGCATCGTT
GTCTGTCCTGCCCGTGTTGGTCGAAGAGTCTCGTGGCAGGAGAGAGGGAG
TCGACCCCACCCCCACAAGTCAACGGCAAAAGATATGTAGAGCGCCCGCG
AGGAGGGTGGAAACAAACATATTTATGCTGCCAGCATGCCAGCATACTCC
CTCTGCCAGGTAACACCTAACAAAATGAAGAAATATTAAGTACGA
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Coding sequence (CDS) from alignment at Scaffold_119:186355..187849-

>EsuBft1014_6a-0001 ID=EsuBft1014_6a-0001|Name=EsuBft1014_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=369bp|location=Sequence derived from alignment at Scaffold_119:186355..187849- (Ectocarpus subulatus male Bft15b)
ATGGTCCGGCAGCGCCGCGCCTCGTGTGGCAAAGTGGTGCACGGCAAAGA
ACCGGCAGCGGCAGGGGAGCTTCGGCGATGCTTCGCATGTGACCGCCCCG
GTAGCCGCGACGGGTGCTCGACCAATTGGCAGCACGTGGTGGACTCCGAA
TACTGGGCGGAGCTGGGCGAGTGGTCTGCAACGGTAGGGGAAGGGTGGAC
TCATGAGCGCGACCTTGTAGGAGACCCTCTCAAGGCGGGAGAGTGCATCT
GTCGCCGCGCCGACTGTGTGGTTAATTTGTACCAAAGGTACAAGGGGAGG
CGCCAGAGGGAAGAGAAAGGAGCTTTGCACACCATGGTGATTGGGCAGCG
GTCGCCGATGGGCAGGTGA
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