EsuBft99_22a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft99_22a-0001
Unique NameEsuBft99_22a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_501contigScaffold_501:257606..260038 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G873
ProteomeIdEsuBft99_22
Protein domainsCoil
Protein domainsIPR000477
Protein domainsPTHR19446
Ownerapollo_admin@sb-roscoff.fr
Noteprobable rna-directed dna polymerase from transposon x-element os:drosophila melanogaster gn:x- [Automatic annotation]
Nb exon4
Max annot lvl2759|Eukaryota
Length1145
Evalue1.57e-45
EggNOG OGsCOG0553@1|root,COG2940@1|root,COG5076@1|root,KOG1075@1|root,KOG0383@2759|Eukaryota,KOG0384@2759|Eukaryota,KOG1075@2759|Eukaryota,KOG1081@2759|Eukaryota,KOG1474@2759|Eukaryota
Date last modified2016-06-15
Date creation2016-06-15
KEGG rclassRC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG koko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG ReactionR00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathwayko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG ModuleM00089
EC2.1.1.43,2.3.1.15,3.6.4.12
Descriptionacetylation-dependent protein binding
COG categoryBK
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft99_22aEsuBft99_22aEctocarpus subulatus male Bft15bgeneScaffold_501 257606..260038 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft99_22a-0001EsuBft99_22Ectocarpus subulatus male Bft15bpolypeptideScaffold_501 257606..259973 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft99_22a-0001-exonagat-exon-40629Ectocarpus subulatus male Bft15bexonScaffold_501 257606..257956 +
EsuBft99_22a-0001-exonEsuBft99_22a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_501 258017..258106 +
EsuBft99_22a-0001-exonagat-exon-40630Ectocarpus subulatus male Bft15bexonScaffold_501 258245..258407 +
EsuBft99_22a-0001-exonagat-exon-40628Ectocarpus subulatus male Bft15bexonScaffold_501 259498..260038 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft99_22a-0001-cdsEsuBft99_22a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_501 257606..257956 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft99_22a-0001-exonagat-three_prime_utr-23940Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_501 259974..260038 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft99_22a-0001 ID=EsuBft99_22a-0001|Name=EsuBft99_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1145bp|location=Sequence derived from alignment at Scaffold_501:257606..260038+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACA
TCGACCGATCTAGAAAGAAGGGGAGTAAGAAACAGAGGAAAGCGTTCCGG
TGGAACGTAGAGCGTTTGGGAGACGATGGGACACGGGATGAATTCCAGAA
GGTGGACATACAAGCAGCAGGGGACAGGGTCATTGAAGGGTGGGAGTCCA
TAGTGAACACAACGGCAGAGAGAGTCGTGGGAAAGAAGGTGGTGAAAGGA
CTAGTGAAAAAGAAGAAAAAGTGCATTTGGGACGAAGTAGTGCAGAAGGC
CAACGGAGGCCTGGAGGGGAACGTCAAGCAGATGTGGGAAGGGATAAGAG
GAATTGTAAAAAAGACCGCGCAAGGGGGGGATACAGGGGTAGCAACTTTG
CGAGGAGCGGATGGGATAGTCAAGGAGTTCATGAAGTTTGGGGGAAAGGG
GATGATCCAGCTGATGGTACTGCTATACAATTGGGTGTGGAAAAACGAGT
ATACGCCAAGTAGATGGAGGGAAGGAGTGGTTGTGAACTTGTTTAAGAAA
GGAGACAAGACTGACCCAGGAAACTACAGGGGGATCACACTGTTGAACAC
AGTAGGAAAAGTGTTCTGTAAGCTGCTGAACGATAGGATAGTGGGAGTAT
TGGAGAAGGAACATAGCATTAGTGAGGGCCAGGCAGGTTTCCGCAAGAAG
AGGGGGTGCGTAGACCACGTGTTCACGGTAGGGAGAATCATCCAAGGTAG
AAAGAGGGCGGGAAAGCCGACGTACTGCTTCTTCCTGGACGTGAAAAGGC
ATAAGACACCGTATGAAGAAATGGGCTGTGGAAATAAGTGTCCAAGTACG
GGACCAAGGGGAAAATGTGGAGAGAGCTGAAGAAGATGACAGAGTGAACG
CAAAGCGCGGTCATGATAGACGGAGAACTGTCTAAATTCTTCGAC
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protein sequence of EsuBft99_22a-0001

>EsuBft99_22 ID=EsuBft99_22|Name=EsuBft99_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=359bp
MAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNIDRSRKKGSKKQRKAFR
WNVERLGDDGTRDEFQKVDIQAAGDRVIEGWESIVNTTAERVVGKKVVKG
LVKKKKKCIWDEVVQKANGGLEGNVKQMWEGIRGIVKKTAQGGDTGVATL
RGADGIVKEFMKFGGKGMIQLMVLLYNWVWKNEYTPSRWREGVVVNLFKK
GDKTDPGNYRGITLLNTVGKVFCKLLNDRIVGVLEKEHSISEGQAGFRKK
RGCVDHVFTVGRIIQGRKRAGKPTYCFFLDVKRHKTPYEEMGCGNKCPST
GPRGKCGES
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mRNA from alignment at Scaffold_501:257606..260038+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft99_22a-0001 ID=EsuBft99_22a-0001|Name=EsuBft99_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2433bp|location=Sequence derived from alignment at Scaffold_501:257606..260038+ (Ectocarpus subulatus male Bft15b)
ATGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACA
TCGACCGATCTAGAAAGAAGGGGAGTAAGAAACAGAGGAAAGCGTTCCGG
TGGAACGTAGAGCGTTTGGGAGACGATGGGACACGGGATGAATTCCAGAA
GGTACTGGCTGGTAGTGTACAACCTTTCAGCAAACTGCTGAGAAGCGTTG
AAGACGGACAGGTGGACATACAAGCAGCAGGGGACAGGGTCATTGAAGGG
TGGGAGTCCATAGTGAACACAACGGCAGAGAGAGTCGTGGGAAAGAAGGT
GGTACGATGTGGGGTATCGGTTAAGTGGTGGGATGACGAGCTGAAAGAAG
AAATAGGGGAACGTAGAGAAGTCTTCAAGCAGTACCTGAGTGAGGCGTCT
GAGGATACTTGAGAAAAGTACAGGGCCAAAGTAAAACAGGTGAAAGGACT
AGTGAAAAAGAAGAAAAAGTGCATTTGGGACGAAGTAGTGCAGAAGGCCA
ACGGAGGCCTGGAGGGGAACGTCAAGCAGATGTGGGAAGGGATAAGAGGA
ATTGTAAAAAAGACCGCGCAAGGGGGGGATACAGGGGTAGCAACTTTGCG
AGGTGTGCACGGTGGACTACCGTAAAAATCGGGGTCTTCGCACACTGTGC
GGTCGCCTTTTTTAATGTCTTCGTTCTTCGCACAGGGGTGCGGAGACGCC
GATATGTGCGGAGACCCCGATACATGTGCGGAAATCGAATTAAATTATTT
GGTTGTACAGTATTATCGCACACCCCGTGCGATGACGCCGATACGTGCGG
TATTGAATAGAATTGAAGGGGGTTAAGGTGGGGTGCTTTGAACGCACACC
CTGTGCGAAGACTCCGATATGTGCGCTCCAAATGAAATCACAGCGGACAT
TGCAGTACTCCACGTGAAAGGTAGTCCTGCATGATCCGTCAAAACACAGG
AAAAAAGCACGCACACACACACGTCGCACACTGTGTTACCAAGCGGCCTC
GTCACGACCCTCACGGGCGGGCAGGCTAAGAATACATAGGTGGCTCCATC
CATCTCACAGCCTACATCTGGCNCGGAAGCGCCCAATCTCATTGCTAGGA
TCGGGGTCTCCGCACAGTGTGCGTAGACCCCGATCCCTGTGCGAGAATCG
AATCAAATCATGTGGAACCCGGTTTTTGTTACGCACCTCTGTGCCATGAC
CCCGACCCGTGCGGAGACTCCGATCCGTGCGAAGACCCCGATTCTTACGG
TAGTCAGCAGTGGGGGGGGGGGGGGGTACNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAA
AACCCAACCCCGATGGCAAAACACCGGGGGGGGGGTCAGCAGTGGGAAGG
GAAAAAAAGAAGCTCTAGCAGGACACTATAATCCAAGAGACTTGGAGTGC
CCTCGGGGAATGAAGTTTTTGACCGAGTGTTCAAGAAGGAGGTGGACGCA
TGGGGTTGTGTGTGAACAAGCTGCAGTGCCACAAAGCAGCAGGAGCGGAT
GGGATAGTCAAGGAGTTCATGAAGTTTGGGGGAAAGGGGATGATCCAGCT
GATGGTACTGCTATACAATTGGGTGTGGAAAAACGAGTATACGCCAAGTA
GATGGAGGGAAGGAGTGGTTGTGAACTTGTTTAAGAAAGGAGACAAGACT
GACCCAGGAAACTACAGGGGGATCACACTGTTGAACACAGTAGGAAAAGT
GTTCTGTAAGCTGCTGAACGATAGGATAGTGGGAGTATTGGAGAAGGAAC
ATAGCATTAGTGAGGGCCAGGCAGGTTTCCGCAAGAAGAGGGGGTGCGTA
GACCACGTGTTCACGGTAGGGAGAATCATCCAAGGTAGAAAGAGGGCGGG
AAAGCCGACGTACTGCTTCTTCCTGGACGTGAAAAGGCATAAGACACCGT
ATGAAGAAATGGGCTGTGGAAATAAGTGTCCAAGTACGGGACCAAGGGGA
AAATGTGGAGAGAGCTGAAGAAGATGACAGAGTGAACGCAAAGCGCGGTC
ATGATAGACGGAGAACTGTCTAAATTCTTCGAC
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Coding sequence (CDS) from alignment at Scaffold_501:257606..260038+

>EsuBft99_22a-0001 ID=EsuBft99_22a-0001|Name=EsuBft99_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1080bp|location=Sequence derived from alignment at Scaffold_501:257606..260038+ (Ectocarpus subulatus male Bft15b)
ATGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACA
TCGACCGATCTAGAAAGAAGGGGAGTAAGAAACAGAGGAAAGCGTTCCGG
TGGAACGTAGAGCGTTTGGGAGACGATGGGACACGGGATGAATTCCAGAA
GGTGGACATACAAGCAGCAGGGGACAGGGTCATTGAAGGGTGGGAGTCCA
TAGTGAACACAACGGCAGAGAGAGTCGTGGGAAAGAAGGTGGTGAAAGGA
CTAGTGAAAAAGAAGAAAAAGTGCATTTGGGACGAAGTAGTGCAGAAGGC
CAACGGAGGCCTGGAGGGGAACGTCAAGCAGATGTGGGAAGGGATAAGAG
GAATTGTAAAAAAGACCGCGCAAGGGGGGGATACAGGGGTAGCAACTTTG
CGAGGAGCGGATGGGATAGTCAAGGAGTTCATGAAGTTTGGGGGAAAGGG
GATGATCCAGCTGATGGTACTGCTATACAATTGGGTGTGGAAAAACGAGT
ATACGCCAAGTAGATGGAGGGAAGGAGTGGTTGTGAACTTGTTTAAGAAA
GGAGACAAGACTGACCCAGGAAACTACAGGGGGATCACACTGTTGAACAC
AGTAGGAAAAGTGTTCTGTAAGCTGCTGAACGATAGGATAGTGGGAGTAT
TGGAGAAGGAACATAGCATTAGTGAGGGCCAGGCAGGTTTCCGCAAGAAG
AGGGGGTGCGTAGACCACGTGTTCACGGTAGGGAGAATCATCCAAGGTAG
AAAGAGGGCGGGAAAGCCGACGTACTGCTTCTTCCTGGACGTGAAAAGGC
ATAAGACACCGTATGAAGAAATGGGCTGTGGAAATAAGTGTCCAAGTACG
GGACCAAGGGGAAAATGTGGAGAGAGCTGA
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