EsuBft995_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft995_10a-0001
Unique Name	EsuBft995_10a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_444	contig	Scaffold_444:75610..78546 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	6669.EFX68856
ProteomeId	EsuBft995_10
Protein domains	IPR004875
Protein domains	PTHR19303
Owner	apollo_admin@sb-roscoff.fr
Note	jerky protein homolog-like os:homo sapiens gn:jrkl pe:2 sv:2 [Automatic annotation]
Nb exon	3
Max annot lvl	33208\|Metazoa
Length	1932
Hectar predicted targeting category	other localisation
Evalue	2.53e-70
EggNOG OGs	KOG3105@1\|root,KOG3105@2759\|Eukaryota,38HJW@33154\|Opisthokonta,3BCG5@33208\|Metazoa,3CXR0@33213\|Bilateria,420II@6656\|Arthropoda
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Jerky protein homolog-like
COG category	BD

Cross References

External references for this mRNA


Database	Accession
GO	0003676

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft995_10a	EsuBft995_10a	Ectocarpus subulatus male Bft15b	gene	Scaffold_444 75610..78546 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft995_10a-0001	EsuBft995_10	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_444 75610..78242 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft995_10a-0001-exon	agat-exon-15855	Ectocarpus subulatus male Bft15b	exon	Scaffold_444 75610..75780 +
EsuBft995_10a-0001-exon	EsuBft995_10a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_444 76379..77352 +
EsuBft995_10a-0001-exon	agat-exon-15857	Ectocarpus subulatus male Bft15b	exon	Scaffold_444 77642..78382 +
EsuBft995_10a-0001-exon	agat-exon-15856	Ectocarpus subulatus male Bft15b	exon	Scaffold_444 78501..78546 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft995_10a-0001-cds	EsuBft995_10a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_444 75610..75780 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft995_10a-0001-exon	agat-three_prime_utr-23877	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_444 78243..78382 +
EsuBft995_10a-0001-exon	agat-three_prime_utr-23878	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_444 78501..78546 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_444:75610..78546+
coding sequence from alignment at Scaffold_444:75610..78546+

spliced messenger RNA

>EsuBft995_10a-0001 ID=EsuBft995_10a-0001|Name=EsuBft995_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1932bp|location=Sequence derived from alignment at Scaffold_444:75610..78546+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGAAGCTGATGGATCAGAAGGTGACTCATGAGCAGCTAGCAGATCG
CTTCAAGTGCTCGGAACGGTTGGTCCGGGATGTGAAGAAGAACAGGAAGA
AGTACGAGACCGAGGCTGCTGCAGGACGCGGAGGAAGCAAGAAAAACGTG
CGCACAGGCAATAATCCGGAGGTGGACGCCATAGCTCTTGACCTACTAGA
GAAAGCCCGGAAGACCAAGATGCCCGTCACGCGCGACGTCCTTCGAAGCT
TCGGCCGTGCCGCCAGGGCAACCCTGCTGGCTGATCCAGCAGCTTCTAAG
GAAGTGAAGGCGAGGGTCGAGGATTTCAAGGCCGGCGAAAGGTGGGCCAG
GAACTTCGTGAAGCGCAACAGCATCGACAGCGTGAGACTTCATGGCGAGG
CTGGTAGCGTCAACAAGGAGGCCATCAAGGAAGCCATGGAGGAACTCAAG
GCCCTTTGCGCAAAGTACCCGGCTAGGCTCATCTTTAACGTCGACGAGAC
AGGCCTCCAGTGGAAGCTCATGCCCAGGCGCACGTACCTCTCCAACTTGG
AGGATCGGAAGACGGCGCGGGGCTCCAAGGGCATGTTCTTCAAGGATCGA
CTGTCTGCCATCATGTGCGCCAATGCCGACGGCACTGCAAAGGTTGACAT
GTCCATCATCGGGAAGGCAAAGGGTCCCCGCTGCTTCAACGACACGCCTT
CACCTCTCAAGTACTTCTCGAAGGCCAACGCCTGGTCCGACACCGCGACT
TTCCGCAAGTGGTGGTGTGAGGTCTTCCTCCCGTTCGTTCGGCGCTTCAC
TCACGAACCTGTGCTGCTTCTGATGGACGGCTGTGCTTCTCACGGTGATC
TAGTGGATGATCGGGGGCAAGTTACCATCAAGTTCTACCCTCCAAACTGC
ACCTCCGTACACCAGCCTATGGATCTGGGGATCATCGCCGAGACAAAGTG
CAACTACAGGAAGGAGCTGCTCGATGTGAAGACATCGACCATGTTGGTGG
CTGACACCCTTCGTGCCGAGGCCAAAGCTCGCAAAATGAAGGCCGGGACA
ATGGGGCTGGCGCAAGGGCACCAACCTCACGTGCGGGATGCCGCTGAACT
TCTCCAGAAAGCATGGGCCAGCGTCACCGCCCAGGACATCGCCAGGTGCT
TTGTCAAAGCCGAGACTCTTCCGGACGAGATGGCCGCTGAGCTCACCAAG
CAATACGGAAAGTCCCAGTTCCACGTCGCCGAGCCTACCTTGAAGGCTCT
CACGGAGACTCTCAACACGTTGAGCACGAGCGTGCACGAGGCGCACAAGC
AGGGTACCCAAATCGAGGACGAGGACATCGCCGAACTCATCGCCGAACTC
CGCATCGAACCCGGAAAGCCGCTCCTGGAGGAAGCGGTGAACGCGATTCA
AGGGTGGGCTACCATCGAGGACGACGATGAAGTGGTTGAGGCTCTCAGAG
AGGATACGGTGGAAGACATGACGGCACAGCTGGCTGGGACTCGAGTGTCT
ACCGGCCGCGAGGAGGAGGACGAGGAGGAGGACAGCGGCGATGACAACAC
GGGGCTCGCGCGCCGTGTCCCACCGGCTTATGGTGAACTGTCGTCTCACT
TCGGCGTCCTGGAAGCGGCAGCAGAGGAGAGCGGCAATGGAGACGCGGCG
CTCTACCTAGCGAAAGCGAAGATGGCGATGATTGCAGCGCATTCCAAGAG
GCGGGTGCGCCAGGCAGACATGAGGGAGTTTGTTGCTACGGAGTAAGGGC
GGGGAACAGCTGTGGCACTAAAAAAACGGTTGTTTGATTTTTGCGGTGCG
CTGCCCGTCGTGCATGTCATTTTTTTTTTCTTGCAACATCGAAGCGGGTG
CGCCAGGCAAACAGGAGAGAATTTGTCCCGACGACATACAGTAATAGTGT
CGATCCATTTCGTTCTTTGTTGGCCCCGTAAG

protein sequence of EsuBft995_10a-0001

>EsuBft995_10 ID=EsuBft995_10|Name=EsuBft995_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=581bp
MLKLMDQKVTHEQLADRFKCSERLVRDVKKNRKKYETEAAAGRGGSKKNV
RTGNNPEVDAIALDLLEKARKTKMPVTRDVLRSFGRAARATLLADPAASK
EVKARVEDFKAGERWARNFVKRNSIDSVRLHGEAGSVNKEAIKEAMEELK
ALCAKYPARLIFNVDETGLQWKLMPRRTYLSNLEDRKTARGSKGMFFKDR
LSAIMCANADGTAKVDMSIIGKAKGPRCFNDTPSPLKYFSKANAWSDTAT
FRKWWCEVFLPFVRRFTHEPVLLLMDGCASHGDLVDDRGQVTIKFYPPNC
TSVHQPMDLGIIAETKCNYRKELLDVKTSTMLVADTLRAEAKARKMKAGT
MGLAQGHQPHVRDAAELLQKAWASVTAQDIARCFVKAETLPDEMAAELTK
QYGKSQFHVAEPTLKALTETLNTLSTSVHEAHKQGTQIEDEDIAELIAEL
RIEPGKPLLEEAVNAIQGWATIEDDDEVVEALREDTVEDMTAQLAGTRVS
TGREEEDEEEDSGDDNTGLARRVPPAYGELSSHFGVLEAAAEESGNGDAA
LYLAKAKMAMIAAHSKRRVRQADMREFVATE

mRNA from alignment at Scaffold_444:75610..78546+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft995_10a-0001 ID=EsuBft995_10a-0001|Name=EsuBft995_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2937bp|location=Sequence derived from alignment at Scaffold_444:75610..78546+ (Ectocarpus subulatus male Bft15b)
ATGCTGAAGCTGATGGATCAGAAGGTGACTCATGAGCAGCTAGCAGATCG
CTTCAAGTGCTCGGAACGGTTGGTCCGGGATGTGAAGAAGAACAGGAAGA
AGTACGAGACCGAGGCTGCTGCAGGACGCGGAGGAAGCAAGAAAAACGTG
CGCACAGGCAATAATCCGGAGGTGCGCTACTCTGCTGTTGTTTTAAAAAA
ATACGCGTAGTTCCCGCGCCTTCTTTGCCTTTTTTTTTTTGCCGGGCCTT
GTTTGCAAAGAGTTTTCGTTTTTGCAAGGACCTTTTTCTGTAGCCTTGTT
CGTCTATCTGATGTTCTTGTTCTTTTTTCTTCTTCTCTTGTCAAGTTGTT
CCCTGTTCTCTGTTCCCTTTCCCCATGTTTCTTCTATTTCTCGACTGTTA
CAGTACTTGTTGAGCTTATTCCCTCTCGTCGTTCGTTTGTGTCTTTTTTT
GTGTTACCTTTTTTTTCAACTTTCTTTGTTGTTTTATCGTTCGTGCGCTG
CTGCGCCAGCATATAAACTGCGAACCAAAAATGTGTACTTGTTTGTACTG
TACTGGTACATTACATCGCACGCACACCTATTCTTTCAAACGAGTTACAA
TACATAAATACACATGCGGATGCAGCGGCGAGCTTCTGTGGTTTTTCAAA
TGCCCGGAAATGTTTCCTTCCCACTACGATGCACTGTGCAACGAGGCTTA
ATGTTCGAAACTAATCGTGCTATCTTTTGTACCCTCTTTATTGTTTACTC
CTCGTTTGACGGTCAATAGGTGGACGCCATAGCTCTTGACCTACTAGAGA
AAGCCCGGAAGACCAAGATGCCCGTCACGCGCGACGTCCTTCGAAGCTTC
GGCCGTGCCGCCAGGGCAACCCTGCTGGCTGATCCAGCAGCTTCTAAGGA
AGTGAAGGCGAGGGTCGAGGATTTCAAGGCCGGCGAAAGGTGGGCCAGGA
ACTTCGTGAAGCGCAACAGCATCGACAGCGTGAGACTTCATGGCGAGGCT
GGTAGCGTCAACAAGGAGGCCATCAAGGAAGCCATGGAGGAACTCAAGGC
CCTTTGCGCAAAGTACCCGGCTAGGCTCATCTTTAACGTCGACGAGACAG
GCCTCCAGTGGAAGCTCATGCCCAGGCGCACGTACCTCTCCAACTTGGAG
GATCGGAAGACGGCGCGGGGCTCCAAGGGCATGTTCTTCAAGGATCGACT
GTCTGCCATCATGTGCGCCAATGCCGACGGCACTGCAAAGGTTGACATGT
CCATCATCGGGAAGGCAAAGGGTCCCCGCTGCTTCAACGACACGCCTTCA
CCTCTCAAGTACTTCTCGAAGGCCAACGCCTGGTCCGACACCGCGACTTT
CCGCAAGTGGTGGTGTGAGGTCTTCCTCCCGTTCGTTCGGCGCTTCACTC
ACGAACCTGTGCTGCTTCTGATGGACGGCTGTGCTTCTCACGGTGATCTA
GTGGATGATCGGGGGCAAGTTACCATCAAGTTCTACCCTCCAAACTGCAC
CTCCGTACACCAGCCTATGGATCTGGGGATCATCGCCGAGACAAAGTGCA
ACTACAGGAAGGAGCTGCTCGATGTGAAGACATCGACCATGTTGGTGGCT
GACACCCTTCGTGCCGAGGCCAAAGCTCGCAAAATGAAGGCCGGGACAAT
GGGGCTGGCGCAAGGGCACCAACCTCACGTGCGGGATGCCGCTGAACTTC
TCCAGAAAGCATGGGCCAGCGTCACCGCCCAGGACATCGCCAGGTGAGGT
TTGAGCATGTGCAATCGCTGTTTATAATGTAAACTGTTCAACTCGCGCCT
TGGTGCACATAGCTTTGGTGGTACAAAGGTAACGTGGGTAAGGTTGTACG
GATAGATTATATTGTTTTCGACTGAGTTTTCCAACATCCGAATACATATC
TTCTTTGCTTTTCGCAAAAACTTGAGTCCTCCCCCGCCTATGAGTCTTTG
ATCGTCCCTGGGTTCATCTAACATCCGCTTGTTGTCCACCCACAAACGTA
TGCATGACATTTTCTGCGCTACCTGGGATCAGGTGCTTTGTCAAAGCCGA
GACTCTTCCGGACGAGATGGCCGCTGAGCTCACCAAGCAATACGGAAAGT
CCCAGTTCCACGTCGCCGAGCCTACCTTGAAGGCTCTCACGGAGACTCTC
AACACGTTGAGCACGAGCGTGCACGAGGCGCACAAGCAGGGTACCCAAAT
CGAGGACGAGGACATCGCCGAACTCATCGCCGAACTCCGCATCGAACCCG
GAAAGCCGCTCCTGGAGGAAGCGGTGAACGCGATTCAAGGGTGGGCTACC
ATCGAGGACGACGATGAAGTGGTTGAGGCTCTCAGAGAGGATACGGTGGA
AGACATGACGGCACAGCTGGCTGGGACTCGAGTGTCTACCGGCCGCGAGG
AGGAGGACGAGGAGGAGGACAGCGGCGATGACAACACGGGGCTCGCGCGC
CGTGTCCCACCGGCTTATGGTGAACTGTCGTCTCACTTCGGCGTCCTGGA
AGCGGCAGCAGAGGAGAGCGGCAATGGAGACGCGGCGCTCTACCTAGCGA
AAGCGAAGATGGCGATGATTGCAGCGCATTCCAAGAGGCGGGTGCGCCAG
GCAGACATGAGGGAGTTTGTTGCTACGGAGTAAGGGCGGGGAACAGCTGT
GGCACTAAAAAAACGGTTGTTTGATTTTTGCGGTGCGCTGCCCGTCGTGC
ATGTCATTTTTTTTTTCTTGCAACATCGAAGCGGGTGCGCCAGGCAAACA
GGAGAGAATTTGTCCCGACGACAGTACACAAATAAGCAAATAAGTGAGGT
GCAGAAGAAAATGAAGAACCAAAGAGCGCCCCAAGACAACAAAAAGAAAA
CTCAACTCTGCCCACGCCCATGCTGGAACTTCACTCAACAGTACAGTAAT
AGTGTCGATCCATTTCGTTCTTTGTTGGCCCCGTAAG

Coding sequence (CDS) from alignment at Scaffold_444:75610..78546+

>EsuBft995_10a-0001 ID=EsuBft995_10a-0001|Name=EsuBft995_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1746bp|location=Sequence derived from alignment at Scaffold_444:75610..78546+ (Ectocarpus subulatus male Bft15b)
ATGCTGAAGCTGATGGATCAGAAGGTGACTCATGAGCAGCTAGCAGATCG
CTTCAAGTGCTCGGAACGGTTGGTCCGGGATGTGAAGAAGAACAGGAAGA
AGTACGAGACCGAGGCTGCTGCAGGACGCGGAGGAAGCAAGAAAAACGTG
CGCACAGGCAATAATCCGGAGGTGGACGCCATAGCTCTTGACCTACTAGA
GAAAGCCCGGAAGACCAAGATGCCCGTCACGCGCGACGTCCTTCGAAGCT
TCGGCCGTGCCGCCAGGGCAACCCTGCTGGCTGATCCAGCAGCTTCTAAG
GAAGTGAAGGCGAGGGTCGAGGATTTCAAGGCCGGCGAAAGGTGGGCCAG
GAACTTCGTGAAGCGCAACAGCATCGACAGCGTGAGACTTCATGGCGAGG
CTGGTAGCGTCAACAAGGAGGCCATCAAGGAAGCCATGGAGGAACTCAAG
GCCCTTTGCGCAAAGTACCCGGCTAGGCTCATCTTTAACGTCGACGAGAC
AGGCCTCCAGTGGAAGCTCATGCCCAGGCGCACGTACCTCTCCAACTTGG
AGGATCGGAAGACGGCGCGGGGCTCCAAGGGCATGTTCTTCAAGGATCGA
CTGTCTGCCATCATGTGCGCCAATGCCGACGGCACTGCAAAGGTTGACAT
GTCCATCATCGGGAAGGCAAAGGGTCCCCGCTGCTTCAACGACACGCCTT
CACCTCTCAAGTACTTCTCGAAGGCCAACGCCTGGTCCGACACCGCGACT
TTCCGCAAGTGGTGGTGTGAGGTCTTCCTCCCGTTCGTTCGGCGCTTCAC
TCACGAACCTGTGCTGCTTCTGATGGACGGCTGTGCTTCTCACGGTGATC
TAGTGGATGATCGGGGGCAAGTTACCATCAAGTTCTACCCTCCAAACTGC
ACCTCCGTACACCAGCCTATGGATCTGGGGATCATCGCCGAGACAAAGTG
CAACTACAGGAAGGAGCTGCTCGATGTGAAGACATCGACCATGTTGGTGG
CTGACACCCTTCGTGCCGAGGCCAAAGCTCGCAAAATGAAGGCCGGGACA
ATGGGGCTGGCGCAAGGGCACCAACCTCACGTGCGGGATGCCGCTGAACT
TCTCCAGAAAGCATGGGCCAGCGTCACCGCCCAGGACATCGCCAGGTGCT
TTGTCAAAGCCGAGACTCTTCCGGACGAGATGGCCGCTGAGCTCACCAAG
CAATACGGAAAGTCCCAGTTCCACGTCGCCGAGCCTACCTTGAAGGCTCT
CACGGAGACTCTCAACACGTTGAGCACGAGCGTGCACGAGGCGCACAAGC
AGGGTACCCAAATCGAGGACGAGGACATCGCCGAACTCATCGCCGAACTC
CGCATCGAACCCGGAAAGCCGCTCCTGGAGGAAGCGGTGAACGCGATTCA
AGGGTGGGCTACCATCGAGGACGACGATGAAGTGGTTGAGGCTCTCAGAG
AGGATACGGTGGAAGACATGACGGCACAGCTGGCTGGGACTCGAGTGTCT
ACCGGCCGCGAGGAGGAGGACGAGGAGGAGGACAGCGGCGATGACAACAC
GGGGCTCGCGCGCCGTGTCCCACCGGCTTATGGTGAACTGTCGTCTCACT
TCGGCGTCCTGGAAGCGGCAGCAGAGGAGAGCGGCAATGGAGACGCGGCG
CTCTACCTAGCGAAAGCGAAGATGGCGATGATTGCAGCGCATTCCAAGAG
GCGGGTGCGCCAGGCAGACATGAGGGAGTTTGTTGCTACGGAGTAA