EsuBft995_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft995_10a-0001
Unique NameEsuBft995_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_444contigScaffold_444:75610..78546 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog6669.EFX68856
ProteomeIdEsuBft995_10
Protein domainsIPR004875
Protein domainsPTHR19303
Ownerapollo_admin@sb-roscoff.fr
Notejerky protein homolog-like os:homo sapiens gn:jrkl pe:2 sv:2 [Automatic annotation]
Nb exon3
Max annot lvl33208|Metazoa
Length1932
Hectar predicted targeting categoryother localisation
Evalue2.53e-70
EggNOG OGsKOG3105@1|root,KOG3105@2759|Eukaryota,38HJW@33154|Opisthokonta,3BCG5@33208|Metazoa,3CXR0@33213|Bilateria,420II@6656|Arthropoda
Date last modified2016-06-14
Date creation2016-06-14
DescriptionJerky protein homolog-like
COG categoryBD
Cross References
External references for this mRNA
DatabaseAccession
GO0003676
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft995_10aEsuBft995_10aEctocarpus subulatus male Bft15bgeneScaffold_444 75610..78546 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft995_10a-0001EsuBft995_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_444 75610..78242 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft995_10a-0001-exonagat-exon-15855Ectocarpus subulatus male Bft15bexonScaffold_444 75610..75780 +
EsuBft995_10a-0001-exonEsuBft995_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_444 76379..77352 +
EsuBft995_10a-0001-exonagat-exon-15857Ectocarpus subulatus male Bft15bexonScaffold_444 77642..78382 +
EsuBft995_10a-0001-exonagat-exon-15856Ectocarpus subulatus male Bft15bexonScaffold_444 78501..78546 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft995_10a-0001-cdsEsuBft995_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_444 75610..75780 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft995_10a-0001-exonagat-three_prime_utr-23877Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_444 78243..78382 +
EsuBft995_10a-0001-exonagat-three_prime_utr-23878Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_444 78501..78546 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft995_10a-0001 ID=EsuBft995_10a-0001|Name=EsuBft995_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1932bp|location=Sequence derived from alignment at Scaffold_444:75610..78546+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGAAGCTGATGGATCAGAAGGTGACTCATGAGCAGCTAGCAGATCG
CTTCAAGTGCTCGGAACGGTTGGTCCGGGATGTGAAGAAGAACAGGAAGA
AGTACGAGACCGAGGCTGCTGCAGGACGCGGAGGAAGCAAGAAAAACGTG
CGCACAGGCAATAATCCGGAGGTGGACGCCATAGCTCTTGACCTACTAGA
GAAAGCCCGGAAGACCAAGATGCCCGTCACGCGCGACGTCCTTCGAAGCT
TCGGCCGTGCCGCCAGGGCAACCCTGCTGGCTGATCCAGCAGCTTCTAAG
GAAGTGAAGGCGAGGGTCGAGGATTTCAAGGCCGGCGAAAGGTGGGCCAG
GAACTTCGTGAAGCGCAACAGCATCGACAGCGTGAGACTTCATGGCGAGG
CTGGTAGCGTCAACAAGGAGGCCATCAAGGAAGCCATGGAGGAACTCAAG
GCCCTTTGCGCAAAGTACCCGGCTAGGCTCATCTTTAACGTCGACGAGAC
AGGCCTCCAGTGGAAGCTCATGCCCAGGCGCACGTACCTCTCCAACTTGG
AGGATCGGAAGACGGCGCGGGGCTCCAAGGGCATGTTCTTCAAGGATCGA
CTGTCTGCCATCATGTGCGCCAATGCCGACGGCACTGCAAAGGTTGACAT
GTCCATCATCGGGAAGGCAAAGGGTCCCCGCTGCTTCAACGACACGCCTT
CACCTCTCAAGTACTTCTCGAAGGCCAACGCCTGGTCCGACACCGCGACT
TTCCGCAAGTGGTGGTGTGAGGTCTTCCTCCCGTTCGTTCGGCGCTTCAC
TCACGAACCTGTGCTGCTTCTGATGGACGGCTGTGCTTCTCACGGTGATC
TAGTGGATGATCGGGGGCAAGTTACCATCAAGTTCTACCCTCCAAACTGC
ACCTCCGTACACCAGCCTATGGATCTGGGGATCATCGCCGAGACAAAGTG
CAACTACAGGAAGGAGCTGCTCGATGTGAAGACATCGACCATGTTGGTGG
CTGACACCCTTCGTGCCGAGGCCAAAGCTCGCAAAATGAAGGCCGGGACA
ATGGGGCTGGCGCAAGGGCACCAACCTCACGTGCGGGATGCCGCTGAACT
TCTCCAGAAAGCATGGGCCAGCGTCACCGCCCAGGACATCGCCAGGTGCT
TTGTCAAAGCCGAGACTCTTCCGGACGAGATGGCCGCTGAGCTCACCAAG
CAATACGGAAAGTCCCAGTTCCACGTCGCCGAGCCTACCTTGAAGGCTCT
CACGGAGACTCTCAACACGTTGAGCACGAGCGTGCACGAGGCGCACAAGC
AGGGTACCCAAATCGAGGACGAGGACATCGCCGAACTCATCGCCGAACTC
CGCATCGAACCCGGAAAGCCGCTCCTGGAGGAAGCGGTGAACGCGATTCA
AGGGTGGGCTACCATCGAGGACGACGATGAAGTGGTTGAGGCTCTCAGAG
AGGATACGGTGGAAGACATGACGGCACAGCTGGCTGGGACTCGAGTGTCT
ACCGGCCGCGAGGAGGAGGACGAGGAGGAGGACAGCGGCGATGACAACAC
GGGGCTCGCGCGCCGTGTCCCACCGGCTTATGGTGAACTGTCGTCTCACT
TCGGCGTCCTGGAAGCGGCAGCAGAGGAGAGCGGCAATGGAGACGCGGCG
CTCTACCTAGCGAAAGCGAAGATGGCGATGATTGCAGCGCATTCCAAGAG
GCGGGTGCGCCAGGCAGACATGAGGGAGTTTGTTGCTACGGAGTAAGGGC
GGGGAACAGCTGTGGCACTAAAAAAACGGTTGTTTGATTTTTGCGGTGCG
CTGCCCGTCGTGCATGTCATTTTTTTTTTCTTGCAACATCGAAGCGGGTG
CGCCAGGCAAACAGGAGAGAATTTGTCCCGACGACATACAGTAATAGTGT
CGATCCATTTCGTTCTTTGTTGGCCCCGTAAG
back to top

protein sequence of EsuBft995_10a-0001

>EsuBft995_10 ID=EsuBft995_10|Name=EsuBft995_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=581bp
MLKLMDQKVTHEQLADRFKCSERLVRDVKKNRKKYETEAAAGRGGSKKNV
RTGNNPEVDAIALDLLEKARKTKMPVTRDVLRSFGRAARATLLADPAASK
EVKARVEDFKAGERWARNFVKRNSIDSVRLHGEAGSVNKEAIKEAMEELK
ALCAKYPARLIFNVDETGLQWKLMPRRTYLSNLEDRKTARGSKGMFFKDR
LSAIMCANADGTAKVDMSIIGKAKGPRCFNDTPSPLKYFSKANAWSDTAT
FRKWWCEVFLPFVRRFTHEPVLLLMDGCASHGDLVDDRGQVTIKFYPPNC
TSVHQPMDLGIIAETKCNYRKELLDVKTSTMLVADTLRAEAKARKMKAGT
MGLAQGHQPHVRDAAELLQKAWASVTAQDIARCFVKAETLPDEMAAELTK
QYGKSQFHVAEPTLKALTETLNTLSTSVHEAHKQGTQIEDEDIAELIAEL
RIEPGKPLLEEAVNAIQGWATIEDDDEVVEALREDTVEDMTAQLAGTRVS
TGREEEDEEEDSGDDNTGLARRVPPAYGELSSHFGVLEAAAEESGNGDAA
LYLAKAKMAMIAAHSKRRVRQADMREFVATE
back to top

mRNA from alignment at Scaffold_444:75610..78546+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft995_10a-0001 ID=EsuBft995_10a-0001|Name=EsuBft995_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2937bp|location=Sequence derived from alignment at Scaffold_444:75610..78546+ (Ectocarpus subulatus male Bft15b)
ATGCTGAAGCTGATGGATCAGAAGGTGACTCATGAGCAGCTAGCAGATCG
CTTCAAGTGCTCGGAACGGTTGGTCCGGGATGTGAAGAAGAACAGGAAGA
AGTACGAGACCGAGGCTGCTGCAGGACGCGGAGGAAGCAAGAAAAACGTG
CGCACAGGCAATAATCCGGAGGTGCGCTACTCTGCTGTTGTTTTAAAAAA
ATACGCGTAGTTCCCGCGCCTTCTTTGCCTTTTTTTTTTTGCCGGGCCTT
GTTTGCAAAGAGTTTTCGTTTTTGCAAGGACCTTTTTCTGTAGCCTTGTT
CGTCTATCTGATGTTCTTGTTCTTTTTTCTTCTTCTCTTGTCAAGTTGTT
CCCTGTTCTCTGTTCCCTTTCCCCATGTTTCTTCTATTTCTCGACTGTTA
CAGTACTTGTTGAGCTTATTCCCTCTCGTCGTTCGTTTGTGTCTTTTTTT
GTGTTACCTTTTTTTTCAACTTTCTTTGTTGTTTTATCGTTCGTGCGCTG
CTGCGCCAGCATATAAACTGCGAACCAAAAATGTGTACTTGTTTGTACTG
TACTGGTACATTACATCGCACGCACACCTATTCTTTCAAACGAGTTACAA
TACATAAATACACATGCGGATGCAGCGGCGAGCTTCTGTGGTTTTTCAAA
TGCCCGGAAATGTTTCCTTCCCACTACGATGCACTGTGCAACGAGGCTTA
ATGTTCGAAACTAATCGTGCTATCTTTTGTACCCTCTTTATTGTTTACTC
CTCGTTTGACGGTCAATAGGTGGACGCCATAGCTCTTGACCTACTAGAGA
AAGCCCGGAAGACCAAGATGCCCGTCACGCGCGACGTCCTTCGAAGCTTC
GGCCGTGCCGCCAGGGCAACCCTGCTGGCTGATCCAGCAGCTTCTAAGGA
AGTGAAGGCGAGGGTCGAGGATTTCAAGGCCGGCGAAAGGTGGGCCAGGA
ACTTCGTGAAGCGCAACAGCATCGACAGCGTGAGACTTCATGGCGAGGCT
GGTAGCGTCAACAAGGAGGCCATCAAGGAAGCCATGGAGGAACTCAAGGC
CCTTTGCGCAAAGTACCCGGCTAGGCTCATCTTTAACGTCGACGAGACAG
GCCTCCAGTGGAAGCTCATGCCCAGGCGCACGTACCTCTCCAACTTGGAG
GATCGGAAGACGGCGCGGGGCTCCAAGGGCATGTTCTTCAAGGATCGACT
GTCTGCCATCATGTGCGCCAATGCCGACGGCACTGCAAAGGTTGACATGT
CCATCATCGGGAAGGCAAAGGGTCCCCGCTGCTTCAACGACACGCCTTCA
CCTCTCAAGTACTTCTCGAAGGCCAACGCCTGGTCCGACACCGCGACTTT
CCGCAAGTGGTGGTGTGAGGTCTTCCTCCCGTTCGTTCGGCGCTTCACTC
ACGAACCTGTGCTGCTTCTGATGGACGGCTGTGCTTCTCACGGTGATCTA
GTGGATGATCGGGGGCAAGTTACCATCAAGTTCTACCCTCCAAACTGCAC
CTCCGTACACCAGCCTATGGATCTGGGGATCATCGCCGAGACAAAGTGCA
ACTACAGGAAGGAGCTGCTCGATGTGAAGACATCGACCATGTTGGTGGCT
GACACCCTTCGTGCCGAGGCCAAAGCTCGCAAAATGAAGGCCGGGACAAT
GGGGCTGGCGCAAGGGCACCAACCTCACGTGCGGGATGCCGCTGAACTTC
TCCAGAAAGCATGGGCCAGCGTCACCGCCCAGGACATCGCCAGGTGAGGT
TTGAGCATGTGCAATCGCTGTTTATAATGTAAACTGTTCAACTCGCGCCT
TGGTGCACATAGCTTTGGTGGTACAAAGGTAACGTGGGTAAGGTTGTACG
GATAGATTATATTGTTTTCGACTGAGTTTTCCAACATCCGAATACATATC
TTCTTTGCTTTTCGCAAAAACTTGAGTCCTCCCCCGCCTATGAGTCTTTG
ATCGTCCCTGGGTTCATCTAACATCCGCTTGTTGTCCACCCACAAACGTA
TGCATGACATTTTCTGCGCTACCTGGGATCAGGTGCTTTGTCAAAGCCGA
GACTCTTCCGGACGAGATGGCCGCTGAGCTCACCAAGCAATACGGAAAGT
CCCAGTTCCACGTCGCCGAGCCTACCTTGAAGGCTCTCACGGAGACTCTC
AACACGTTGAGCACGAGCGTGCACGAGGCGCACAAGCAGGGTACCCAAAT
CGAGGACGAGGACATCGCCGAACTCATCGCCGAACTCCGCATCGAACCCG
GAAAGCCGCTCCTGGAGGAAGCGGTGAACGCGATTCAAGGGTGGGCTACC
ATCGAGGACGACGATGAAGTGGTTGAGGCTCTCAGAGAGGATACGGTGGA
AGACATGACGGCACAGCTGGCTGGGACTCGAGTGTCTACCGGCCGCGAGG
AGGAGGACGAGGAGGAGGACAGCGGCGATGACAACACGGGGCTCGCGCGC
CGTGTCCCACCGGCTTATGGTGAACTGTCGTCTCACTTCGGCGTCCTGGA
AGCGGCAGCAGAGGAGAGCGGCAATGGAGACGCGGCGCTCTACCTAGCGA
AAGCGAAGATGGCGATGATTGCAGCGCATTCCAAGAGGCGGGTGCGCCAG
GCAGACATGAGGGAGTTTGTTGCTACGGAGTAAGGGCGGGGAACAGCTGT
GGCACTAAAAAAACGGTTGTTTGATTTTTGCGGTGCGCTGCCCGTCGTGC
ATGTCATTTTTTTTTTCTTGCAACATCGAAGCGGGTGCGCCAGGCAAACA
GGAGAGAATTTGTCCCGACGACAGTACACAAATAAGCAAATAAGTGAGGT
GCAGAAGAAAATGAAGAACCAAAGAGCGCCCCAAGACAACAAAAAGAAAA
CTCAACTCTGCCCACGCCCATGCTGGAACTTCACTCAACAGTACAGTAAT
AGTGTCGATCCATTTCGTTCTTTGTTGGCCCCGTAAG
back to top

Coding sequence (CDS) from alignment at Scaffold_444:75610..78546+

>EsuBft995_10a-0001 ID=EsuBft995_10a-0001|Name=EsuBft995_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1746bp|location=Sequence derived from alignment at Scaffold_444:75610..78546+ (Ectocarpus subulatus male Bft15b)
ATGCTGAAGCTGATGGATCAGAAGGTGACTCATGAGCAGCTAGCAGATCG
CTTCAAGTGCTCGGAACGGTTGGTCCGGGATGTGAAGAAGAACAGGAAGA
AGTACGAGACCGAGGCTGCTGCAGGACGCGGAGGAAGCAAGAAAAACGTG
CGCACAGGCAATAATCCGGAGGTGGACGCCATAGCTCTTGACCTACTAGA
GAAAGCCCGGAAGACCAAGATGCCCGTCACGCGCGACGTCCTTCGAAGCT
TCGGCCGTGCCGCCAGGGCAACCCTGCTGGCTGATCCAGCAGCTTCTAAG
GAAGTGAAGGCGAGGGTCGAGGATTTCAAGGCCGGCGAAAGGTGGGCCAG
GAACTTCGTGAAGCGCAACAGCATCGACAGCGTGAGACTTCATGGCGAGG
CTGGTAGCGTCAACAAGGAGGCCATCAAGGAAGCCATGGAGGAACTCAAG
GCCCTTTGCGCAAAGTACCCGGCTAGGCTCATCTTTAACGTCGACGAGAC
AGGCCTCCAGTGGAAGCTCATGCCCAGGCGCACGTACCTCTCCAACTTGG
AGGATCGGAAGACGGCGCGGGGCTCCAAGGGCATGTTCTTCAAGGATCGA
CTGTCTGCCATCATGTGCGCCAATGCCGACGGCACTGCAAAGGTTGACAT
GTCCATCATCGGGAAGGCAAAGGGTCCCCGCTGCTTCAACGACACGCCTT
CACCTCTCAAGTACTTCTCGAAGGCCAACGCCTGGTCCGACACCGCGACT
TTCCGCAAGTGGTGGTGTGAGGTCTTCCTCCCGTTCGTTCGGCGCTTCAC
TCACGAACCTGTGCTGCTTCTGATGGACGGCTGTGCTTCTCACGGTGATC
TAGTGGATGATCGGGGGCAAGTTACCATCAAGTTCTACCCTCCAAACTGC
ACCTCCGTACACCAGCCTATGGATCTGGGGATCATCGCCGAGACAAAGTG
CAACTACAGGAAGGAGCTGCTCGATGTGAAGACATCGACCATGTTGGTGG
CTGACACCCTTCGTGCCGAGGCCAAAGCTCGCAAAATGAAGGCCGGGACA
ATGGGGCTGGCGCAAGGGCACCAACCTCACGTGCGGGATGCCGCTGAACT
TCTCCAGAAAGCATGGGCCAGCGTCACCGCCCAGGACATCGCCAGGTGCT
TTGTCAAAGCCGAGACTCTTCCGGACGAGATGGCCGCTGAGCTCACCAAG
CAATACGGAAAGTCCCAGTTCCACGTCGCCGAGCCTACCTTGAAGGCTCT
CACGGAGACTCTCAACACGTTGAGCACGAGCGTGCACGAGGCGCACAAGC
AGGGTACCCAAATCGAGGACGAGGACATCGCCGAACTCATCGCCGAACTC
CGCATCGAACCCGGAAAGCCGCTCCTGGAGGAAGCGGTGAACGCGATTCA
AGGGTGGGCTACCATCGAGGACGACGATGAAGTGGTTGAGGCTCTCAGAG
AGGATACGGTGGAAGACATGACGGCACAGCTGGCTGGGACTCGAGTGTCT
ACCGGCCGCGAGGAGGAGGACGAGGAGGAGGACAGCGGCGATGACAACAC
GGGGCTCGCGCGCCGTGTCCCACCGGCTTATGGTGAACTGTCGTCTCACT
TCGGCGTCCTGGAAGCGGCAGCAGAGGAGAGCGGCAATGGAGACGCGGCG
CTCTACCTAGCGAAAGCGAAGATGGCGATGATTGCAGCGCATTCCAAGAG
GCGGGTGCGCCAGGCAGACATGAGGGAGTTTGTTGCTACGGAGTAA
back to top