EsuBft967_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft967_4a-0001
Unique NameEsuBft967_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_228contigScaffold_228:347299..350005 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft967_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length255
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft967_4aEsuBft967_4aEctocarpus subulatus male Bft15bgeneScaffold_228 347299..350005 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft967_4a-0001EsuBft967_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_228 349592..349873 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft967_4a-0001-exonagat-exon-27617Ectocarpus subulatus male Bft15bexonScaffold_228 347299..347605 -
EsuBft967_4a-0001-exonEsuBft967_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_228 347758..350005 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft967_4a-0001-exonagat-three_prime_utr-23585Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_228 347299..347605 -
EsuBft967_4a-0001-exonagat-three_prime_utr-23586Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_228 347758..349591 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft967_4a-0001-cdsEsuBft967_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_228 349592..349873 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft967_4a-0001-exonagat-five_prime_utr-15344Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_228 349874..350005 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft967_4a-0001 ID=EsuBft967_4a-0001|Name=EsuBft967_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2555bp|location=Sequence derived from alignment at Scaffold_228:347299..350005- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCCTTGATAATGTGAACTTAAGTTAATTGTGTTCCCCCACCCCGCACGCG
GCCCTCCGCTGCCCACACTCGCGAACCTTCCCGCCCGGACGCCGTACAGC
GGTTGGTTGCGAAACAGCACACTGCCTACGACATGGGGAACCATCTACAT
CTTGGCCTACCATACGGATCCACATGTTTCCTCATGGCCTACAAAACGAG
AAAGAACGCTGCTGTTGCTGCTGTTGCTGATGCTGCTACCGCGGACATGG
CCGAACGCATGCATTCACTTCGCGACATTGGCAGGCAAATAGAAGGGGTA
ATGCAAAAGGTCTGTAGAATACCTCCCCCACACCGGTACGCGAGACGCAA
ATATCGACAAACCATCGACGTCCCTGCCATCCCTGCACACTCGCAAACCC
ATGCGCACTGGTAGGCAAGGATTTTCACCTGTAATACTGTGCTCTGCCCT
AGAACGACTACGGTACGAAAGGGACACACGCGAGAACGATCCTCACATAT
TACTTGAGGACTTGGCACAAACAAGAACTCCATGCTCAACATGTCATCAA
AACTCAACACCACAAGCACCATGTGCGAGCCGGAACAAGACCCTACACAA
CAAAAACTTAAGGATGTAGCGGCCCCGAGCAGCCTTGGAGCGGCTACCTG
TAGCTTCACCCTAGGAACTAACATGAGCCCGATGCTAGAGGTTCTCAAGT
GCGGCTATCCAGCACACCCGGTACACCCGGCACTGAACCAAGTATGCCTT
CTTACCGCCTTGTCGACGGGAGAGAGGATTCCATCGCCTGAGGACGCCGG
TACCCATACGTGTCAGCTTATATGTATCGAATTTTCTGAGGGACTAGGGT
GCTCAACGCACCGAATCACCAGCCTCGGGCTGACGGAACAAAAAACAATA
CATAAGCGCTTAGAATAATGTTTTGTTGCATTCGAAAACAAACACCAGTC
TTCGGGGAAAACACACGCTACCCCCGCATTTTTCACCTGCATCGCTTCCT
TTTTCGCTGGTTTTCTCCTGCGAATCGGGCGAAGCAAGCAATAGGGTTGG
TCCATGTCCTGGCTATCAAAAACACATACCACAAATTCATCCACGCAAAT
TATCGACCTTGCGTATCAATACCATCTTCACCGACACACGCAACCCGGCC
CCCTCAAAAGTCCACCCAACATCTACGCAGATCTACGCACGTACGCCAAG
TGCACTCACACTGCTGCTCTAAGGAAAACAGGAGTACCCCCGCCCCACCC
GTCGCAGAAGGGAGACACGAGACTCGGGTGCATTCTTGAGGCGAACAAAG
AGCAGCACGCACGCTACACCCCAACAAAAAAGACACGCACAATTCACAAA
ACAAAACAAGGAAGACGCACCGCGGAGTGCTGGACTCGCCCGGCCTTCGT
GAAACGCTCTCCGTACAAACACCCTGTCTTATTTTCATCAAATAGCGGCG
TAAAAACCGAACTTCTGCGCACAGCAGTGCAAAAGTTAAAACCAAGACTA
GAAACCGATCGTCAAAATAAAAAAATACACATTCCAGATACATTCAAAGA
CGATATTTTATGCCCAGAGACGCATAACGCCTGGATCCTGACCAGGCACA
CCACGCCTTGATGTCATCGGATACAAAATAACTCGCACATGACATCAGTA
AACCAGTACCGTAGATCATGACGTAAGACATCACACACCCCTGGATCGTT
TTTCACAGCTCCATTGATCTACGACAAAGAGGCTGTACAACTGCAACGTT
TCGGAAGATCCTCGATTACAAGACGGTTCCGACCGCCGCTAATCTCGCAC
CGCCACCTATTCTGCTGGGGATATATGCCGGGCTTCGAAAATGAGCCCAG
GAGGTGTGATATCTCTTGATAACATGCTGCACTCACTTGCTGATGCGAAC
AACCAACGAAGCGGAACACTCTCGGTTGGCTTTCTGTCACCTCAGACCGC
CAGTATCGCTCACGATACTTGCGCAATCATCTCCTACCGTAATCCCGATA
ACAACACTAGGTTTTTCCTGATAGCCTCCAACACCACCGGTGCCGCCGCT
GTCAACCAAACTAGGCGCGAACACCCCTCCCCCCCCGCCCCTAACAAACA
AGATATTCCAATACACCGGCGTATCGCATCCTATAGATAACAGGCAAACG
GGGGACGCCGCATCACGACCAGGCAACACCCGAGCCCACGAATTCGCGCA
AACCGTGTTCCGTCTTTCTCGCGGCTAAGAAAAAGGTGCACGCGAGAGGT
ACACCCCGTGCCGTCTTCTCCACCACTGTACCCCGGCCTTCCACTGTCTG
TTCGCCAAATAAAAGTACTTCCGAGAGGTACACCCGGTGCCGTCTTCACC
GCTAGCCCGGCCCACAACCTTCTCGCCGAAAAAGGGTACACCAGAGAGGT
AAACACCGTGCCGTCTTCTCCGCTAGAGGCCAACCTATTCATAGGGGAAG
AGGTACACGGCAGAGGTACACACCGCGTCATGCCTTCCCCGTCCGTCGCC
AATAAACAGGCAAGAGAGTGGAGAAGAGGTACAACACCAAAAGAGGTACA
ATACC
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protein sequence of EsuBft967_4a-0001

>EsuBft967_4 ID=EsuBft967_4|Name=EsuBft967_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=93bp
MGNHLHLGLPYGSTCFLMAYKTRKNAAVAAVADAATADMAERMHSLRDIG
RQIEGVMQKVCRIPPPHRYARRKYRQTIDVPAIPAHSQTHAHW
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mRNA from alignment at Scaffold_228:347299..350005-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft967_4a-0001 ID=EsuBft967_4a-0001|Name=EsuBft967_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2707bp|location=Sequence derived from alignment at Scaffold_228:347299..350005- (Ectocarpus subulatus male Bft15b)
CCCTTGATAATGTGAACTTAAGTTAATTGTGTTCCCCCACCCCGCACGCG
GCCCTCCGCTGCCCACACTCGCGAACCTTCCCGCCCGGACGCCGTACAGC
GGTTGGTTGCGAAACAGCACACTGCCTACGACATGGGGAACCATCTACAT
CTTGGCCTACCATACGGATCCACATGTTTCCTCATGGCCTACAAAACGAG
AAAGAACGCTGCTGTTGCTGCTGTTGCTGATGCTGCTACCGCGGACATGG
CCGAACGCATGCATTCACTTCGCGACATTGGCAGGCAAATAGAAGGGGTA
ATGCAAAAGGTCTGTAGAATACCTCCCCCACACCGGTACGCGAGACGCAA
ATATCGACAAACCATCGACGTCCCTGCCATCCCTGCACACTCGCAAACCC
ATGCGCACTGGTAGGCAAGGATTTTCACCTGTAATACTGTGCTCTGCCCT
AGAACGACTACGGTACGAAAGGGACACACGCGAGAACGATCCTCACATAT
TACTTGAGGACTTGGCACAAACAAGAACTCCATGCTCAACATGTCATCAA
AACTCAACACCACAAGCACCATGTGCGAGCCGGAACAAGACCCTACACAA
CAAAAACTTAAGGATGTAGCGGCCCCGAGCAGCCTTGGAGCGGCTACCTG
TAGCTTCACCCTAGGAACTAACATGAGCCCGATGCTAGAGGTTCTCAAGT
GCGGCTATCCAGCACACCCGGTACACCCGGCACTGAACCAAGTATGCCTT
CTTACCGCCTTGTCGACGGGAGAGAGGATTCCATCGCCTGAGGACGCCGG
TACCCATACGTGTCAGCTTATATGTATCGAATTTTCTGAGGGACTAGGGT
GCTCAACGCACCGAATCACCAGCCTCGGGCTGACGGAACAAAAAACAATA
CATAAGCGCTTAGAATAATGTTTTGTTGCATTCGAAAACAAACACCAGTC
TTCGGGGAAAACACACGCTACCCCCGCATTTTTCACCTGCATCGCTTCCT
TTTTCGCTGGTTTTCTCCTGCGAATCGGGCGAAGCAAGCAATAGGGTTGG
TCCATGTCCTGGCTATCAAAAACACATACCACAAATTCATCCACGCAAAT
TATCGACCTTGCGTATCAATACCATCTTCACCGACACACGCAACCCGGCC
CCCTCAAAAGTCCACCCAACATCTACGCAGATCTACGCACGTACGCCAAG
TGCACTCACACTGCTGCTCTAAGGAAAACAGGAGTACCCCCGCCCCACCC
GTCGCAGAAGGGAGACACGAGACTCGGGTGCATTCTTGAGGCGAACAAAG
AGCAGCACGCACGCTACACCCCAACAAAAAAGACACGCACAATTCACAAA
ACAAAACAAGGAAGACGCACCGCGGAGTGCTGGACTCGCCCGGCCTTCGT
GAAACGCTCTCCGTACAAACACCCTGTCTTATTTTCATCAAATAGCGGCG
TAAAAACCGAACTTCTGCGCACAGCAGTGCAAAAGTTAAAACCAAGACTA
GAAACCGATCGTCAAAATAAAAAAATACACATTCCAGATACATTCAAAGA
CGATATTTTATGCCCAGAGACGCATAACGCCTGGATCCTGACCAGGCACA
CCACGCCTTGATGTCATCGGATACAAAATAACTCGCACATGACATCAGTA
AACCAGTACCGTAGATCATGACGTAAGACATCACACACCCCTGGATCGTT
TTTCACAGCTCCATTGATCTACGACAAAGAGGCTGTACAACTGCAACGTT
TCGGAAGATCCTCGATTACAAGACGGTTCCGACCGCCGCTAATCTCGCAC
CGCCACCTATTCTGCTGGGGATATATGCCGGGCTTCGAAAATGAGCCCAG
GAGGTGTGATATCTCTTGATAACATGCTGCACTCACTTGCTGATGCGAAC
AACCAACGAAGCGGAACACTCTCGGTTGGCTTTCTGTCACCTCAGACCGC
CAGTATCGCTCACGATACTTGCGCAATCATCTCCTACCGTAATCCCGATA
ACAACACTAGGTTTTTCCTGATAGCCTCCAACACCACCGGTGCCGCCGCT
GTCAACCAAACTAGGCGCGAACACCCCTCCCCCCCCGCCCCTAACAAACA
AGATATTCCAATACACCGGCGTATCGCATCCTATAGATAACAGGCAAACG
GGGGACGCCGCATCACGACCAGGCAACACCCGAGCCCACGAATTCGCGCA
AACCGTGTTCCGTCTTTCTCGCGGCTAAGAAAAAGGTGCACGCGAGAGGT
ACACCCCGTGCCGTCTTCCCCGCTAGCCAGGCCTTCCAACTGTATATTTG
CCAAATAAAGGTACTCCCGAGGGGTACACCTCGTGCCGTCCTCTCCGCTG
GCCGGGCCCTCCACTGCTGTATATTTGCCAAATAAAAGTACTCCCGAGAG
GTACACCCCGTGCCGTCTTCTCCACCACTGTACCCCGGCCTTCCACTGTC
TGTTCGCCAAATAAAAGTACTTCCGAGAGGTACACCCGGTGCCGTCTTCA
CCGCTAGCCCGGCCCACAACCTTCTCGCCGAAAAAGGGTACACCAGAGAG
GTAAACACCGTGCCGTCTTCTCCGCTAGAGGCCAACCTATTCATAGGGGA
AGAGGTACACGGCAGAGGTACACACCGCGTCATGCCTTCCCCGTCCGTCG
CCAATAAACAGGCAAGAGAGTGGAGAAGAGGTACAACACCAAAAGAGGTA
CAATACC
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Coding sequence (CDS) from alignment at Scaffold_228:347299..350005-

>EsuBft967_4a-0001 ID=EsuBft967_4a-0001|Name=EsuBft967_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=282bp|location=Sequence derived from alignment at Scaffold_228:347299..350005- (Ectocarpus subulatus male Bft15b)
ATGGGGAACCATCTACATCTTGGCCTACCATACGGATCCACATGTTTCCT
CATGGCCTACAAAACGAGAAAGAACGCTGCTGTTGCTGCTGTTGCTGATG
CTGCTACCGCGGACATGGCCGAACGCATGCATTCACTTCGCGACATTGGC
AGGCAAATAGAAGGGGTAATGCAAAAGGTCTGTAGAATACCTCCCCCACA
CCGGTACGCGAGACGCAAATATCGACAAACCATCGACGTCCCTGCCATCC
CTGCACACTCGCAAACCCATGCGCACTGGTAG
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