EsuBft967_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft967_4a-0001
Unique Name	EsuBft967_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_228	contig	Scaffold_228:347299..350005 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft967_4
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	255
Hectar predicted targeting category	other localisation
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft967_4a	EsuBft967_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_228 347299..350005 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft967_4a-0001	EsuBft967_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_228 349592..349873 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft967_4a-0001-exon	agat-exon-27617	Ectocarpus subulatus male Bft15b	exon	Scaffold_228 347299..347605 -
EsuBft967_4a-0001-exon	EsuBft967_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_228 347758..350005 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft967_4a-0001-exon	agat-three_prime_utr-23585	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_228 347299..347605 -
EsuBft967_4a-0001-exon	agat-three_prime_utr-23586	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_228 347758..349591 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft967_4a-0001-cds	EsuBft967_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_228 349592..349873 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft967_4a-0001-exon	agat-five_prime_utr-15344	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_228 349874..350005 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_228:347299..350005-
coding sequence from alignment at Scaffold_228:347299..350005-

spliced messenger RNA

>EsuBft967_4a-0001 ID=EsuBft967_4a-0001|Name=EsuBft967_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2555bp|location=Sequence derived from alignment at Scaffold_228:347299..350005- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCCTTGATAATGTGAACTTAAGTTAATTGTGTTCCCCCACCCCGCACGCG
GCCCTCCGCTGCCCACACTCGCGAACCTTCCCGCCCGGACGCCGTACAGC
GGTTGGTTGCGAAACAGCACACTGCCTACGACATGGGGAACCATCTACAT
CTTGGCCTACCATACGGATCCACATGTTTCCTCATGGCCTACAAAACGAG
AAAGAACGCTGCTGTTGCTGCTGTTGCTGATGCTGCTACCGCGGACATGG
CCGAACGCATGCATTCACTTCGCGACATTGGCAGGCAAATAGAAGGGGTA
ATGCAAAAGGTCTGTAGAATACCTCCCCCACACCGGTACGCGAGACGCAA
ATATCGACAAACCATCGACGTCCCTGCCATCCCTGCACACTCGCAAACCC
ATGCGCACTGGTAGGCAAGGATTTTCACCTGTAATACTGTGCTCTGCCCT
AGAACGACTACGGTACGAAAGGGACACACGCGAGAACGATCCTCACATAT
TACTTGAGGACTTGGCACAAACAAGAACTCCATGCTCAACATGTCATCAA
AACTCAACACCACAAGCACCATGTGCGAGCCGGAACAAGACCCTACACAA
CAAAAACTTAAGGATGTAGCGGCCCCGAGCAGCCTTGGAGCGGCTACCTG
TAGCTTCACCCTAGGAACTAACATGAGCCCGATGCTAGAGGTTCTCAAGT
GCGGCTATCCAGCACACCCGGTACACCCGGCACTGAACCAAGTATGCCTT
CTTACCGCCTTGTCGACGGGAGAGAGGATTCCATCGCCTGAGGACGCCGG
TACCCATACGTGTCAGCTTATATGTATCGAATTTTCTGAGGGACTAGGGT
GCTCAACGCACCGAATCACCAGCCTCGGGCTGACGGAACAAAAAACAATA
CATAAGCGCTTAGAATAATGTTTTGTTGCATTCGAAAACAAACACCAGTC
TTCGGGGAAAACACACGCTACCCCCGCATTTTTCACCTGCATCGCTTCCT
TTTTCGCTGGTTTTCTCCTGCGAATCGGGCGAAGCAAGCAATAGGGTTGG
TCCATGTCCTGGCTATCAAAAACACATACCACAAATTCATCCACGCAAAT
TATCGACCTTGCGTATCAATACCATCTTCACCGACACACGCAACCCGGCC
CCCTCAAAAGTCCACCCAACATCTACGCAGATCTACGCACGTACGCCAAG
TGCACTCACACTGCTGCTCTAAGGAAAACAGGAGTACCCCCGCCCCACCC
GTCGCAGAAGGGAGACACGAGACTCGGGTGCATTCTTGAGGCGAACAAAG
AGCAGCACGCACGCTACACCCCAACAAAAAAGACACGCACAATTCACAAA
ACAAAACAAGGAAGACGCACCGCGGAGTGCTGGACTCGCCCGGCCTTCGT
GAAACGCTCTCCGTACAAACACCCTGTCTTATTTTCATCAAATAGCGGCG
TAAAAACCGAACTTCTGCGCACAGCAGTGCAAAAGTTAAAACCAAGACTA
GAAACCGATCGTCAAAATAAAAAAATACACATTCCAGATACATTCAAAGA
CGATATTTTATGCCCAGAGACGCATAACGCCTGGATCCTGACCAGGCACA
CCACGCCTTGATGTCATCGGATACAAAATAACTCGCACATGACATCAGTA
AACCAGTACCGTAGATCATGACGTAAGACATCACACACCCCTGGATCGTT
TTTCACAGCTCCATTGATCTACGACAAAGAGGCTGTACAACTGCAACGTT
TCGGAAGATCCTCGATTACAAGACGGTTCCGACCGCCGCTAATCTCGCAC
CGCCACCTATTCTGCTGGGGATATATGCCGGGCTTCGAAAATGAGCCCAG
GAGGTGTGATATCTCTTGATAACATGCTGCACTCACTTGCTGATGCGAAC
AACCAACGAAGCGGAACACTCTCGGTTGGCTTTCTGTCACCTCAGACCGC
CAGTATCGCTCACGATACTTGCGCAATCATCTCCTACCGTAATCCCGATA
ACAACACTAGGTTTTTCCTGATAGCCTCCAACACCACCGGTGCCGCCGCT
GTCAACCAAACTAGGCGCGAACACCCCTCCCCCCCCGCCCCTAACAAACA
AGATATTCCAATACACCGGCGTATCGCATCCTATAGATAACAGGCAAACG
GGGGACGCCGCATCACGACCAGGCAACACCCGAGCCCACGAATTCGCGCA
AACCGTGTTCCGTCTTTCTCGCGGCTAAGAAAAAGGTGCACGCGAGAGGT
ACACCCCGTGCCGTCTTCTCCACCACTGTACCCCGGCCTTCCACTGTCTG
TTCGCCAAATAAAAGTACTTCCGAGAGGTACACCCGGTGCCGTCTTCACC
GCTAGCCCGGCCCACAACCTTCTCGCCGAAAAAGGGTACACCAGAGAGGT
AAACACCGTGCCGTCTTCTCCGCTAGAGGCCAACCTATTCATAGGGGAAG
AGGTACACGGCAGAGGTACACACCGCGTCATGCCTTCCCCGTCCGTCGCC
AATAAACAGGCAAGAGAGTGGAGAAGAGGTACAACACCAAAAGAGGTACA
ATACC

protein sequence of EsuBft967_4a-0001

>EsuBft967_4 ID=EsuBft967_4|Name=EsuBft967_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=93bp
MGNHLHLGLPYGSTCFLMAYKTRKNAAVAAVADAATADMAERMHSLRDIG
RQIEGVMQKVCRIPPPHRYARRKYRQTIDVPAIPAHSQTHAHW

mRNA from alignment at Scaffold_228:347299..350005-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft967_4a-0001 ID=EsuBft967_4a-0001|Name=EsuBft967_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2707bp|location=Sequence derived from alignment at Scaffold_228:347299..350005- (Ectocarpus subulatus male Bft15b)
CCCTTGATAATGTGAACTTAAGTTAATTGTGTTCCCCCACCCCGCACGCG
GCCCTCCGCTGCCCACACTCGCGAACCTTCCCGCCCGGACGCCGTACAGC
GGTTGGTTGCGAAACAGCACACTGCCTACGACATGGGGAACCATCTACAT
CTTGGCCTACCATACGGATCCACATGTTTCCTCATGGCCTACAAAACGAG
AAAGAACGCTGCTGTTGCTGCTGTTGCTGATGCTGCTACCGCGGACATGG
CCGAACGCATGCATTCACTTCGCGACATTGGCAGGCAAATAGAAGGGGTA
ATGCAAAAGGTCTGTAGAATACCTCCCCCACACCGGTACGCGAGACGCAA
ATATCGACAAACCATCGACGTCCCTGCCATCCCTGCACACTCGCAAACCC
ATGCGCACTGGTAGGCAAGGATTTTCACCTGTAATACTGTGCTCTGCCCT
AGAACGACTACGGTACGAAAGGGACACACGCGAGAACGATCCTCACATAT
TACTTGAGGACTTGGCACAAACAAGAACTCCATGCTCAACATGTCATCAA
AACTCAACACCACAAGCACCATGTGCGAGCCGGAACAAGACCCTACACAA
CAAAAACTTAAGGATGTAGCGGCCCCGAGCAGCCTTGGAGCGGCTACCTG
TAGCTTCACCCTAGGAACTAACATGAGCCCGATGCTAGAGGTTCTCAAGT
GCGGCTATCCAGCACACCCGGTACACCCGGCACTGAACCAAGTATGCCTT
CTTACCGCCTTGTCGACGGGAGAGAGGATTCCATCGCCTGAGGACGCCGG
TACCCATACGTGTCAGCTTATATGTATCGAATTTTCTGAGGGACTAGGGT
GCTCAACGCACCGAATCACCAGCCTCGGGCTGACGGAACAAAAAACAATA
CATAAGCGCTTAGAATAATGTTTTGTTGCATTCGAAAACAAACACCAGTC
TTCGGGGAAAACACACGCTACCCCCGCATTTTTCACCTGCATCGCTTCCT
TTTTCGCTGGTTTTCTCCTGCGAATCGGGCGAAGCAAGCAATAGGGTTGG
TCCATGTCCTGGCTATCAAAAACACATACCACAAATTCATCCACGCAAAT
TATCGACCTTGCGTATCAATACCATCTTCACCGACACACGCAACCCGGCC
CCCTCAAAAGTCCACCCAACATCTACGCAGATCTACGCACGTACGCCAAG
TGCACTCACACTGCTGCTCTAAGGAAAACAGGAGTACCCCCGCCCCACCC
GTCGCAGAAGGGAGACACGAGACTCGGGTGCATTCTTGAGGCGAACAAAG
AGCAGCACGCACGCTACACCCCAACAAAAAAGACACGCACAATTCACAAA
ACAAAACAAGGAAGACGCACCGCGGAGTGCTGGACTCGCCCGGCCTTCGT
GAAACGCTCTCCGTACAAACACCCTGTCTTATTTTCATCAAATAGCGGCG
TAAAAACCGAACTTCTGCGCACAGCAGTGCAAAAGTTAAAACCAAGACTA
GAAACCGATCGTCAAAATAAAAAAATACACATTCCAGATACATTCAAAGA
CGATATTTTATGCCCAGAGACGCATAACGCCTGGATCCTGACCAGGCACA
CCACGCCTTGATGTCATCGGATACAAAATAACTCGCACATGACATCAGTA
AACCAGTACCGTAGATCATGACGTAAGACATCACACACCCCTGGATCGTT
TTTCACAGCTCCATTGATCTACGACAAAGAGGCTGTACAACTGCAACGTT
TCGGAAGATCCTCGATTACAAGACGGTTCCGACCGCCGCTAATCTCGCAC
CGCCACCTATTCTGCTGGGGATATATGCCGGGCTTCGAAAATGAGCCCAG
GAGGTGTGATATCTCTTGATAACATGCTGCACTCACTTGCTGATGCGAAC
AACCAACGAAGCGGAACACTCTCGGTTGGCTTTCTGTCACCTCAGACCGC
CAGTATCGCTCACGATACTTGCGCAATCATCTCCTACCGTAATCCCGATA
ACAACACTAGGTTTTTCCTGATAGCCTCCAACACCACCGGTGCCGCCGCT
GTCAACCAAACTAGGCGCGAACACCCCTCCCCCCCCGCCCCTAACAAACA
AGATATTCCAATACACCGGCGTATCGCATCCTATAGATAACAGGCAAACG
GGGGACGCCGCATCACGACCAGGCAACACCCGAGCCCACGAATTCGCGCA
AACCGTGTTCCGTCTTTCTCGCGGCTAAGAAAAAGGTGCACGCGAGAGGT
ACACCCCGTGCCGTCTTCCCCGCTAGCCAGGCCTTCCAACTGTATATTTG
CCAAATAAAGGTACTCCCGAGGGGTACACCTCGTGCCGTCCTCTCCGCTG
GCCGGGCCCTCCACTGCTGTATATTTGCCAAATAAAAGTACTCCCGAGAG
GTACACCCCGTGCCGTCTTCTCCACCACTGTACCCCGGCCTTCCACTGTC
TGTTCGCCAAATAAAAGTACTTCCGAGAGGTACACCCGGTGCCGTCTTCA
CCGCTAGCCCGGCCCACAACCTTCTCGCCGAAAAAGGGTACACCAGAGAG
GTAAACACCGTGCCGTCTTCTCCGCTAGAGGCCAACCTATTCATAGGGGA
AGAGGTACACGGCAGAGGTACACACCGCGTCATGCCTTCCCCGTCCGTCG
CCAATAAACAGGCAAGAGAGTGGAGAAGAGGTACAACACCAAAAGAGGTA
CAATACC

Coding sequence (CDS) from alignment at Scaffold_228:347299..350005-

>EsuBft967_4a-0001 ID=EsuBft967_4a-0001|Name=EsuBft967_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=282bp|location=Sequence derived from alignment at Scaffold_228:347299..350005- (Ectocarpus subulatus male Bft15b)
ATGGGGAACCATCTACATCTTGGCCTACCATACGGATCCACATGTTTCCT
CATGGCCTACAAAACGAGAAAGAACGCTGCTGTTGCTGCTGTTGCTGATG
CTGCTACCGCGGACATGGCCGAACGCATGCATTCACTTCGCGACATTGGC
AGGCAAATAGAAGGGGTAATGCAAAAGGTCTGTAGAATACCTCCCCCACA
CCGGTACGCGAGACGCAAATATCGACAAACCATCGACGTCCCTGCCATCC
CTGCACACTCGCAAACCCATGCGCACTGGTAG