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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D8LCF0 |
| ProteomeId | EsuBft663_18 |
| Protein domains | PTHR11524 |
| Protein domains | Coil |
| Protein domains | IPR018038 |
| Protein domains | IPR005998 |
| Protein domains | IPR012988 |
| Protein domains | IPR016082 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | 60s ribosomal protein l7 os:gallus gallus gn:rpl7 pe:2 sv:1 [Automatic annotation] |
| Nb exon | 4 |
| Max annot lvl | 2759|Eukaryota |
| Length | 1141 |
| Hectar predicted targeting category | other localisation |
| Evalue | 2.45e-163 |
| EggNOG OGs | COG1841@1|root,KOG3184@2759|Eukaryota |
| Ec32 ortholog description | Ribosomal protein L30, ferredoxin-like fold domain |
| Ec32 ortholog | Ec-26_004750.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Preferred name | RPL7 |
| KEGG ko | ko:K02937,ko:K08819,ko:K19933 |
| KEGG Pathway | ko03010,map03010 |
| KEGG Module | M00177 |
| GOs | GO:0000172,GO:0000184,GO:0000447,GO:0000460,GO:0000462,GO:0000463,GO:0000466,GO:0000469,GO:0000470,GO:0000478,GO:0000479,GO:0000956,GO:0001889,GO:0002165,GO:0002181,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005732,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0007275,GO:0008033,GO:0008097,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009791,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022613,GO:0022625,GO:0022626,GO:0030016,GO:0030017,GO:0030312,GO:0030490,GO:0030684,GO:0030687,GO:0031090,GO:0031099,GO:0031100,GO:0031672,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035073,GO:0035210,GO:0042254,GO:0042273,GO:0042274,GO:0042788,GO:0042802,GO:0042803,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043292,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044449,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0046983,GO:0048513,GO:0048519,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060255,GO:0061008,GO:0065007,GO:0070013,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0097421,GO:0098588,GO:0098805,GO:0099080,GO:0099081,GO:0099512,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902494,GO:1905267,GO:1990904 |
| EC | 2.7.11.22,2.7.11.23 |
| Description | maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
| COG category | J |
| BRITE | br01610,ko00000,ko00001,ko00002,ko01000,ko01001,ko03011,ko04131 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0042273 |
| GO | 0000184 |
| GO | 0004571 |
| GO | 0005773 |
| GO | 0005730 |
| GO | 0070062 |
| GO | 0009506 |
| GO | 0006614 |
| GO | 0009507 |
| GO | 0006415 |
| GO | 0003333 |
| GO | 0006414 |
| GO | 0003677 |
| GO | 0006413 |
| GO | 0019083 |
| GO | 0022625 |
| GO | 0042803 |
| GO | 0001510 |
| GO | 0003735 |
| GO | 0006364 |
| GO | 0003729 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft663_18a-0001 ID=EsuBft663_18a-0001|Name=EsuBft663_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1141bp|location=Sequence derived from alignment at Scaffold_189:247175..250459+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TTCACTCTCTCTTTTTGTTCTGCAAAAGCGGGTACCCCTAGCAACCATGC
CGGCCGCTGTCAGCAAGGAGAGCAAGCCCATCATCCCTGAGTCGGTGCTC
AAGAAGCGCCGCACGAAGGAGGCCATCGCCGCCAAGCAGGCCGCCAAGCA
GGAGGCCGACCAGAAGGCGGCTGCCGCCAAGAAGACCGAGATCTTCGAGC
GTGCCGAGCGCTACGTCAAGGAGTACCGCGCCCAGGAGAACGACTCGATC
CGCTTCCGCCGCGAGGCCAAGGCGGCGGGTAACATCCACGTCCCGGCTGA
GGCCGGTGTGGTGATTGTCGTCCGCATCCGCGGTATCATCGGCGTGTCCC
CCAAGGTGCGCAAGATCCTGCAGCTCCTCCGCCTGCGCCAGATCAACAAC
TCGGTCTTCGTCAAGCTCAACGCCGCGACCGTCAAGATGCTGCGCCTCGT
GGAGCCCTACGTGGCGTACGGGTACCCCAACCTGAAGACGGTGCGCGAGC
TCATCTACAAGCGCGGGTTCGGAAAGGTGAACAAGCAGCGCATCCCCATC
TCGGACAACTCCGTGATCGAGGGCACCCTCGGCAAGGCCGGCATCATCTG
CGTGGAGGACCTGATCCACGAGATATACACCGTGGGCCCCAACTTCAAGG
CGGCCAACAACTTCCTGTGGCCCTTCAAGCTCTCCAACCCTAACGGCGGC
TTCCGCCAGAAGCTCCTCCACTTCAACGAGGGCGGGGACGCGGGGCAGCG
CGGCGTTAAGATCAACGCCCTCATCAAGCGCATGCTCTAATTTTTGGAAA
TGGTCGTGGTTTTGCTGCTGCTGTCGCGATTGCAAGCGTGGCCGCTACCG
TGCTTTTGGGGTCTTGTTGGCGGTTCTTATTACCCGCGGTAGCTTGGTGT
TGCAGCACGAGCTTGGTGGAAGAGTGCAGGGAACCGGGGGGATTCCAAGG
GGGCGGTGTTGTCGTCGTTTGACGTTGGTAGAAGCCCCGGCTTTCGTTGT
GCTCCTTTCTGTTGGCGCATTTGCTTTGGCATTTGGTTGCAAACCCAGCA
CACCGTTTGTGTGACGCATGAACGAAGAACAAAAAGAGATAAAAATTAAC
ACACGGCTGCGTGCGCGCGTGGCGCGGGCATGGCAGTGAGA back to topprotein sequence of EsuBft663_18a-0001 >EsuBft663_18 ID=EsuBft663_18|Name=EsuBft663_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=247bp
MPAAVSKESKPIIPESVLKKRRTKEAIAAKQAAKQEADQKAAAAKKTEIF
ERAERYVKEYRAQENDSIRFRREAKAAGNIHVPAEAGVVIVVRIRGIIGV
SPKVRKILQLLRLRQINNSVFVKLNAATVKMLRLVEPYVAYGYPNLKTVR
ELIYKRGFGKVNKQRIPISDNSVIEGTLGKAGIICVEDLIHEIYTVGPNF
KAANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGVKINALIKRML back to topmRNA from alignment at Scaffold_189:247175..250459+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft663_18a-0001 ID=EsuBft663_18a-0001|Name=EsuBft663_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3285bp|location=Sequence derived from alignment at Scaffold_189:247175..250459+ (Ectocarpus subulatus male Bft15b)
TTCACTCTCTCTTTTTGTTCTGCAAAAGCGGGTACCCCTAGCAACCATGC
CGGCCGCTGTCAGCAAGGAGAGCAAGCCCATCATCCCTGAGTCGGTGCTC
AAGAAGCGCCGCACGAAGGAGGCCATCGCCGCCAAGCAGGCCGCCAAGCA
GGAGGCCGACCAGAAGGTACGATGAGTTTCTCTTGGCCTCACCGCAGAAA
TCGAGTGGTGTGGCGACACCTCTAGGTGTCCTCCTCTCTCTGCTGGGAGG
ATCAAGGAGGAAGGCGCTGCCTAGCACGCCGTGCTACACCATCTTCTTTC
AACAGGAGCACCACACCCGCTACCCTTGCCTTTGCCCGCGCTGCTGGTTT
AAATCCCTCCGTGGTCTAACCAGCGCGCGGGCTGCTGCTGCTGCGTCCGG
CGGTGGACAGCAGGGCAGCGCTATGTTGCAGCCAATGCTAGTCCCGACTC
CCATGGAGCGCAGCTAGAAGTTCGATCAGCTTTGGTGCACTCATGCAGTC
TCCCTGTCACGAGGTTCAAATTTCCCTGCGTGGTCTAACCCGGACATCGG
AACACTACGTGCACACACAAGAAGCGTAGATAGGGCCAAGGTAGTTTTCT
CATCCCGATTCAGCATCGGATGGCTCCTGTAGGGCGACATCTTTGGCATC
CAACACAAGTCTCTTGCCCGAACGGTTTAAATTTCCCTCCGTGGTCTAAC
CCGAGGGTGAGAGACGCGGCAGCCTCGTGTGGCCACACCCCTACCGCGCG
GTGAAAATGGGGAGATGATAGGTGTGTGCACATGTATCTTTGCTCCTTGA
CTATGATCACCCCAACAAACGCTCGCTGCTGTGTAGACTAAACTGAGTCT
ATGCTTTCTATATGCATGCATGTGCATGTCGTGTACTGCTGTAGACGGCT
GTTACGCAGGTGTCCATGTCTCCATCCTTTTTTTGAGAACTCTACATGTA
AATTACTGCTGCCACGGTCTGTTTTTGGGGCCAAGCGGCCAGAGATTCCC
CACGCTTGTGTAGGCGGATGGCAGTAGCTGCTGCTGTGGACAGGGCGTCG
GCAAGCACAACACAACCCGTTATATCGTACAAGCACAGCACACATTTTGA
TTTGCAGGTCTTCTAACGCTGTCTTACCACATGAGAGCAGGGAGCCTCTC
TGGAACTGGTAGCTTGCACTCACGGCAGATGGCTTTTGAAGAAGGCGATT
ATCCTCGCAAAGATGCAAGCTACAGTTTCTCGTAGCATAGGTTCTCTCGC
GAAACTGGTAATGCCTAGAAGTTCGTACGTAAACACCATTAAGACTGCCC
AACCATCTTGATTTTCGCCGTACATAAAAGTATGATTTTCTCATGGCTTT
GCTTGCCGTCGATTTTTTGCCATCAACTCGTTTCTCGTTGTCGGGGTGAA
AACGAACAACACAGGCGGCTGCCGCCAAGAAGACCGAGATCTTCGAGCGT
GCCGAGCGCTACGTCAAGGAGTACCGCGCCCAGGAGAACGACTCGATCCG
CTTCCGCCGCGAGGCCAAGGCGGCGGGTAACATCCACGTCCCGGCTGAGG
TGTGTGCACACACTTGCTGCGTTCATTCGGGCAGTCTTATTCGGTTGATG
AGCTTAACAGCAGTCTTGGCAGCACTCTCTGTGCGGTACGATAGGGGTTA
TACCCTGGTTCTCGAGGTGGCGGTTGGTGTGCATGGTGCACTCCACGCCC
CGGCCGTCTCAGTCGAGGTCCAGGCGACCTCGCTATTTCACCCGTGTCGT
ATCGTACTCTGCATTCGGTTGTGACTATTTGGCTCCAAGCCATGGGCGAT
TAATTCTTTCGTCTGGTTTCTTGACTTGCCAGAAAAATACCTCGAAAAGC
ATATCCAGCTTCACACCTCAGATGTGGGCATCTTGTGAAAGCTGTCAGAC
TACGCTCATGTAGCTGCATTCTCGCGTGCGACACCTGATCAGTCAGCTCT
CGGCGTCATTCAATTTTTTTTTCTCCCATCATTGGACTCTATGTTGGGCA
TCAATTGATGATTTACTCGCATGTGTTTCTTGCTCTCTCCAGGCGACATT
AATTCCTTGTTCTGGAAGTAGATCACGCAACTAACCTTTCGTGCATGACA
TGCCGTCTTCTCCTTTCATCTCCTCGAACCCCGCCTTCCTGCTCACTTAT
TTTGCCGGTCCTTTTTTTCAGGCCGGTGTGGTGATTGTCGTCCGCATCCG
CGGTATCATCGGCGTGTCCCCCAAGGTGCGCAAGATCCTGCAGCTCCTCC
GCCTGCGCCAGATCAACAACTCGGTCTTCGTCAAGCTCAACGCCGCGACC
GTCAAGATGCTGCGCCTCGTGGAGCCCTACGTGGCGTACGGGTACCCCAA
CCTGAAGACGGTGCGCGAGCTCATCTACAAGCGCGGGTTCGGAAAGGTGT
GTGAAAGAGGGGAACCTCAAGTGTTTTTTATAGTATTTACAGTCACAGCA
AGGCTAAAATAATACCCCCTTTCAAGAGAATACTACAGCAGTCGAGGCAT
CAAGCGTACGACGTGTATTACCGTTGCTGCGAGTGCCGTTTCCTAGTGAT
GAATTCGATCTGGTTCGTTCTACTCGTAGTATGGATTCAAGGCGCCCATC
GATTGAAGTATGATGATGCATACGCTGGCCACCTCATGCTCAGGAGTTTC
CCCTGATTTCTTTGCCGCAGGTGAACAAGCAGCGCATCCCCATCTCGGAC
AACTCCGTGATCGAGGGCACCCTCGGCAAGGCCGGCATCATCTGCGTGGA
GGACCTGATCCACGAGATATACACCGTGGGCCCCAACTTCAAGGCGGCCA
ACAACTTCCTGTGGCCCTTCAAGCTCTCCAACCCTAACGGCGGCTTCCGC
CAGAAGCTCCTCCACTTCAACGAGGGCGGGGACGCGGGGCAGCGCGGCGT
TAAGATCAACGCCCTCATCAAGCGCATGCTCTAATTTTTGGAAATGGTCG
TGGTTTTGCTGCTGCTGTCGCGATTGCAAGCGTGGCCGCTACCGTGCTTT
TGGGGTCTTGTTGGCGGTTCTTATTACCCGCGGTAGCTTGGTGTTGCAGC
ACGAGCTTGGTGGAAGAGTGCAGGGAACCGGGGGGATTCCAAGGGGGCGG
TGTTGTCGTCGTTTGACGTTGGTAGAAGCCCCGGCTTTCGTTGTGCTCCT
TTCTGTTGGCGCATTTGCTTTGGCATTTGGTTGCAAACCCAGCACACCGT
TTGTGTGACGCATGAACGAAGAACAAAAAGAGATAAAAATTAACACACGG
CTGCGTGCGCGCGTGGCGCGGGCATGGCAGTGAGA back to topCoding sequence (CDS) from alignment at Scaffold_189:247175..250459+ >EsuBft663_18a-0001 ID=EsuBft663_18a-0001|Name=EsuBft663_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=744bp|location=Sequence derived from alignment at Scaffold_189:247175..250459+ (Ectocarpus subulatus male Bft15b)
ATGCCGGCCGCTGTCAGCAAGGAGAGCAAGCCCATCATCCCTGAGTCGGT
GCTCAAGAAGCGCCGCACGAAGGAGGCCATCGCCGCCAAGCAGGCCGCCA
AGCAGGAGGCCGACCAGAAGGCGGCTGCCGCCAAGAAGACCGAGATCTTC
GAGCGTGCCGAGCGCTACGTCAAGGAGTACCGCGCCCAGGAGAACGACTC
GATCCGCTTCCGCCGCGAGGCCAAGGCGGCGGGTAACATCCACGTCCCGG
CTGAGGCCGGTGTGGTGATTGTCGTCCGCATCCGCGGTATCATCGGCGTG
TCCCCCAAGGTGCGCAAGATCCTGCAGCTCCTCCGCCTGCGCCAGATCAA
CAACTCGGTCTTCGTCAAGCTCAACGCCGCGACCGTCAAGATGCTGCGCC
TCGTGGAGCCCTACGTGGCGTACGGGTACCCCAACCTGAAGACGGTGCGC
GAGCTCATCTACAAGCGCGGGTTCGGAAAGGTGAACAAGCAGCGCATCCC
CATCTCGGACAACTCCGTGATCGAGGGCACCCTCGGCAAGGCCGGCATCA
TCTGCGTGGAGGACCTGATCCACGAGATATACACCGTGGGCCCCAACTTC
AAGGCGGCCAACAACTTCCTGTGGCCCTTCAAGCTCTCCAACCCTAACGG
CGGCTTCCGCCAGAAGCTCCTCCACTTCAACGAGGGCGGGGACGCGGGGC
AGCGCGGCGTTAAGATCAACGCCCTCATCAAGCGCATGCTCTAA back to top
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