EsuBft663_18a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
Seed ortholog	2880.D8LCF0
ProteomeId	EsuBft663_18
Protein domains	PTHR11524
Protein domains	Coil
Protein domains	IPR018038
Protein domains	IPR005998
Protein domains	IPR012988
Protein domains	IPR016082
Owner	apollo_admin@sb-roscoff.fr
Note	60s ribosomal protein l7 os:gallus gallus gn:rpl7 pe:2 sv:1 [Automatic annotation]
Nb exon	4
Max annot lvl	2759\|Eukaryota
Length	1141
Hectar predicted targeting category	other localisation
Evalue	2.45e-163
EggNOG OGs	COG1841@1\|root,KOG3184@2759\|Eukaryota
Ec32 ortholog description	Ribosomal protein L30, ferredoxin-like fold domain
Ec32 ortholog	Ec-26_004750.1
Date last modified	2016-06-14
Date creation	2016-06-14
Preferred name	RPL7
KEGG ko	ko:K02937,ko:K08819,ko:K19933
KEGG Pathway	ko03010,map03010
KEGG Module	M00177
GOs	GO:0000172,GO:0000184,GO:0000447,GO:0000460,GO:0000462,GO:0000463,GO:0000466,GO:0000469,GO:0000470,GO:0000478,GO:0000479,GO:0000956,GO:0001889,GO:0002165,GO:0002181,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005732,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0007275,GO:0008033,GO:0008097,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009791,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022613,GO:0022625,GO:0022626,GO:0030016,GO:0030017,GO:0030312,GO:0030490,GO:0030684,GO:0030687,GO:0031090,GO:0031099,GO:0031100,GO:0031672,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035073,GO:0035210,GO:0042254,GO:0042273,GO:0042274,GO:0042788,GO:0042802,GO:0042803,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043292,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044449,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0046983,GO:0048513,GO:0048519,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060255,GO:0061008,GO:0065007,GO:0070013,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0097421,GO:0098588,GO:0098805,GO:0099080,GO:0099081,GO:0099512,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902494,GO:1905267,GO:1990904
EC	2.7.11.22,2.7.11.23
Description	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
COG category	J
BRITE	br01610,ko00000,ko00001,ko00002,ko01000,ko01001,ko03011,ko04131

Cross References

External references for this mRNA


Database	Accession
GO	0042273
GO	0000184
GO	0004571
GO	0005773
GO	0005730
GO	0070062
GO	0009506
GO	0006614
GO	0009507
GO	0006415
GO	0003333
GO	0006414
GO	0003677
GO	0006413
GO	0019083
GO	0022625
GO	0042803
GO	0001510
GO	0003735
GO	0006364
GO	0003729

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_189:247175..250459+
coding sequence from alignment at Scaffold_189:247175..250459+

spliced messenger RNA

>EsuBft663_18a-0001 ID=EsuBft663_18a-0001|Name=EsuBft663_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1141bp|location=Sequence derived from alignment at Scaffold_189:247175..250459+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTCACTCTCTCTTTTTGTTCTGCAAAAGCGGGTACCCCTAGCAACCATGC
CGGCCGCTGTCAGCAAGGAGAGCAAGCCCATCATCCCTGAGTCGGTGCTC
AAGAAGCGCCGCACGAAGGAGGCCATCGCCGCCAAGCAGGCCGCCAAGCA
GGAGGCCGACCAGAAGGCGGCTGCCGCCAAGAAGACCGAGATCTTCGAGC
GTGCCGAGCGCTACGTCAAGGAGTACCGCGCCCAGGAGAACGACTCGATC
CGCTTCCGCCGCGAGGCCAAGGCGGCGGGTAACATCCACGTCCCGGCTGA
GGCCGGTGTGGTGATTGTCGTCCGCATCCGCGGTATCATCGGCGTGTCCC
CCAAGGTGCGCAAGATCCTGCAGCTCCTCCGCCTGCGCCAGATCAACAAC
TCGGTCTTCGTCAAGCTCAACGCCGCGACCGTCAAGATGCTGCGCCTCGT
GGAGCCCTACGTGGCGTACGGGTACCCCAACCTGAAGACGGTGCGCGAGC
TCATCTACAAGCGCGGGTTCGGAAAGGTGAACAAGCAGCGCATCCCCATC
TCGGACAACTCCGTGATCGAGGGCACCCTCGGCAAGGCCGGCATCATCTG
CGTGGAGGACCTGATCCACGAGATATACACCGTGGGCCCCAACTTCAAGG
CGGCCAACAACTTCCTGTGGCCCTTCAAGCTCTCCAACCCTAACGGCGGC
TTCCGCCAGAAGCTCCTCCACTTCAACGAGGGCGGGGACGCGGGGCAGCG
CGGCGTTAAGATCAACGCCCTCATCAAGCGCATGCTCTAATTTTTGGAAA
TGGTCGTGGTTTTGCTGCTGCTGTCGCGATTGCAAGCGTGGCCGCTACCG
TGCTTTTGGGGTCTTGTTGGCGGTTCTTATTACCCGCGGTAGCTTGGTGT
TGCAGCACGAGCTTGGTGGAAGAGTGCAGGGAACCGGGGGGATTCCAAGG
GGGCGGTGTTGTCGTCGTTTGACGTTGGTAGAAGCCCCGGCTTTCGTTGT
GCTCCTTTCTGTTGGCGCATTTGCTTTGGCATTTGGTTGCAAACCCAGCA
CACCGTTTGTGTGACGCATGAACGAAGAACAAAAAGAGATAAAAATTAAC
ACACGGCTGCGTGCGCGCGTGGCGCGGGCATGGCAGTGAGA

protein sequence of EsuBft663_18a-0001

>EsuBft663_18 ID=EsuBft663_18|Name=EsuBft663_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=247bp
MPAAVSKESKPIIPESVLKKRRTKEAIAAKQAAKQEADQKAAAAKKTEIF
ERAERYVKEYRAQENDSIRFRREAKAAGNIHVPAEAGVVIVVRIRGIIGV
SPKVRKILQLLRLRQINNSVFVKLNAATVKMLRLVEPYVAYGYPNLKTVR
ELIYKRGFGKVNKQRIPISDNSVIEGTLGKAGIICVEDLIHEIYTVGPNF
KAANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGVKINALIKRML

mRNA from alignment at Scaffold_189:247175..250459+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft663_18a-0001 ID=EsuBft663_18a-0001|Name=EsuBft663_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3285bp|location=Sequence derived from alignment at Scaffold_189:247175..250459+ (Ectocarpus subulatus male Bft15b)
TTCACTCTCTCTTTTTGTTCTGCAAAAGCGGGTACCCCTAGCAACCATGC
CGGCCGCTGTCAGCAAGGAGAGCAAGCCCATCATCCCTGAGTCGGTGCTC
AAGAAGCGCCGCACGAAGGAGGCCATCGCCGCCAAGCAGGCCGCCAAGCA
GGAGGCCGACCAGAAGGTACGATGAGTTTCTCTTGGCCTCACCGCAGAAA
TCGAGTGGTGTGGCGACACCTCTAGGTGTCCTCCTCTCTCTGCTGGGAGG
ATCAAGGAGGAAGGCGCTGCCTAGCACGCCGTGCTACACCATCTTCTTTC
AACAGGAGCACCACACCCGCTACCCTTGCCTTTGCCCGCGCTGCTGGTTT
AAATCCCTCCGTGGTCTAACCAGCGCGCGGGCTGCTGCTGCTGCGTCCGG
CGGTGGACAGCAGGGCAGCGCTATGTTGCAGCCAATGCTAGTCCCGACTC
CCATGGAGCGCAGCTAGAAGTTCGATCAGCTTTGGTGCACTCATGCAGTC
TCCCTGTCACGAGGTTCAAATTTCCCTGCGTGGTCTAACCCGGACATCGG
AACACTACGTGCACACACAAGAAGCGTAGATAGGGCCAAGGTAGTTTTCT
CATCCCGATTCAGCATCGGATGGCTCCTGTAGGGCGACATCTTTGGCATC
CAACACAAGTCTCTTGCCCGAACGGTTTAAATTTCCCTCCGTGGTCTAAC
CCGAGGGTGAGAGACGCGGCAGCCTCGTGTGGCCACACCCCTACCGCGCG
GTGAAAATGGGGAGATGATAGGTGTGTGCACATGTATCTTTGCTCCTTGA
CTATGATCACCCCAACAAACGCTCGCTGCTGTGTAGACTAAACTGAGTCT
ATGCTTTCTATATGCATGCATGTGCATGTCGTGTACTGCTGTAGACGGCT
GTTACGCAGGTGTCCATGTCTCCATCCTTTTTTTGAGAACTCTACATGTA
AATTACTGCTGCCACGGTCTGTTTTTGGGGCCAAGCGGCCAGAGATTCCC
CACGCTTGTGTAGGCGGATGGCAGTAGCTGCTGCTGTGGACAGGGCGTCG
GCAAGCACAACACAACCCGTTATATCGTACAAGCACAGCACACATTTTGA
TTTGCAGGTCTTCTAACGCTGTCTTACCACATGAGAGCAGGGAGCCTCTC
TGGAACTGGTAGCTTGCACTCACGGCAGATGGCTTTTGAAGAAGGCGATT
ATCCTCGCAAAGATGCAAGCTACAGTTTCTCGTAGCATAGGTTCTCTCGC
GAAACTGGTAATGCCTAGAAGTTCGTACGTAAACACCATTAAGACTGCCC
AACCATCTTGATTTTCGCCGTACATAAAAGTATGATTTTCTCATGGCTTT
GCTTGCCGTCGATTTTTTGCCATCAACTCGTTTCTCGTTGTCGGGGTGAA
AACGAACAACACAGGCGGCTGCCGCCAAGAAGACCGAGATCTTCGAGCGT
GCCGAGCGCTACGTCAAGGAGTACCGCGCCCAGGAGAACGACTCGATCCG
CTTCCGCCGCGAGGCCAAGGCGGCGGGTAACATCCACGTCCCGGCTGAGG
TGTGTGCACACACTTGCTGCGTTCATTCGGGCAGTCTTATTCGGTTGATG
AGCTTAACAGCAGTCTTGGCAGCACTCTCTGTGCGGTACGATAGGGGTTA
TACCCTGGTTCTCGAGGTGGCGGTTGGTGTGCATGGTGCACTCCACGCCC
CGGCCGTCTCAGTCGAGGTCCAGGCGACCTCGCTATTTCACCCGTGTCGT
ATCGTACTCTGCATTCGGTTGTGACTATTTGGCTCCAAGCCATGGGCGAT
TAATTCTTTCGTCTGGTTTCTTGACTTGCCAGAAAAATACCTCGAAAAGC
ATATCCAGCTTCACACCTCAGATGTGGGCATCTTGTGAAAGCTGTCAGAC
TACGCTCATGTAGCTGCATTCTCGCGTGCGACACCTGATCAGTCAGCTCT
CGGCGTCATTCAATTTTTTTTTCTCCCATCATTGGACTCTATGTTGGGCA
TCAATTGATGATTTACTCGCATGTGTTTCTTGCTCTCTCCAGGCGACATT
AATTCCTTGTTCTGGAAGTAGATCACGCAACTAACCTTTCGTGCATGACA
TGCCGTCTTCTCCTTTCATCTCCTCGAACCCCGCCTTCCTGCTCACTTAT
TTTGCCGGTCCTTTTTTTCAGGCCGGTGTGGTGATTGTCGTCCGCATCCG
CGGTATCATCGGCGTGTCCCCCAAGGTGCGCAAGATCCTGCAGCTCCTCC
GCCTGCGCCAGATCAACAACTCGGTCTTCGTCAAGCTCAACGCCGCGACC
GTCAAGATGCTGCGCCTCGTGGAGCCCTACGTGGCGTACGGGTACCCCAA
CCTGAAGACGGTGCGCGAGCTCATCTACAAGCGCGGGTTCGGAAAGGTGT
GTGAAAGAGGGGAACCTCAAGTGTTTTTTATAGTATTTACAGTCACAGCA
AGGCTAAAATAATACCCCCTTTCAAGAGAATACTACAGCAGTCGAGGCAT
CAAGCGTACGACGTGTATTACCGTTGCTGCGAGTGCCGTTTCCTAGTGAT
GAATTCGATCTGGTTCGTTCTACTCGTAGTATGGATTCAAGGCGCCCATC
GATTGAAGTATGATGATGCATACGCTGGCCACCTCATGCTCAGGAGTTTC
CCCTGATTTCTTTGCCGCAGGTGAACAAGCAGCGCATCCCCATCTCGGAC
AACTCCGTGATCGAGGGCACCCTCGGCAAGGCCGGCATCATCTGCGTGGA
GGACCTGATCCACGAGATATACACCGTGGGCCCCAACTTCAAGGCGGCCA
ACAACTTCCTGTGGCCCTTCAAGCTCTCCAACCCTAACGGCGGCTTCCGC
CAGAAGCTCCTCCACTTCAACGAGGGCGGGGACGCGGGGCAGCGCGGCGT
TAAGATCAACGCCCTCATCAAGCGCATGCTCTAATTTTTGGAAATGGTCG
TGGTTTTGCTGCTGCTGTCGCGATTGCAAGCGTGGCCGCTACCGTGCTTT
TGGGGTCTTGTTGGCGGTTCTTATTACCCGCGGTAGCTTGGTGTTGCAGC
ACGAGCTTGGTGGAAGAGTGCAGGGAACCGGGGGGATTCCAAGGGGGCGG
TGTTGTCGTCGTTTGACGTTGGTAGAAGCCCCGGCTTTCGTTGTGCTCCT
TTCTGTTGGCGCATTTGCTTTGGCATTTGGTTGCAAACCCAGCACACCGT
TTGTGTGACGCATGAACGAAGAACAAAAAGAGATAAAAATTAACACACGG
CTGCGTGCGCGCGTGGCGCGGGCATGGCAGTGAGA

Coding sequence (CDS) from alignment at Scaffold_189:247175..250459+

>EsuBft663_18a-0001 ID=EsuBft663_18a-0001|Name=EsuBft663_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=744bp|location=Sequence derived from alignment at Scaffold_189:247175..250459+ (Ectocarpus subulatus male Bft15b)
ATGCCGGCCGCTGTCAGCAAGGAGAGCAAGCCCATCATCCCTGAGTCGGT
GCTCAAGAAGCGCCGCACGAAGGAGGCCATCGCCGCCAAGCAGGCCGCCA
AGCAGGAGGCCGACCAGAAGGCGGCTGCCGCCAAGAAGACCGAGATCTTC
GAGCGTGCCGAGCGCTACGTCAAGGAGTACCGCGCCCAGGAGAACGACTC
GATCCGCTTCCGCCGCGAGGCCAAGGCGGCGGGTAACATCCACGTCCCGG
CTGAGGCCGGTGTGGTGATTGTCGTCCGCATCCGCGGTATCATCGGCGTG
TCCCCCAAGGTGCGCAAGATCCTGCAGCTCCTCCGCCTGCGCCAGATCAA
CAACTCGGTCTTCGTCAAGCTCAACGCCGCGACCGTCAAGATGCTGCGCC
TCGTGGAGCCCTACGTGGCGTACGGGTACCCCAACCTGAAGACGGTGCGC
GAGCTCATCTACAAGCGCGGGTTCGGAAAGGTGAACAAGCAGCGCATCCC
CATCTCGGACAACTCCGTGATCGAGGGCACCCTCGGCAAGGCCGGCATCA
TCTGCGTGGAGGACCTGATCCACGAGATATACACCGTGGGCCCCAACTTC
AAGGCGGCCAACAACTTCCTGTGGCCCTTCAAGCTCTCCAACCCTAACGG
CGGCTTCCGCCAGAAGCTCCTCCACTTCAACGAGGGCGGGGACGCGGGGC
AGCGCGGCGTTAAGATCAACGCCCTCATCAAGCGCATGCTCTAA