EsuBft663_18a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft663_18a-0001
Unique NameEsuBft663_18a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_189contigScaffold_189:247175..250459 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LCF0
ProteomeIdEsuBft663_18
Protein domainsPTHR11524
Protein domainsCoil
Protein domainsIPR018038
Protein domainsIPR005998
Protein domainsIPR012988
Protein domainsIPR016082
Ownerapollo_admin@sb-roscoff.fr
Note60s ribosomal protein l7 os:gallus gallus gn:rpl7 pe:2 sv:1 [Automatic annotation]
Nb exon4
Max annot lvl2759|Eukaryota
Length1141
Hectar predicted targeting categoryother localisation
Evalue2.45e-163
EggNOG OGsCOG1841@1|root,KOG3184@2759|Eukaryota
Ec32 ortholog descriptionRibosomal protein L30, ferredoxin-like fold domain
Ec32 orthologEc-26_004750.1
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameRPL7
KEGG koko:K02937,ko:K08819,ko:K19933
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0000172,GO:0000184,GO:0000447,GO:0000460,GO:0000462,GO:0000463,GO:0000466,GO:0000469,GO:0000470,GO:0000478,GO:0000479,GO:0000956,GO:0001889,GO:0002165,GO:0002181,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005732,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0007275,GO:0008033,GO:0008097,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009791,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022613,GO:0022625,GO:0022626,GO:0030016,GO:0030017,GO:0030312,GO:0030490,GO:0030684,GO:0030687,GO:0031090,GO:0031099,GO:0031100,GO:0031672,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035073,GO:0035210,GO:0042254,GO:0042273,GO:0042274,GO:0042788,GO:0042802,GO:0042803,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043292,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044449,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0046983,GO:0048513,GO:0048519,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060255,GO:0061008,GO:0065007,GO:0070013,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0097421,GO:0098588,GO:0098805,GO:0099080,GO:0099081,GO:0099512,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902494,GO:1905267,GO:1990904
EC2.7.11.22,2.7.11.23
Descriptionmaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01001,ko03011,ko04131
Cross References
External references for this mRNA
DatabaseAccession
GO0042273
GO0000184
GO0004571
GO0005773
GO0005730
GO0070062
GO0009506
GO0006614
GO0009507
GO0006415
GO0003333
GO0006414
GO0003677
GO0006413
GO0019083
GO0022625
GO0042803
GO0001510
GO0003735
GO0006364
GO0003729
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft663_18aEsuBft663_18aEctocarpus subulatus male Bft15bgeneScaffold_189 247175..250459 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft663_18a-0001EsuBft663_18Ectocarpus subulatus male Bft15bpolypeptideScaffold_189 247221..250108 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft663_18a-0001-exonEsuBft663_18a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_189 247175..247340 +
EsuBft663_18a-0001-exonagat-exon-81093Ectocarpus subulatus male Bft15bexonScaffold_189 248589..248723 +
EsuBft663_18a-0001-exonagat-exon-81091Ectocarpus subulatus male Bft15bexonScaffold_189 249346..249570 +
EsuBft663_18a-0001-exonagat-exon-81092Ectocarpus subulatus male Bft15bexonScaffold_189 249845..250459 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft663_18a-0001-exonagat-five_prime_utr-12724Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_189 247175..247220 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft663_18a-0001-cdsEsuBft663_18a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_189 247221..247340 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft663_18a-0001-exonagat-three_prime_utr-19916Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_189 250109..250459 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft663_18a-0001 ID=EsuBft663_18a-0001|Name=EsuBft663_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1141bp|location=Sequence derived from alignment at Scaffold_189:247175..250459+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTCACTCTCTCTTTTTGTTCTGCAAAAGCGGGTACCCCTAGCAACCATGC
CGGCCGCTGTCAGCAAGGAGAGCAAGCCCATCATCCCTGAGTCGGTGCTC
AAGAAGCGCCGCACGAAGGAGGCCATCGCCGCCAAGCAGGCCGCCAAGCA
GGAGGCCGACCAGAAGGCGGCTGCCGCCAAGAAGACCGAGATCTTCGAGC
GTGCCGAGCGCTACGTCAAGGAGTACCGCGCCCAGGAGAACGACTCGATC
CGCTTCCGCCGCGAGGCCAAGGCGGCGGGTAACATCCACGTCCCGGCTGA
GGCCGGTGTGGTGATTGTCGTCCGCATCCGCGGTATCATCGGCGTGTCCC
CCAAGGTGCGCAAGATCCTGCAGCTCCTCCGCCTGCGCCAGATCAACAAC
TCGGTCTTCGTCAAGCTCAACGCCGCGACCGTCAAGATGCTGCGCCTCGT
GGAGCCCTACGTGGCGTACGGGTACCCCAACCTGAAGACGGTGCGCGAGC
TCATCTACAAGCGCGGGTTCGGAAAGGTGAACAAGCAGCGCATCCCCATC
TCGGACAACTCCGTGATCGAGGGCACCCTCGGCAAGGCCGGCATCATCTG
CGTGGAGGACCTGATCCACGAGATATACACCGTGGGCCCCAACTTCAAGG
CGGCCAACAACTTCCTGTGGCCCTTCAAGCTCTCCAACCCTAACGGCGGC
TTCCGCCAGAAGCTCCTCCACTTCAACGAGGGCGGGGACGCGGGGCAGCG
CGGCGTTAAGATCAACGCCCTCATCAAGCGCATGCTCTAATTTTTGGAAA
TGGTCGTGGTTTTGCTGCTGCTGTCGCGATTGCAAGCGTGGCCGCTACCG
TGCTTTTGGGGTCTTGTTGGCGGTTCTTATTACCCGCGGTAGCTTGGTGT
TGCAGCACGAGCTTGGTGGAAGAGTGCAGGGAACCGGGGGGATTCCAAGG
GGGCGGTGTTGTCGTCGTTTGACGTTGGTAGAAGCCCCGGCTTTCGTTGT
GCTCCTTTCTGTTGGCGCATTTGCTTTGGCATTTGGTTGCAAACCCAGCA
CACCGTTTGTGTGACGCATGAACGAAGAACAAAAAGAGATAAAAATTAAC
ACACGGCTGCGTGCGCGCGTGGCGCGGGCATGGCAGTGAGA
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protein sequence of EsuBft663_18a-0001

>EsuBft663_18 ID=EsuBft663_18|Name=EsuBft663_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=247bp
MPAAVSKESKPIIPESVLKKRRTKEAIAAKQAAKQEADQKAAAAKKTEIF
ERAERYVKEYRAQENDSIRFRREAKAAGNIHVPAEAGVVIVVRIRGIIGV
SPKVRKILQLLRLRQINNSVFVKLNAATVKMLRLVEPYVAYGYPNLKTVR
ELIYKRGFGKVNKQRIPISDNSVIEGTLGKAGIICVEDLIHEIYTVGPNF
KAANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGVKINALIKRML
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mRNA from alignment at Scaffold_189:247175..250459+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft663_18a-0001 ID=EsuBft663_18a-0001|Name=EsuBft663_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3285bp|location=Sequence derived from alignment at Scaffold_189:247175..250459+ (Ectocarpus subulatus male Bft15b)
TTCACTCTCTCTTTTTGTTCTGCAAAAGCGGGTACCCCTAGCAACCATGC
CGGCCGCTGTCAGCAAGGAGAGCAAGCCCATCATCCCTGAGTCGGTGCTC
AAGAAGCGCCGCACGAAGGAGGCCATCGCCGCCAAGCAGGCCGCCAAGCA
GGAGGCCGACCAGAAGGTACGATGAGTTTCTCTTGGCCTCACCGCAGAAA
TCGAGTGGTGTGGCGACACCTCTAGGTGTCCTCCTCTCTCTGCTGGGAGG
ATCAAGGAGGAAGGCGCTGCCTAGCACGCCGTGCTACACCATCTTCTTTC
AACAGGAGCACCACACCCGCTACCCTTGCCTTTGCCCGCGCTGCTGGTTT
AAATCCCTCCGTGGTCTAACCAGCGCGCGGGCTGCTGCTGCTGCGTCCGG
CGGTGGACAGCAGGGCAGCGCTATGTTGCAGCCAATGCTAGTCCCGACTC
CCATGGAGCGCAGCTAGAAGTTCGATCAGCTTTGGTGCACTCATGCAGTC
TCCCTGTCACGAGGTTCAAATTTCCCTGCGTGGTCTAACCCGGACATCGG
AACACTACGTGCACACACAAGAAGCGTAGATAGGGCCAAGGTAGTTTTCT
CATCCCGATTCAGCATCGGATGGCTCCTGTAGGGCGACATCTTTGGCATC
CAACACAAGTCTCTTGCCCGAACGGTTTAAATTTCCCTCCGTGGTCTAAC
CCGAGGGTGAGAGACGCGGCAGCCTCGTGTGGCCACACCCCTACCGCGCG
GTGAAAATGGGGAGATGATAGGTGTGTGCACATGTATCTTTGCTCCTTGA
CTATGATCACCCCAACAAACGCTCGCTGCTGTGTAGACTAAACTGAGTCT
ATGCTTTCTATATGCATGCATGTGCATGTCGTGTACTGCTGTAGACGGCT
GTTACGCAGGTGTCCATGTCTCCATCCTTTTTTTGAGAACTCTACATGTA
AATTACTGCTGCCACGGTCTGTTTTTGGGGCCAAGCGGCCAGAGATTCCC
CACGCTTGTGTAGGCGGATGGCAGTAGCTGCTGCTGTGGACAGGGCGTCG
GCAAGCACAACACAACCCGTTATATCGTACAAGCACAGCACACATTTTGA
TTTGCAGGTCTTCTAACGCTGTCTTACCACATGAGAGCAGGGAGCCTCTC
TGGAACTGGTAGCTTGCACTCACGGCAGATGGCTTTTGAAGAAGGCGATT
ATCCTCGCAAAGATGCAAGCTACAGTTTCTCGTAGCATAGGTTCTCTCGC
GAAACTGGTAATGCCTAGAAGTTCGTACGTAAACACCATTAAGACTGCCC
AACCATCTTGATTTTCGCCGTACATAAAAGTATGATTTTCTCATGGCTTT
GCTTGCCGTCGATTTTTTGCCATCAACTCGTTTCTCGTTGTCGGGGTGAA
AACGAACAACACAGGCGGCTGCCGCCAAGAAGACCGAGATCTTCGAGCGT
GCCGAGCGCTACGTCAAGGAGTACCGCGCCCAGGAGAACGACTCGATCCG
CTTCCGCCGCGAGGCCAAGGCGGCGGGTAACATCCACGTCCCGGCTGAGG
TGTGTGCACACACTTGCTGCGTTCATTCGGGCAGTCTTATTCGGTTGATG
AGCTTAACAGCAGTCTTGGCAGCACTCTCTGTGCGGTACGATAGGGGTTA
TACCCTGGTTCTCGAGGTGGCGGTTGGTGTGCATGGTGCACTCCACGCCC
CGGCCGTCTCAGTCGAGGTCCAGGCGACCTCGCTATTTCACCCGTGTCGT
ATCGTACTCTGCATTCGGTTGTGACTATTTGGCTCCAAGCCATGGGCGAT
TAATTCTTTCGTCTGGTTTCTTGACTTGCCAGAAAAATACCTCGAAAAGC
ATATCCAGCTTCACACCTCAGATGTGGGCATCTTGTGAAAGCTGTCAGAC
TACGCTCATGTAGCTGCATTCTCGCGTGCGACACCTGATCAGTCAGCTCT
CGGCGTCATTCAATTTTTTTTTCTCCCATCATTGGACTCTATGTTGGGCA
TCAATTGATGATTTACTCGCATGTGTTTCTTGCTCTCTCCAGGCGACATT
AATTCCTTGTTCTGGAAGTAGATCACGCAACTAACCTTTCGTGCATGACA
TGCCGTCTTCTCCTTTCATCTCCTCGAACCCCGCCTTCCTGCTCACTTAT
TTTGCCGGTCCTTTTTTTCAGGCCGGTGTGGTGATTGTCGTCCGCATCCG
CGGTATCATCGGCGTGTCCCCCAAGGTGCGCAAGATCCTGCAGCTCCTCC
GCCTGCGCCAGATCAACAACTCGGTCTTCGTCAAGCTCAACGCCGCGACC
GTCAAGATGCTGCGCCTCGTGGAGCCCTACGTGGCGTACGGGTACCCCAA
CCTGAAGACGGTGCGCGAGCTCATCTACAAGCGCGGGTTCGGAAAGGTGT
GTGAAAGAGGGGAACCTCAAGTGTTTTTTATAGTATTTACAGTCACAGCA
AGGCTAAAATAATACCCCCTTTCAAGAGAATACTACAGCAGTCGAGGCAT
CAAGCGTACGACGTGTATTACCGTTGCTGCGAGTGCCGTTTCCTAGTGAT
GAATTCGATCTGGTTCGTTCTACTCGTAGTATGGATTCAAGGCGCCCATC
GATTGAAGTATGATGATGCATACGCTGGCCACCTCATGCTCAGGAGTTTC
CCCTGATTTCTTTGCCGCAGGTGAACAAGCAGCGCATCCCCATCTCGGAC
AACTCCGTGATCGAGGGCACCCTCGGCAAGGCCGGCATCATCTGCGTGGA
GGACCTGATCCACGAGATATACACCGTGGGCCCCAACTTCAAGGCGGCCA
ACAACTTCCTGTGGCCCTTCAAGCTCTCCAACCCTAACGGCGGCTTCCGC
CAGAAGCTCCTCCACTTCAACGAGGGCGGGGACGCGGGGCAGCGCGGCGT
TAAGATCAACGCCCTCATCAAGCGCATGCTCTAATTTTTGGAAATGGTCG
TGGTTTTGCTGCTGCTGTCGCGATTGCAAGCGTGGCCGCTACCGTGCTTT
TGGGGTCTTGTTGGCGGTTCTTATTACCCGCGGTAGCTTGGTGTTGCAGC
ACGAGCTTGGTGGAAGAGTGCAGGGAACCGGGGGGATTCCAAGGGGGCGG
TGTTGTCGTCGTTTGACGTTGGTAGAAGCCCCGGCTTTCGTTGTGCTCCT
TTCTGTTGGCGCATTTGCTTTGGCATTTGGTTGCAAACCCAGCACACCGT
TTGTGTGACGCATGAACGAAGAACAAAAAGAGATAAAAATTAACACACGG
CTGCGTGCGCGCGTGGCGCGGGCATGGCAGTGAGA
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Coding sequence (CDS) from alignment at Scaffold_189:247175..250459+

>EsuBft663_18a-0001 ID=EsuBft663_18a-0001|Name=EsuBft663_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=744bp|location=Sequence derived from alignment at Scaffold_189:247175..250459+ (Ectocarpus subulatus male Bft15b)
ATGCCGGCCGCTGTCAGCAAGGAGAGCAAGCCCATCATCCCTGAGTCGGT
GCTCAAGAAGCGCCGCACGAAGGAGGCCATCGCCGCCAAGCAGGCCGCCA
AGCAGGAGGCCGACCAGAAGGCGGCTGCCGCCAAGAAGACCGAGATCTTC
GAGCGTGCCGAGCGCTACGTCAAGGAGTACCGCGCCCAGGAGAACGACTC
GATCCGCTTCCGCCGCGAGGCCAAGGCGGCGGGTAACATCCACGTCCCGG
CTGAGGCCGGTGTGGTGATTGTCGTCCGCATCCGCGGTATCATCGGCGTG
TCCCCCAAGGTGCGCAAGATCCTGCAGCTCCTCCGCCTGCGCCAGATCAA
CAACTCGGTCTTCGTCAAGCTCAACGCCGCGACCGTCAAGATGCTGCGCC
TCGTGGAGCCCTACGTGGCGTACGGGTACCCCAACCTGAAGACGGTGCGC
GAGCTCATCTACAAGCGCGGGTTCGGAAAGGTGAACAAGCAGCGCATCCC
CATCTCGGACAACTCCGTGATCGAGGGCACCCTCGGCAAGGCCGGCATCA
TCTGCGTGGAGGACCTGATCCACGAGATATACACCGTGGGCCCCAACTTC
AAGGCGGCCAACAACTTCCTGTGGCCCTTCAAGCTCTCCAACCCTAACGG
CGGCTTCCGCCAGAAGCTCCTCCACTTCAACGAGGGCGGGGACGCGGGGC
AGCGCGGCGTTAAGATCAACGCCCTCATCAAGCGCATGCTCTAA
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