EsuBft5024_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft5024_2a-0001
Unique NameEsuBft5024_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_647contigScaffold_647:157774..159163 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft5024_2
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE
Protein domainsSignalP-TM
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length131
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft5024_2aEsuBft5024_2aEctocarpus subulatus male Bft15bgeneScaffold_647 157774..159163 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft5024_2a-0001-exonEsuBft5024_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_647 157774..158330 -
EsuBft5024_2a-0001-exonagat-exon-68513Ectocarpus subulatus male Bft15bexonScaffold_647 158404..159163 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft5024_2a-0001-exonagat-three_prime_utr-17291Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_647 157774..157883 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft5024_2a-0001-cdsEsuBft5024_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_647 157884..158330 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft5024_2a-0001-exonagat-five_prime_utr-10990Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_647 159157..159163 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft5024_2a-0001EsuBft5024_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_647 157884..159156 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft5024_2a-0001 ID=EsuBft5024_2a-0001|Name=EsuBft5024_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1317bp|location=Sequence derived from alignment at Scaffold_647:157774..159163- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTTGGCAATGGGTATGCAGACGGCCGCAGCGGCGGCGGTGACGACAGCAT
CGGCAGGACCGACGGCGGCGCGGACGGGTTCGGCCAGAGCGCCGTCACCG
ACAGCAGCATCGGCGGGAGCGGAGGCGGTACGGACGGCTTCGGCCAGAGC
GCCGTCCCCGGCAGCAACATCGGCGGTGACGGCATCGGTGACGGGGGGAA
CGGCAGCAGCAGTAGCAGCAGCGGCGTCCCCGGTCGCCGCTTTGGCGTTG
GGTATCCAGACGGCCGCAACGGCGGCGGTAGCGACATCGGTGACGGGGGG
AACGGCAACGGCGGCAGCAGCAGCGGCGTCCCCGGTCGCCGCGTTGGCGT
CGGGTGTCCAGACGACCGCAGGGTCGGTGGCGGCGGCACCGGTGACGGAG
GTATGTAACGAAGAGTTGAAAGAAGCGGTTGGTGCGACAACCATGCCGTT
GCCAGTCCTCGAGGAACTTGATAGCCAATGTGCCGGGGGGCACGTGAGCA
ACAGCAGCATCAGCAGCAGCAGTAGCAGCAGCTGCAGCAGCGGGGACAGC
GGCGGCGATGGGAGCGGGGACGAGGGGTTGGATGAAATATGGAGTGGAGC
CCCGACGCACCCTTTCGACCCTGGGAAGGCTGAGGGGGATGTGAGCATCA
GCAGCGGCAGCAGCAGTAGCGGCAGCAGCGAGGAAGCGGTGGTGATGGGA
GCGGGGATGAGGGATTGGATGAAACCTGGATTGGAGTCCAGACGCACCCC
TTCGACCCCGGAACGGGAGTGGCAGCTCCGGCGGCGGCAACGGCGACAAC
GGCAGCAGCCGCAGCAGCGACGGAAGTGGCGGCTTCGGCCAGAGCTCCGG
CGGCGACACCGGCGGCGGCAGGAGCAGCGACAGGAGTGGTTGCTTCGGCC
AGAGCTCCGACGGCAGCAGAAGACGGCAGCGGCGGCTTTGGCCAGAGCCC
CGTCGGCGGCAGCGGCGACAACGGCGGCGGTGGTAGAGGCGGCAGTAGCG
ACGTCACCGGCAGCCGTGTTGACGCTGGAACTCATGATGGTCGTGGCGGC
GGGGAACGGCAACGGCGGCGATGGCAGCGGCGGCAGCAGTGGTGACGCCC
TCGAGTCGACCGGGAACGGGGAGGACACGGTGACAGCGACGACCTCACCT
TGTTACAGCCAAGTGAGAGAGCATGTGAATCGTTTTCGACTTTGTTCGGT
TTTGTGAGCAGGCATGTACGTTTCCGCTTCGCCATTTGGCTTCGTATTTA
TTTTTTTGTTCTGTTTTTCCCTTGCTAGCGCACTGTGCACTTTGATGCAG
AAAACACGTGTATGCCA
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protein sequence of EsuBft5024_2a-0001

>EsuBft5024_2 ID=EsuBft5024_2|Name=EsuBft5024_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=399bp
MGMQTAAAAAVTTASAGPTAARTGSARAPSPTAASAGAEAVRTASARAPS
PAATSAVTASVTGGTAAAVAAAASPVAALALGIQTAATAAVATSVTGGTA
TAAAAAASPVAALASGVQTTAGSVAAAPVTEVCNEELKEAVGATTMPLPV
LEELDSQCAGGHVSNSSISSSSSSSCSSGDSGGDGSGDEGLDEIWSGAPT
HPFDPGKAEGDVSISSGSSSSGSSEEAVVMGAGMRDWMKPGLESRRTPST
PEREWQLRRRQRRQRQQPQQRRKWRLRPELRRRHRRRQEQRQEWLLRPEL
RRQQKTAAAALARAPSAAAATTAAVVEAAVATSPAAVLTLELMMVVAAGN
GNGGDGSGGSSGDALESTGNGEDTVTATTSPCYSQVREHVNRFRLCSVL
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mRNA from alignment at Scaffold_647:157774..159163-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft5024_2a-0001 ID=EsuBft5024_2a-0001|Name=EsuBft5024_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1390bp|location=Sequence derived from alignment at Scaffold_647:157774..159163- (Ectocarpus subulatus male Bft15b)
GTTGGCAATGGGTATGCAGACGGCCGCAGCGGCGGCGGTGACGACAGCAT
CGGCAGGACCGACGGCGGCGCGGACGGGTTCGGCCAGAGCGCCGTCACCG
ACAGCAGCATCGGCGGGAGCGGAGGCGGTACGGACGGCTTCGGCCAGAGC
GCCGTCCCCGGCAGCAACATCGGCGGTGACGGCATCGGTGACGGGGGGAA
CGGCAGCAGCAGTAGCAGCAGCGGCGTCCCCGGTCGCCGCTTTGGCGTTG
GGTATCCAGACGGCCGCAACGGCGGCGGTAGCGACATCGGTGACGGGGGG
AACGGCAACGGCGGCAGCAGCAGCGGCGTCCCCGGTCGCCGCGTTGGCGT
CGGGTGTCCAGACGACCGCAGGGTCGGTGGCGGCGGCACCGGTGACGGAG
GTATGTAACGAAGAGTTGAAAGAAGCGGTTGGTGCGACAACCATGCCGTT
GCCAGTCCTCGAGGAACTTGATAGCCAATGTGCCGGGGGGCACGTGAGCA
ACAGCAGCATCAGCAGCAGCAGTAGCAGCAGCTGCAGCAGCGGGGACAGC
GGCGGCGATGGGAGCGGGGACGAGGGGTTGGATGAAATATGGAGTGGAGC
CCCGACGCACCCTTTCGACCCTGGGAAGGCTGAGGGGGATGTGAGCATCA
GCAGCGGCAGCAGCAGTAGCGGCAGCAGCGAGGAAGCGGTGGTGATGGGA
GCGGGGATGAGGGATTGGATGAAACCTGGATTGGAGTCCAGACGCACCCC
TTCGACCCCGGTACGACATCTTCACGTGGCGTGAGGAGACGGGGGGCGGT
ACCAGGGGTGGTGTACCCCTTCGATAGGGGCAGGAACGGGAGTGGCAGCT
CCGGCGGCGGCAACGGCGACAACGGCAGCAGCCGCAGCAGCGACGGAAGT
GGCGGCTTCGGCCAGAGCTCCGGCGGCGACACCGGCGGCGGCAGGAGCAG
CGACAGGAGTGGTTGCTTCGGCCAGAGCTCCGACGGCAGCAGAAGACGGC
AGCGGCGGCTTTGGCCAGAGCCCCGTCGGCGGCAGCGGCGACAACGGCGG
CGGTGGTAGAGGCGGCAGTAGCGACGTCACCGGCAGCCGTGTTGACGCTG
GAACTCATGATGGTCGTGGCGGCGGGGAACGGCAACGGCGGCGATGGCAG
CGGCGGCAGCAGTGGTGACGCCCTCGAGTCGACCGGGAACGGGGAGGACA
CGGTGACAGCGACGACCTCACCTTGTTACAGCCAAGTGAGAGAGCATGTG
AATCGTTTTCGACTTTGTTCGGTTTTGTGAGCAGGCATGTACGTTTCCGC
TTCGCCATTTGGCTTCGTATTTATTTTTTTGTTCTGTTTTTCCCTTGCTA
GCGCACTGTGCACTTTGATGCAGAAAACACGTGTATGCCA
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Coding sequence (CDS) from alignment at Scaffold_647:157774..159163-

>EsuBft5024_2a-0001 ID=EsuBft5024_2a-0001|Name=EsuBft5024_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1200bp|location=Sequence derived from alignment at Scaffold_647:157774..159163- (Ectocarpus subulatus male Bft15b)
ATGGGTATGCAGACGGCCGCAGCGGCGGCGGTGACGACAGCATCGGCAGG
ACCGACGGCGGCGCGGACGGGTTCGGCCAGAGCGCCGTCACCGACAGCAG
CATCGGCGGGAGCGGAGGCGGTACGGACGGCTTCGGCCAGAGCGCCGTCC
CCGGCAGCAACATCGGCGGTGACGGCATCGGTGACGGGGGGAACGGCAGC
AGCAGTAGCAGCAGCGGCGTCCCCGGTCGCCGCTTTGGCGTTGGGTATCC
AGACGGCCGCAACGGCGGCGGTAGCGACATCGGTGACGGGGGGAACGGCA
ACGGCGGCAGCAGCAGCGGCGTCCCCGGTCGCCGCGTTGGCGTCGGGTGT
CCAGACGACCGCAGGGTCGGTGGCGGCGGCACCGGTGACGGAGGTATGTA
ACGAAGAGTTGAAAGAAGCGGTTGGTGCGACAACCATGCCGTTGCCAGTC
CTCGAGGAACTTGATAGCCAATGTGCCGGGGGGCACGTGAGCAACAGCAG
CATCAGCAGCAGCAGTAGCAGCAGCTGCAGCAGCGGGGACAGCGGCGGCG
ATGGGAGCGGGGACGAGGGGTTGGATGAAATATGGAGTGGAGCCCCGACG
CACCCTTTCGACCCTGGGAAGGCTGAGGGGGATGTGAGCATCAGCAGCGG
CAGCAGCAGTAGCGGCAGCAGCGAGGAAGCGGTGGTGATGGGAGCGGGGA
TGAGGGATTGGATGAAACCTGGATTGGAGTCCAGACGCACCCCTTCGACC
CCGGAACGGGAGTGGCAGCTCCGGCGGCGGCAACGGCGACAACGGCAGCA
GCCGCAGCAGCGACGGAAGTGGCGGCTTCGGCCAGAGCTCCGGCGGCGAC
ACCGGCGGCGGCAGGAGCAGCGACAGGAGTGGTTGCTTCGGCCAGAGCTC
CGACGGCAGCAGAAGACGGCAGCGGCGGCTTTGGCCAGAGCCCCGTCGGC
GGCAGCGGCGACAACGGCGGCGGTGGTAGAGGCGGCAGTAGCGACGTCAC
CGGCAGCCGTGTTGACGCTGGAACTCATGATGGTCGTGGCGGCGGGGAAC
GGCAACGGCGGCGATGGCAGCGGCGGCAGCAGTGGTGACGCCCTCGAGTC
GACCGGGAACGGGGAGGACACGGTGACAGCGACGACCTCACCTTGTTACA
GCCAAGTGAGAGAGCATGTGAATCGTTTTCGACTTTGTTCGGTTTTGTGA
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