Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft5024_2 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SignalP-TM |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Length | 131 |
| Hectar predicted targeting category | other localisation |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft5024_2a-0001 ID=EsuBft5024_2a-0001|Name=EsuBft5024_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1317bp|location=Sequence derived from alignment at Scaffold_647:157774..159163- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GTTGGCAATGGGTATGCAGACGGCCGCAGCGGCGGCGGTGACGACAGCAT
CGGCAGGACCGACGGCGGCGCGGACGGGTTCGGCCAGAGCGCCGTCACCG
ACAGCAGCATCGGCGGGAGCGGAGGCGGTACGGACGGCTTCGGCCAGAGC
GCCGTCCCCGGCAGCAACATCGGCGGTGACGGCATCGGTGACGGGGGGAA
CGGCAGCAGCAGTAGCAGCAGCGGCGTCCCCGGTCGCCGCTTTGGCGTTG
GGTATCCAGACGGCCGCAACGGCGGCGGTAGCGACATCGGTGACGGGGGG
AACGGCAACGGCGGCAGCAGCAGCGGCGTCCCCGGTCGCCGCGTTGGCGT
CGGGTGTCCAGACGACCGCAGGGTCGGTGGCGGCGGCACCGGTGACGGAG
GTATGTAACGAAGAGTTGAAAGAAGCGGTTGGTGCGACAACCATGCCGTT
GCCAGTCCTCGAGGAACTTGATAGCCAATGTGCCGGGGGGCACGTGAGCA
ACAGCAGCATCAGCAGCAGCAGTAGCAGCAGCTGCAGCAGCGGGGACAGC
GGCGGCGATGGGAGCGGGGACGAGGGGTTGGATGAAATATGGAGTGGAGC
CCCGACGCACCCTTTCGACCCTGGGAAGGCTGAGGGGGATGTGAGCATCA
GCAGCGGCAGCAGCAGTAGCGGCAGCAGCGAGGAAGCGGTGGTGATGGGA
GCGGGGATGAGGGATTGGATGAAACCTGGATTGGAGTCCAGACGCACCCC
TTCGACCCCGGAACGGGAGTGGCAGCTCCGGCGGCGGCAACGGCGACAAC
GGCAGCAGCCGCAGCAGCGACGGAAGTGGCGGCTTCGGCCAGAGCTCCGG
CGGCGACACCGGCGGCGGCAGGAGCAGCGACAGGAGTGGTTGCTTCGGCC
AGAGCTCCGACGGCAGCAGAAGACGGCAGCGGCGGCTTTGGCCAGAGCCC
CGTCGGCGGCAGCGGCGACAACGGCGGCGGTGGTAGAGGCGGCAGTAGCG
ACGTCACCGGCAGCCGTGTTGACGCTGGAACTCATGATGGTCGTGGCGGC
GGGGAACGGCAACGGCGGCGATGGCAGCGGCGGCAGCAGTGGTGACGCCC
TCGAGTCGACCGGGAACGGGGAGGACACGGTGACAGCGACGACCTCACCT
TGTTACAGCCAAGTGAGAGAGCATGTGAATCGTTTTCGACTTTGTTCGGT
TTTGTGAGCAGGCATGTACGTTTCCGCTTCGCCATTTGGCTTCGTATTTA
TTTTTTTGTTCTGTTTTTCCCTTGCTAGCGCACTGTGCACTTTGATGCAG
AAAACACGTGTATGCCA back to topprotein sequence of EsuBft5024_2a-0001 >EsuBft5024_2 ID=EsuBft5024_2|Name=EsuBft5024_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=399bp
MGMQTAAAAAVTTASAGPTAARTGSARAPSPTAASAGAEAVRTASARAPS
PAATSAVTASVTGGTAAAVAAAASPVAALALGIQTAATAAVATSVTGGTA
TAAAAAASPVAALASGVQTTAGSVAAAPVTEVCNEELKEAVGATTMPLPV
LEELDSQCAGGHVSNSSISSSSSSSCSSGDSGGDGSGDEGLDEIWSGAPT
HPFDPGKAEGDVSISSGSSSSGSSEEAVVMGAGMRDWMKPGLESRRTPST
PEREWQLRRRQRRQRQQPQQRRKWRLRPELRRRHRRRQEQRQEWLLRPEL
RRQQKTAAAALARAPSAAAATTAAVVEAAVATSPAAVLTLELMMVVAAGN
GNGGDGSGGSSGDALESTGNGEDTVTATTSPCYSQVREHVNRFRLCSVL back to topmRNA from alignment at Scaffold_647:157774..159163- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft5024_2a-0001 ID=EsuBft5024_2a-0001|Name=EsuBft5024_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1390bp|location=Sequence derived from alignment at Scaffold_647:157774..159163- (Ectocarpus subulatus male Bft15b)
GTTGGCAATGGGTATGCAGACGGCCGCAGCGGCGGCGGTGACGACAGCAT
CGGCAGGACCGACGGCGGCGCGGACGGGTTCGGCCAGAGCGCCGTCACCG
ACAGCAGCATCGGCGGGAGCGGAGGCGGTACGGACGGCTTCGGCCAGAGC
GCCGTCCCCGGCAGCAACATCGGCGGTGACGGCATCGGTGACGGGGGGAA
CGGCAGCAGCAGTAGCAGCAGCGGCGTCCCCGGTCGCCGCTTTGGCGTTG
GGTATCCAGACGGCCGCAACGGCGGCGGTAGCGACATCGGTGACGGGGGG
AACGGCAACGGCGGCAGCAGCAGCGGCGTCCCCGGTCGCCGCGTTGGCGT
CGGGTGTCCAGACGACCGCAGGGTCGGTGGCGGCGGCACCGGTGACGGAG
GTATGTAACGAAGAGTTGAAAGAAGCGGTTGGTGCGACAACCATGCCGTT
GCCAGTCCTCGAGGAACTTGATAGCCAATGTGCCGGGGGGCACGTGAGCA
ACAGCAGCATCAGCAGCAGCAGTAGCAGCAGCTGCAGCAGCGGGGACAGC
GGCGGCGATGGGAGCGGGGACGAGGGGTTGGATGAAATATGGAGTGGAGC
CCCGACGCACCCTTTCGACCCTGGGAAGGCTGAGGGGGATGTGAGCATCA
GCAGCGGCAGCAGCAGTAGCGGCAGCAGCGAGGAAGCGGTGGTGATGGGA
GCGGGGATGAGGGATTGGATGAAACCTGGATTGGAGTCCAGACGCACCCC
TTCGACCCCGGTACGACATCTTCACGTGGCGTGAGGAGACGGGGGGCGGT
ACCAGGGGTGGTGTACCCCTTCGATAGGGGCAGGAACGGGAGTGGCAGCT
CCGGCGGCGGCAACGGCGACAACGGCAGCAGCCGCAGCAGCGACGGAAGT
GGCGGCTTCGGCCAGAGCTCCGGCGGCGACACCGGCGGCGGCAGGAGCAG
CGACAGGAGTGGTTGCTTCGGCCAGAGCTCCGACGGCAGCAGAAGACGGC
AGCGGCGGCTTTGGCCAGAGCCCCGTCGGCGGCAGCGGCGACAACGGCGG
CGGTGGTAGAGGCGGCAGTAGCGACGTCACCGGCAGCCGTGTTGACGCTG
GAACTCATGATGGTCGTGGCGGCGGGGAACGGCAACGGCGGCGATGGCAG
CGGCGGCAGCAGTGGTGACGCCCTCGAGTCGACCGGGAACGGGGAGGACA
CGGTGACAGCGACGACCTCACCTTGTTACAGCCAAGTGAGAGAGCATGTG
AATCGTTTTCGACTTTGTTCGGTTTTGTGAGCAGGCATGTACGTTTCCGC
TTCGCCATTTGGCTTCGTATTTATTTTTTTGTTCTGTTTTTCCCTTGCTA
GCGCACTGTGCACTTTGATGCAGAAAACACGTGTATGCCA back to topCoding sequence (CDS) from alignment at Scaffold_647:157774..159163- >EsuBft5024_2a-0001 ID=EsuBft5024_2a-0001|Name=EsuBft5024_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1200bp|location=Sequence derived from alignment at Scaffold_647:157774..159163- (Ectocarpus subulatus male Bft15b)
ATGGGTATGCAGACGGCCGCAGCGGCGGCGGTGACGACAGCATCGGCAGG
ACCGACGGCGGCGCGGACGGGTTCGGCCAGAGCGCCGTCACCGACAGCAG
CATCGGCGGGAGCGGAGGCGGTACGGACGGCTTCGGCCAGAGCGCCGTCC
CCGGCAGCAACATCGGCGGTGACGGCATCGGTGACGGGGGGAACGGCAGC
AGCAGTAGCAGCAGCGGCGTCCCCGGTCGCCGCTTTGGCGTTGGGTATCC
AGACGGCCGCAACGGCGGCGGTAGCGACATCGGTGACGGGGGGAACGGCA
ACGGCGGCAGCAGCAGCGGCGTCCCCGGTCGCCGCGTTGGCGTCGGGTGT
CCAGACGACCGCAGGGTCGGTGGCGGCGGCACCGGTGACGGAGGTATGTA
ACGAAGAGTTGAAAGAAGCGGTTGGTGCGACAACCATGCCGTTGCCAGTC
CTCGAGGAACTTGATAGCCAATGTGCCGGGGGGCACGTGAGCAACAGCAG
CATCAGCAGCAGCAGTAGCAGCAGCTGCAGCAGCGGGGACAGCGGCGGCG
ATGGGAGCGGGGACGAGGGGTTGGATGAAATATGGAGTGGAGCCCCGACG
CACCCTTTCGACCCTGGGAAGGCTGAGGGGGATGTGAGCATCAGCAGCGG
CAGCAGCAGTAGCGGCAGCAGCGAGGAAGCGGTGGTGATGGGAGCGGGGA
TGAGGGATTGGATGAAACCTGGATTGGAGTCCAGACGCACCCCTTCGACC
CCGGAACGGGAGTGGCAGCTCCGGCGGCGGCAACGGCGACAACGGCAGCA
GCCGCAGCAGCGACGGAAGTGGCGGCTTCGGCCAGAGCTCCGGCGGCGAC
ACCGGCGGCGGCAGGAGCAGCGACAGGAGTGGTTGCTTCGGCCAGAGCTC
CGACGGCAGCAGAAGACGGCAGCGGCGGCTTTGGCCAGAGCCCCGTCGGC
GGCAGCGGCGACAACGGCGGCGGTGGTAGAGGCGGCAGTAGCGACGTCAC
CGGCAGCCGTGTTGACGCTGGAACTCATGATGGTCGTGGCGGCGGGGAAC
GGCAACGGCGGCGATGGCAGCGGCGGCAGCAGTGGTGACGCCCTCGAGTC
GACCGGGAACGGGGAGGACACGGTGACAGCGACGACCTCACCTTGTTACA
GCCAAGTGAGAGAGCATGTGAATCGTTTTCGACTTTGTTCGGTTTTGTGA back to top
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