EsuBft468_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft468_3a	EsuBft468_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_189 351229..355526 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft468_3a-0001	EsuBft468_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_189 351229..355487 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft468_3a-0001-exon	agat-exon-28068	Ectocarpus subulatus male Bft15b	exon	Scaffold_189 351229..351377 +
EsuBft468_3a-0001-exon	agat-exon-28069	Ectocarpus subulatus male Bft15b	exon	Scaffold_189 351807..351861 +
EsuBft468_3a-0001-exon	agat-exon-28074	Ectocarpus subulatus male Bft15b	exon	Scaffold_189 352408..352937 +
EsuBft468_3a-0001-exon	EsuBft468_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_189 353159..353162 +
EsuBft468_3a-0001-exon	agat-exon-28070	Ectocarpus subulatus male Bft15b	exon	Scaffold_189 353648..353710 +
EsuBft468_3a-0001-exon	agat-exon-28073	Ectocarpus subulatus male Bft15b	exon	Scaffold_189 353935..354044 +
EsuBft468_3a-0001-exon	agat-exon-28071	Ectocarpus subulatus male Bft15b	exon	Scaffold_189 354598..354742 +
EsuBft468_3a-0001-exon	agat-exon-28072	Ectocarpus subulatus male Bft15b	exon	Scaffold_189 354856..354960 +
EsuBft468_3a-0001-exon	agat-exon-28067	Ectocarpus subulatus male Bft15b	exon	Scaffold_189 355245..355526 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft468_3a-0001-cds	EsuBft468_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_189 351229..351377 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft468_3a-0001-exon	agat-three_prime_utr-16577	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_189 355488..355526 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_189:351229..355526+
coding sequence from alignment at Scaffold_189:351229..355526+

spliced messenger RNA

>EsuBft468_3a-0001 ID=EsuBft468_3a-0001|Name=EsuBft468_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1443bp|location=Sequence derived from alignment at Scaffold_189:351229..355526+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGCCACCCAAGACATCGACATTGAGCTTCTTCGATCCCTCGTGGA
GGTAGCCATGATGAAGGGCTTCCGCGGCGGGAAGCTCGAGGAGGCTATCG
CGGCGGTGGCGCAGTACGACCGCCAGCAGGCTGTCGTTGCGATGATGAGG
AGCCTTCCCGAACGGCTGATGTCCAAGGCGGCCGAGGTTGCTCGCGACGT
CAGGAGGCGCTCCGACATCCAGCTCAGCCAGATCGCTGGGCTGGAGGAGG
AGGTGCTTCTGCTGGCCTCGACCGTAAAGGGGCTGCAGCACTCGGCCGCG
ATCGACGCCGCCCGCTTGGCGTCGGAGAGGACGGCTGCCAAGGCCGCCAG
CGACGACGCTGCTGCGCTCGCTCAAACCCTCCGAGCCGACGTCAAGAGGC
TGCAAGACACGGTCGTCAACCTAGAGACCGTTGCCGCTACTGACGCGGCG
AAGTTCCTCACGACGGAGGTCGACCTTCGCGCCGAGCTCGTCGCCGCTGA
CGGCACGATCGACTCCCTCAAGTCCACCGTGCGACAACAGCGCCAAGACC
TTGCGTCGTGCCAGCACGACATGGCAGAAGTGGACGAGGCGTCGTTCACC
CTCTCCCTCTTGGCGGGAGAGAGCACGCACCTCCTCAGAGGGGGTCTCCA
GCCGGCTACCCCCAGGCCTGCGGAGGCCACCACGTGGGCAGCGGCCGGCC
TGTCGGCAGCTCACGAGGCGCGTCAACGCACGTGCGGGCATGAGGAAGAA
GAGCGGCAGCGTCAGGCCCTCGAAGAGGAGATGGTGGACCTCCAGAACGA
AGTGGACGAGGCGGAGACGGCTGCCGATTCGTGTGCGGCCAGCCTGGAGA
AACTCGACGAGCAGACTGTTGCCGTTCTGACCGCGGTCGAGAAGACCGTT
GGCGCTCAGAGCACTCGCTTGGGGGAGATCGGAGACGTGGCGCTGTCCTT
CACCAGGCAGCTGCTGGACGACCTCTCCGGCTGCCGGCAACAGGTCGTAG
AAGTGGAGGAGAGGGCGATGGACCGCCTGGAGGAGACGATGGCCTCTGAG
GAAGAGTCTACATACATGCACAGCAGCGCTTCATGTGTTCAAGCATGCCT
TGAGCGGTCGCAACATCATCGCCGGGAGAGATCCAGCGGTGAGTTTGTAC
ACAGAAGGGGGGCTCGCGAGACCCAAGCGGCGTTTCGGGCGTGCGCAGCG
GGGCTCGAGCGACTGGATTCCCAGTCGCTAGACCTCGCCCGCTTCTTGGC
CGACAAGGCCATGCAAGCGGGAGCACCGGTGTCCATTGCGAATGCAGTGG
AGGCACCCAAGCCGCCGGGGTACGGCTTGCTGGACTCCTTATTCCGCCCA
CGGGGTGTCAGCGATGATGCCATGGTGAAGATAGTCCCGTCGCGAGTCGG
GTAAGCATTCTTATGCGTTGTTGGATGCAAGGGGAGAGTGCAT

protein sequence of EsuBft468_3a-0001

>EsuBft468_3 ID=EsuBft468_3|Name=EsuBft468_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=467bp
MKATQDIDIELLRSLVEVAMMKGFRGGKLEEAIAAVAQYDRQQAVVAMMR
SLPERLMSKAAEVARDVRRRSDIQLSQIAGLEEEVLLLASTVKGLQHSAA
IDAARLASERTAAKAASDDAAALAQTLRADVKRLQDTVVNLETVAATDAA
KFLTTEVDLRAELVAADGTIDSLKSTVRQQRQDLASCQHDMAEVDEASFT
LSLLAGESTHLLRGGLQPATPRPAEATTWAAAGLSAAHEARQRTCGHEEE
ERQRQALEEEMVDLQNEVDEAETAADSCAASLEKLDEQTVAVLTAVEKTV
GAQSTRLGEIGDVALSFTRQLLDDLSGCRQQVVEVEERAMDRLEETMASE
EESTYMHSSASCVQACLERSQHHRRERSSGEFVHRRGARETQAAFRACAA
GLERLDSQSLDLARFLADKAMQAGAPVSIANAVEAPKPPGYGLLDSLFRP
RGVSDDAMVKIVPSRVG

mRNA from alignment at Scaffold_189:351229..355526+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft468_3a-0001 ID=EsuBft468_3a-0001|Name=EsuBft468_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4298bp|location=Sequence derived from alignment at Scaffold_189:351229..355526+ (Ectocarpus subulatus male Bft15b)
ATGAAGGCCACCCAAGACATCGACATTGAGCTTCTTCGATCCCTCGTGGA
GGTAGCCATGATGAAGGGCTTCCGCGGCGGGAAGCTCGAGGAGGCTATCG
CGGCGGTGGCGCAGTACGACCGCCAGCAGGCTGTCGTTGCGATGATGAGG
TGAGAGGGCAGTGTCACGTTGTTGTTTTTTTGCCCTTTGTCCGTCTGGTC
ACTCCTCCGATCATCAAAGTCCACGATTGATCATCAAATCGTGCTGTTTT
CCAAGGTCCTCCCCCCCGCCAACGGAGTCAAGGTCGGGAGCAATAGCTAG
CTCGGTGGGAGTCATGTACCGTGAGTCTCTGTGCTCGGTGCCATGTGCAG
TAGATGTAGCATGCGTGACTGCTGCGGTGTTACCGCGGTGCACGTTCGTG
GTGCGCCGTTTGTCCATCATTTCCATCATGGCGGAGGTTACGTAGATCGA
GCTGTTTCGTACAACACGTGCGCGTTCCTACGTAGCCGCCGTGTCTGAAG
GACCCGCACTGTTTTTTCCAATCCGCCGTCTGGTACTTCCGCATCGATGC
CGTTTCCGTTCTTGGAATTTGTTTTCAGGAGCCTTCCCGAACGGCTGATG
TCCAAGGCGGCCGAGGTTGCTCGCGACGTCAGGGTAAGCCCTATCTCGTC
CATCCACTAGAGTGATGGATTGCTGAGTGCGGTATAGACGTCTCCGGCAG
TTCCCATGAGCTGCTATTTTTACAAAGGCAACACAAAAATAGCCTGAGAC
AACATTTCGCTTCGCGGTACACCCCATCGTGGTTATGTGTGTTACCATGT
CACCGCTCGCTGTAGTGTACACTCGGAGTAACGAACGTGGTACCGTGAAA
CCGTCGTGATGTGTACGTGTCCTTCCTTCAGTGGACGCCACCCCCCACCC
CCCCCCAATAGACGACAAACCGTGTTTCACAACAACCGTCGAGAAACCGC
AGGCTTTTTTTTTGCGCCAGGCAGTGTGTCGCTCCGTGGAATCACAGGAA
TATCCATCGCACACACGCTCGCATTCCGGCAGCGTTGTTGCCGCTCTTGT
TGCTGTTGCGGTTTCTTGGCGTAGTTGTTGTCGGTGTCTTTACAGTTGCT
CCGAAGTTTCTCCTCCACACTCACACGCCCCTTCTTCTTCCATTTCCACC
CGCCATGATACGTGGTAACGTGCCGCCAGAGGCGCTCCGACATCCAGCTC
AGCCAGATCGCTGGGCTGGAGGAGGAGGTGCTTCTGCTGGCCTCGACCGT
AAAGGGGCTGCAGCACTCGGCCGCGATCGACGCCGCCCGCTTGGCGTCGG
AGAGGACGGCTGCCAAGGCCGCCAGCGACGACGCTGCTGCGCTCGCTCAA
ACCCTCCGAGCCGACGTCAAGAGGCTGCAAGACACGGTCGTCAACCTAGA
GACCGTTGCCGCTACTGACGCGGCGAAGTTCCTCACGACGGAGGTCGACC
TTCGCGCCGAGCTCGTCGCCGCTGACGGCACGATCGACTCCCTCAAGTCC
ACCGTGCGACAACAGCGCCAAGACCTTGCGTCGTGCCAGCACGACATGGC
AGAAGTGGACGAGGCGTCGTTCACCCTCTCCCTCTTGGCGGGAGAGAGCA
CGCACCTCCTCAGAGGGGGTCTCCAGCCGGCTACCCCCAGGCCTGCGGAG
GCCACCACGTGGGCAGCGGCCGGCCTGTCGGCAGCTCACGAGGCGCGTCA
ACGCACGTGGTGAGCGAGCTCTTCAGCGTGCTAGCGCCCCCACGTAAATT
GTGGTAATTTGGCGCGGATCTACGCGGTGTCGGTGGTGCTTGTTGTTTGT
GGTTCGTTTGGTTGTTGATGATGAGGTTGGAATTGGCGCTTGGTTCCGAT
GATTTGTCGACCCCTCTCTCACCGTTGGTGTACAGTAGCAGGGAGTGTTT
GATGTCGATGGCTAAAGGTTGTTCGTGTAGCGGGGTACAGGATGAACTTG
AAATGTTGAACCGAGGGTGTGCTGGTATTTACGAATTCTTTCCCTATCGA
GGAACCATCAAGGCAATCTCGGCTTGCCGCAGGTGGACAGCAACATGTCC
ACTCGTCAACCTTTACACCACGTTGTGCGATTTGATGCGAAATATGAAAT
GGCTCTGCCTCTGTTGCGATTGAGTTGCGGCGGCTCTCACTCAAATCCTT
GACGGTGTCAACACTCCCGATCCTCCTGATTCGAATAACAGCCAAGCCGT
TCATGTTCAAGCCGGCCCGGTCGGTACTCCTATTGTCAAGGTACTCCTAT
TGCCATTCTTGTTTCAGGGCGTTGCTCCCCGCTGTATCTCACAATGCCCT
GACCCCGCAGTGACCGGGCATCAACAGCAGAGCGTGTGCCCATTCTCTCC
CTGCTTGTGGTGTGTTGCAGTGCTCGCCTGGATGGAGTCGCGACGACGAT
CTACTCCTTCTCGGCCAAGCATGAGGAAGAAGAGCGGCAGCGTCAGGCCC
TCGAAGAGGAGATGGTGGACCTCCAGAACGAAGTAAGTACCCCGTCTGAG
TTTTTTTTAGTGTTTTTGGACGCGTGCTGCTGTCTGCAGTGCAGTGATGT
GTAGTGTATGGCCTGAAAGACCGAGAACAACCATCGAAGGGAAGACAGCA
ACCCTCTTGACCCTCATCGCTCACCCGCTCTCCGCCCTCCCCACACCGCA
ATCTCGCCACTGCCTTTGTTTTGGCTCGAAATCTGGTCGCCGTTAACCGT
GCGCAGGTGGACGAGGCGGAGACGGCTGCCGATTCGTGTGCGGCCAGCCT
GGAGAAACTCGACGAGCAGACTGTTGCCGTTCTGACCGCGGTCGAGAAGA
CCGTTGGCGCTCAGAGGTGGGGCGGGGAAGGGAGCGTCTCCTCCGCGGCA
ACCTACGACAAGATCCGGTACGTCCTCGTCGTTGTTTCCGGTTGACCTCA
AGGGGGGGGGGCACGTGATGGGGCAATAGTGTCGGTTTGGCAGTGACTAC
CGTTGGTGTCGTTGTGCTTGGCGATGGTTGCTCGTGAAAGCGTTGTTGCT
GCTGTCACTAGCCAGTTGTTTCTGTAGTTTGTGCGGGCGGACCCGTGCAG
TCTCGACGACCTGTTTGGTAACATGGGAGCCATTTGGGGAGATATGTTCA
CCCAGGATTGAAGTCCTGATCGTTGTGGAGCGTCCCGCTCGCGCCGTGTG
TTGCTTGGTCCCGACAACTTTCGACAGTTGCTAGCCGCAATTTTCATGGT
CGGGCCTAGGTGTTTGCACGACCAAACGAACCCTGGACACCCCCTGCCGC
CCTCTGTCTTGAAATGAGGCGAGAGGCTAGAGGAGGGGCGACAGAAGCAA
GCAGTAGCCGTGGCCCTCCCCTTCACCCTCCGCTCCCTCGTCTCGGCTGC
TTCGATGCTCTTCATTTAGCACTCGCTTGGGGGAGATCGGAGACGTGGCG
CTGTCCTTCACCAGGCAGCTGCTGGACGACCTCTCCGGCTGCCGGCAACA
GGTCGTAGAAGTGGAGGAGAGGGCGATGGACCGCCTGGAGGAGACGATGG
CCTCTGAGGAAGAGGTATGCATCAGATGCACCTGCCTGAGCGTGACGCCA
AGGGTACTGTACCGTGTGTCACTCTATTGCTGGTATCAGGGTGATCAATC
ACGGGGCCCGACTATTCCGATCAATAGTCTACATACATGCACAGCAGCGC
TTCATGTGTTCAAGCATGCCTTGAGCGGTCGCAACATCATCGCCGGGAGA
GATCCAGCGGTGAGTTTGTACACAGAAGGGGGGTGGGGGAAAGTGATGCT
CGATGTCACCCTTTGGCATCGAACGAAATAGGCAGTGGATCATGGATCAT
GCGTTGGGAATGGGGGGAGGGGGGGGTACATACACGCTTGTCGAACCTGT
TGGTATTGGGGTGCATGGGCAGCCCACCGTCCGTGGATAGATAGCACAGC
CCGACCCCCGGAGAGCCAGTCATGAAGAGAGCGACTCTGTAACCCCCGTC
TACAAGCCGTCGGCCCCTACCGCTGTGTCTCGTTGGTTGTTTTTGTGCGA
CTCTCACTTGTAACAGGCTCGCGAGACCCAAGCGGCGTTTCGGGCGTGCG
CAGCGGGGCTCGAGCGACTGGATTCCCAGTCGCTAGACCTCGCCCGCTTC
TTGGCCGACAAGGCCATGCAAGCGGGAGCACCGGTGTCCATTGCGAATGC
AGTGGAGGCACCCAAGCCGCCGGGGTACGGCTTGCTGGACTCCTTATTCC
GCCCACGGGGTGTCAGCGATGATGCCATGGTGAAGATAGTCCCGTCGCGA
GTCGGGTAAGCATTCTTATGCGTTGTTGGATGCAAGGGGAGAGTGCAT

Coding sequence (CDS) from alignment at Scaffold_189:351229..355526+

>EsuBft468_3a-0001 ID=EsuBft468_3a-0001|Name=EsuBft468_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1404bp|location=Sequence derived from alignment at Scaffold_189:351229..355526+ (Ectocarpus subulatus male Bft15b)
ATGAAGGCCACCCAAGACATCGACATTGAGCTTCTTCGATCCCTCGTGGA
GGTAGCCATGATGAAGGGCTTCCGCGGCGGGAAGCTCGAGGAGGCTATCG
CGGCGGTGGCGCAGTACGACCGCCAGCAGGCTGTCGTTGCGATGATGAGG
AGCCTTCCCGAACGGCTGATGTCCAAGGCGGCCGAGGTTGCTCGCGACGT
CAGGAGGCGCTCCGACATCCAGCTCAGCCAGATCGCTGGGCTGGAGGAGG
AGGTGCTTCTGCTGGCCTCGACCGTAAAGGGGCTGCAGCACTCGGCCGCG
ATCGACGCCGCCCGCTTGGCGTCGGAGAGGACGGCTGCCAAGGCCGCCAG
CGACGACGCTGCTGCGCTCGCTCAAACCCTCCGAGCCGACGTCAAGAGGC
TGCAAGACACGGTCGTCAACCTAGAGACCGTTGCCGCTACTGACGCGGCG
AAGTTCCTCACGACGGAGGTCGACCTTCGCGCCGAGCTCGTCGCCGCTGA
CGGCACGATCGACTCCCTCAAGTCCACCGTGCGACAACAGCGCCAAGACC
TTGCGTCGTGCCAGCACGACATGGCAGAAGTGGACGAGGCGTCGTTCACC
CTCTCCCTCTTGGCGGGAGAGAGCACGCACCTCCTCAGAGGGGGTCTCCA
GCCGGCTACCCCCAGGCCTGCGGAGGCCACCACGTGGGCAGCGGCCGGCC
TGTCGGCAGCTCACGAGGCGCGTCAACGCACGTGCGGGCATGAGGAAGAA
GAGCGGCAGCGTCAGGCCCTCGAAGAGGAGATGGTGGACCTCCAGAACGA
AGTGGACGAGGCGGAGACGGCTGCCGATTCGTGTGCGGCCAGCCTGGAGA
AACTCGACGAGCAGACTGTTGCCGTTCTGACCGCGGTCGAGAAGACCGTT
GGCGCTCAGAGCACTCGCTTGGGGGAGATCGGAGACGTGGCGCTGTCCTT
CACCAGGCAGCTGCTGGACGACCTCTCCGGCTGCCGGCAACAGGTCGTAG
AAGTGGAGGAGAGGGCGATGGACCGCCTGGAGGAGACGATGGCCTCTGAG
GAAGAGTCTACATACATGCACAGCAGCGCTTCATGTGTTCAAGCATGCCT
TGAGCGGTCGCAACATCATCGCCGGGAGAGATCCAGCGGTGAGTTTGTAC
ACAGAAGGGGGGCTCGCGAGACCCAAGCGGCGTTTCGGGCGTGCGCAGCG
GGGCTCGAGCGACTGGATTCCCAGTCGCTAGACCTCGCCCGCTTCTTGGC
CGACAAGGCCATGCAAGCGGGAGCACCGGTGTCCATTGCGAATGCAGTGG
AGGCACCCAAGCCGCCGGGGTACGGCTTGCTGGACTCCTTATTCCGCCCA
CGGGGTGTCAGCGATGATGCCATGGTGAAGATAGTCCCGTCGCGAGTCGG
GTAA