EsuBft468_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft468_3a-0001
Unique NameEsuBft468_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_189contigScaffold_189:351229..355526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft468_3
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon9
Length144
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft468_3aEsuBft468_3aEctocarpus subulatus male Bft15bgeneScaffold_189 351229..355526 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft468_3a-0001EsuBft468_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_189 351229..355487 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft468_3a-0001-exonagat-exon-28068Ectocarpus subulatus male Bft15bexonScaffold_189 351229..351377 +
EsuBft468_3a-0001-exonagat-exon-28069Ectocarpus subulatus male Bft15bexonScaffold_189 351807..351861 +
EsuBft468_3a-0001-exonagat-exon-28074Ectocarpus subulatus male Bft15bexonScaffold_189 352408..352937 +
EsuBft468_3a-0001-exonEsuBft468_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_189 353159..353162 +
EsuBft468_3a-0001-exonagat-exon-28070Ectocarpus subulatus male Bft15bexonScaffold_189 353648..353710 +
EsuBft468_3a-0001-exonagat-exon-28073Ectocarpus subulatus male Bft15bexonScaffold_189 353935..354044 +
EsuBft468_3a-0001-exonagat-exon-28071Ectocarpus subulatus male Bft15bexonScaffold_189 354598..354742 +
EsuBft468_3a-0001-exonagat-exon-28072Ectocarpus subulatus male Bft15bexonScaffold_189 354856..354960 +
EsuBft468_3a-0001-exonagat-exon-28067Ectocarpus subulatus male Bft15bexonScaffold_189 355245..355526 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft468_3a-0001-cdsEsuBft468_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_189 351229..351377 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft468_3a-0001-exonagat-three_prime_utr-16577Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_189 355488..355526 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft468_3a-0001 ID=EsuBft468_3a-0001|Name=EsuBft468_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1443bp|location=Sequence derived from alignment at Scaffold_189:351229..355526+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGCCACCCAAGACATCGACATTGAGCTTCTTCGATCCCTCGTGGA
GGTAGCCATGATGAAGGGCTTCCGCGGCGGGAAGCTCGAGGAGGCTATCG
CGGCGGTGGCGCAGTACGACCGCCAGCAGGCTGTCGTTGCGATGATGAGG
AGCCTTCCCGAACGGCTGATGTCCAAGGCGGCCGAGGTTGCTCGCGACGT
CAGGAGGCGCTCCGACATCCAGCTCAGCCAGATCGCTGGGCTGGAGGAGG
AGGTGCTTCTGCTGGCCTCGACCGTAAAGGGGCTGCAGCACTCGGCCGCG
ATCGACGCCGCCCGCTTGGCGTCGGAGAGGACGGCTGCCAAGGCCGCCAG
CGACGACGCTGCTGCGCTCGCTCAAACCCTCCGAGCCGACGTCAAGAGGC
TGCAAGACACGGTCGTCAACCTAGAGACCGTTGCCGCTACTGACGCGGCG
AAGTTCCTCACGACGGAGGTCGACCTTCGCGCCGAGCTCGTCGCCGCTGA
CGGCACGATCGACTCCCTCAAGTCCACCGTGCGACAACAGCGCCAAGACC
TTGCGTCGTGCCAGCACGACATGGCAGAAGTGGACGAGGCGTCGTTCACC
CTCTCCCTCTTGGCGGGAGAGAGCACGCACCTCCTCAGAGGGGGTCTCCA
GCCGGCTACCCCCAGGCCTGCGGAGGCCACCACGTGGGCAGCGGCCGGCC
TGTCGGCAGCTCACGAGGCGCGTCAACGCACGTGCGGGCATGAGGAAGAA
GAGCGGCAGCGTCAGGCCCTCGAAGAGGAGATGGTGGACCTCCAGAACGA
AGTGGACGAGGCGGAGACGGCTGCCGATTCGTGTGCGGCCAGCCTGGAGA
AACTCGACGAGCAGACTGTTGCCGTTCTGACCGCGGTCGAGAAGACCGTT
GGCGCTCAGAGCACTCGCTTGGGGGAGATCGGAGACGTGGCGCTGTCCTT
CACCAGGCAGCTGCTGGACGACCTCTCCGGCTGCCGGCAACAGGTCGTAG
AAGTGGAGGAGAGGGCGATGGACCGCCTGGAGGAGACGATGGCCTCTGAG
GAAGAGTCTACATACATGCACAGCAGCGCTTCATGTGTTCAAGCATGCCT
TGAGCGGTCGCAACATCATCGCCGGGAGAGATCCAGCGGTGAGTTTGTAC
ACAGAAGGGGGGCTCGCGAGACCCAAGCGGCGTTTCGGGCGTGCGCAGCG
GGGCTCGAGCGACTGGATTCCCAGTCGCTAGACCTCGCCCGCTTCTTGGC
CGACAAGGCCATGCAAGCGGGAGCACCGGTGTCCATTGCGAATGCAGTGG
AGGCACCCAAGCCGCCGGGGTACGGCTTGCTGGACTCCTTATTCCGCCCA
CGGGGTGTCAGCGATGATGCCATGGTGAAGATAGTCCCGTCGCGAGTCGG
GTAAGCATTCTTATGCGTTGTTGGATGCAAGGGGAGAGTGCAT
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protein sequence of EsuBft468_3a-0001

>EsuBft468_3 ID=EsuBft468_3|Name=EsuBft468_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=467bp
MKATQDIDIELLRSLVEVAMMKGFRGGKLEEAIAAVAQYDRQQAVVAMMR
SLPERLMSKAAEVARDVRRRSDIQLSQIAGLEEEVLLLASTVKGLQHSAA
IDAARLASERTAAKAASDDAAALAQTLRADVKRLQDTVVNLETVAATDAA
KFLTTEVDLRAELVAADGTIDSLKSTVRQQRQDLASCQHDMAEVDEASFT
LSLLAGESTHLLRGGLQPATPRPAEATTWAAAGLSAAHEARQRTCGHEEE
ERQRQALEEEMVDLQNEVDEAETAADSCAASLEKLDEQTVAVLTAVEKTV
GAQSTRLGEIGDVALSFTRQLLDDLSGCRQQVVEVEERAMDRLEETMASE
EESTYMHSSASCVQACLERSQHHRRERSSGEFVHRRGARETQAAFRACAA
GLERLDSQSLDLARFLADKAMQAGAPVSIANAVEAPKPPGYGLLDSLFRP
RGVSDDAMVKIVPSRVG
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mRNA from alignment at Scaffold_189:351229..355526+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft468_3a-0001 ID=EsuBft468_3a-0001|Name=EsuBft468_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4298bp|location=Sequence derived from alignment at Scaffold_189:351229..355526+ (Ectocarpus subulatus male Bft15b)
ATGAAGGCCACCCAAGACATCGACATTGAGCTTCTTCGATCCCTCGTGGA
GGTAGCCATGATGAAGGGCTTCCGCGGCGGGAAGCTCGAGGAGGCTATCG
CGGCGGTGGCGCAGTACGACCGCCAGCAGGCTGTCGTTGCGATGATGAGG
TGAGAGGGCAGTGTCACGTTGTTGTTTTTTTGCCCTTTGTCCGTCTGGTC
ACTCCTCCGATCATCAAAGTCCACGATTGATCATCAAATCGTGCTGTTTT
CCAAGGTCCTCCCCCCCGCCAACGGAGTCAAGGTCGGGAGCAATAGCTAG
CTCGGTGGGAGTCATGTACCGTGAGTCTCTGTGCTCGGTGCCATGTGCAG
TAGATGTAGCATGCGTGACTGCTGCGGTGTTACCGCGGTGCACGTTCGTG
GTGCGCCGTTTGTCCATCATTTCCATCATGGCGGAGGTTACGTAGATCGA
GCTGTTTCGTACAACACGTGCGCGTTCCTACGTAGCCGCCGTGTCTGAAG
GACCCGCACTGTTTTTTCCAATCCGCCGTCTGGTACTTCCGCATCGATGC
CGTTTCCGTTCTTGGAATTTGTTTTCAGGAGCCTTCCCGAACGGCTGATG
TCCAAGGCGGCCGAGGTTGCTCGCGACGTCAGGGTAAGCCCTATCTCGTC
CATCCACTAGAGTGATGGATTGCTGAGTGCGGTATAGACGTCTCCGGCAG
TTCCCATGAGCTGCTATTTTTACAAAGGCAACACAAAAATAGCCTGAGAC
AACATTTCGCTTCGCGGTACACCCCATCGTGGTTATGTGTGTTACCATGT
CACCGCTCGCTGTAGTGTACACTCGGAGTAACGAACGTGGTACCGTGAAA
CCGTCGTGATGTGTACGTGTCCTTCCTTCAGTGGACGCCACCCCCCACCC
CCCCCCAATAGACGACAAACCGTGTTTCACAACAACCGTCGAGAAACCGC
AGGCTTTTTTTTTGCGCCAGGCAGTGTGTCGCTCCGTGGAATCACAGGAA
TATCCATCGCACACACGCTCGCATTCCGGCAGCGTTGTTGCCGCTCTTGT
TGCTGTTGCGGTTTCTTGGCGTAGTTGTTGTCGGTGTCTTTACAGTTGCT
CCGAAGTTTCTCCTCCACACTCACACGCCCCTTCTTCTTCCATTTCCACC
CGCCATGATACGTGGTAACGTGCCGCCAGAGGCGCTCCGACATCCAGCTC
AGCCAGATCGCTGGGCTGGAGGAGGAGGTGCTTCTGCTGGCCTCGACCGT
AAAGGGGCTGCAGCACTCGGCCGCGATCGACGCCGCCCGCTTGGCGTCGG
AGAGGACGGCTGCCAAGGCCGCCAGCGACGACGCTGCTGCGCTCGCTCAA
ACCCTCCGAGCCGACGTCAAGAGGCTGCAAGACACGGTCGTCAACCTAGA
GACCGTTGCCGCTACTGACGCGGCGAAGTTCCTCACGACGGAGGTCGACC
TTCGCGCCGAGCTCGTCGCCGCTGACGGCACGATCGACTCCCTCAAGTCC
ACCGTGCGACAACAGCGCCAAGACCTTGCGTCGTGCCAGCACGACATGGC
AGAAGTGGACGAGGCGTCGTTCACCCTCTCCCTCTTGGCGGGAGAGAGCA
CGCACCTCCTCAGAGGGGGTCTCCAGCCGGCTACCCCCAGGCCTGCGGAG
GCCACCACGTGGGCAGCGGCCGGCCTGTCGGCAGCTCACGAGGCGCGTCA
ACGCACGTGGTGAGCGAGCTCTTCAGCGTGCTAGCGCCCCCACGTAAATT
GTGGTAATTTGGCGCGGATCTACGCGGTGTCGGTGGTGCTTGTTGTTTGT
GGTTCGTTTGGTTGTTGATGATGAGGTTGGAATTGGCGCTTGGTTCCGAT
GATTTGTCGACCCCTCTCTCACCGTTGGTGTACAGTAGCAGGGAGTGTTT
GATGTCGATGGCTAAAGGTTGTTCGTGTAGCGGGGTACAGGATGAACTTG
AAATGTTGAACCGAGGGTGTGCTGGTATTTACGAATTCTTTCCCTATCGA
GGAACCATCAAGGCAATCTCGGCTTGCCGCAGGTGGACAGCAACATGTCC
ACTCGTCAACCTTTACACCACGTTGTGCGATTTGATGCGAAATATGAAAT
GGCTCTGCCTCTGTTGCGATTGAGTTGCGGCGGCTCTCACTCAAATCCTT
GACGGTGTCAACACTCCCGATCCTCCTGATTCGAATAACAGCCAAGCCGT
TCATGTTCAAGCCGGCCCGGTCGGTACTCCTATTGTCAAGGTACTCCTAT
TGCCATTCTTGTTTCAGGGCGTTGCTCCCCGCTGTATCTCACAATGCCCT
GACCCCGCAGTGACCGGGCATCAACAGCAGAGCGTGTGCCCATTCTCTCC
CTGCTTGTGGTGTGTTGCAGTGCTCGCCTGGATGGAGTCGCGACGACGAT
CTACTCCTTCTCGGCCAAGCATGAGGAAGAAGAGCGGCAGCGTCAGGCCC
TCGAAGAGGAGATGGTGGACCTCCAGAACGAAGTAAGTACCCCGTCTGAG
TTTTTTTTAGTGTTTTTGGACGCGTGCTGCTGTCTGCAGTGCAGTGATGT
GTAGTGTATGGCCTGAAAGACCGAGAACAACCATCGAAGGGAAGACAGCA
ACCCTCTTGACCCTCATCGCTCACCCGCTCTCCGCCCTCCCCACACCGCA
ATCTCGCCACTGCCTTTGTTTTGGCTCGAAATCTGGTCGCCGTTAACCGT
GCGCAGGTGGACGAGGCGGAGACGGCTGCCGATTCGTGTGCGGCCAGCCT
GGAGAAACTCGACGAGCAGACTGTTGCCGTTCTGACCGCGGTCGAGAAGA
CCGTTGGCGCTCAGAGGTGGGGCGGGGAAGGGAGCGTCTCCTCCGCGGCA
ACCTACGACAAGATCCGGTACGTCCTCGTCGTTGTTTCCGGTTGACCTCA
AGGGGGGGGGGCACGTGATGGGGCAATAGTGTCGGTTTGGCAGTGACTAC
CGTTGGTGTCGTTGTGCTTGGCGATGGTTGCTCGTGAAAGCGTTGTTGCT
GCTGTCACTAGCCAGTTGTTTCTGTAGTTTGTGCGGGCGGACCCGTGCAG
TCTCGACGACCTGTTTGGTAACATGGGAGCCATTTGGGGAGATATGTTCA
CCCAGGATTGAAGTCCTGATCGTTGTGGAGCGTCCCGCTCGCGCCGTGTG
TTGCTTGGTCCCGACAACTTTCGACAGTTGCTAGCCGCAATTTTCATGGT
CGGGCCTAGGTGTTTGCACGACCAAACGAACCCTGGACACCCCCTGCCGC
CCTCTGTCTTGAAATGAGGCGAGAGGCTAGAGGAGGGGCGACAGAAGCAA
GCAGTAGCCGTGGCCCTCCCCTTCACCCTCCGCTCCCTCGTCTCGGCTGC
TTCGATGCTCTTCATTTAGCACTCGCTTGGGGGAGATCGGAGACGTGGCG
CTGTCCTTCACCAGGCAGCTGCTGGACGACCTCTCCGGCTGCCGGCAACA
GGTCGTAGAAGTGGAGGAGAGGGCGATGGACCGCCTGGAGGAGACGATGG
CCTCTGAGGAAGAGGTATGCATCAGATGCACCTGCCTGAGCGTGACGCCA
AGGGTACTGTACCGTGTGTCACTCTATTGCTGGTATCAGGGTGATCAATC
ACGGGGCCCGACTATTCCGATCAATAGTCTACATACATGCACAGCAGCGC
TTCATGTGTTCAAGCATGCCTTGAGCGGTCGCAACATCATCGCCGGGAGA
GATCCAGCGGTGAGTTTGTACACAGAAGGGGGGTGGGGGAAAGTGATGCT
CGATGTCACCCTTTGGCATCGAACGAAATAGGCAGTGGATCATGGATCAT
GCGTTGGGAATGGGGGGAGGGGGGGGTACATACACGCTTGTCGAACCTGT
TGGTATTGGGGTGCATGGGCAGCCCACCGTCCGTGGATAGATAGCACAGC
CCGACCCCCGGAGAGCCAGTCATGAAGAGAGCGACTCTGTAACCCCCGTC
TACAAGCCGTCGGCCCCTACCGCTGTGTCTCGTTGGTTGTTTTTGTGCGA
CTCTCACTTGTAACAGGCTCGCGAGACCCAAGCGGCGTTTCGGGCGTGCG
CAGCGGGGCTCGAGCGACTGGATTCCCAGTCGCTAGACCTCGCCCGCTTC
TTGGCCGACAAGGCCATGCAAGCGGGAGCACCGGTGTCCATTGCGAATGC
AGTGGAGGCACCCAAGCCGCCGGGGTACGGCTTGCTGGACTCCTTATTCC
GCCCACGGGGTGTCAGCGATGATGCCATGGTGAAGATAGTCCCGTCGCGA
GTCGGGTAAGCATTCTTATGCGTTGTTGGATGCAAGGGGAGAGTGCAT
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Coding sequence (CDS) from alignment at Scaffold_189:351229..355526+

>EsuBft468_3a-0001 ID=EsuBft468_3a-0001|Name=EsuBft468_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1404bp|location=Sequence derived from alignment at Scaffold_189:351229..355526+ (Ectocarpus subulatus male Bft15b)
ATGAAGGCCACCCAAGACATCGACATTGAGCTTCTTCGATCCCTCGTGGA
GGTAGCCATGATGAAGGGCTTCCGCGGCGGGAAGCTCGAGGAGGCTATCG
CGGCGGTGGCGCAGTACGACCGCCAGCAGGCTGTCGTTGCGATGATGAGG
AGCCTTCCCGAACGGCTGATGTCCAAGGCGGCCGAGGTTGCTCGCGACGT
CAGGAGGCGCTCCGACATCCAGCTCAGCCAGATCGCTGGGCTGGAGGAGG
AGGTGCTTCTGCTGGCCTCGACCGTAAAGGGGCTGCAGCACTCGGCCGCG
ATCGACGCCGCCCGCTTGGCGTCGGAGAGGACGGCTGCCAAGGCCGCCAG
CGACGACGCTGCTGCGCTCGCTCAAACCCTCCGAGCCGACGTCAAGAGGC
TGCAAGACACGGTCGTCAACCTAGAGACCGTTGCCGCTACTGACGCGGCG
AAGTTCCTCACGACGGAGGTCGACCTTCGCGCCGAGCTCGTCGCCGCTGA
CGGCACGATCGACTCCCTCAAGTCCACCGTGCGACAACAGCGCCAAGACC
TTGCGTCGTGCCAGCACGACATGGCAGAAGTGGACGAGGCGTCGTTCACC
CTCTCCCTCTTGGCGGGAGAGAGCACGCACCTCCTCAGAGGGGGTCTCCA
GCCGGCTACCCCCAGGCCTGCGGAGGCCACCACGTGGGCAGCGGCCGGCC
TGTCGGCAGCTCACGAGGCGCGTCAACGCACGTGCGGGCATGAGGAAGAA
GAGCGGCAGCGTCAGGCCCTCGAAGAGGAGATGGTGGACCTCCAGAACGA
AGTGGACGAGGCGGAGACGGCTGCCGATTCGTGTGCGGCCAGCCTGGAGA
AACTCGACGAGCAGACTGTTGCCGTTCTGACCGCGGTCGAGAAGACCGTT
GGCGCTCAGAGCACTCGCTTGGGGGAGATCGGAGACGTGGCGCTGTCCTT
CACCAGGCAGCTGCTGGACGACCTCTCCGGCTGCCGGCAACAGGTCGTAG
AAGTGGAGGAGAGGGCGATGGACCGCCTGGAGGAGACGATGGCCTCTGAG
GAAGAGTCTACATACATGCACAGCAGCGCTTCATGTGTTCAAGCATGCCT
TGAGCGGTCGCAACATCATCGCCGGGAGAGATCCAGCGGTGAGTTTGTAC
ACAGAAGGGGGGCTCGCGAGACCCAAGCGGCGTTTCGGGCGTGCGCAGCG
GGGCTCGAGCGACTGGATTCCCAGTCGCTAGACCTCGCCCGCTTCTTGGC
CGACAAGGCCATGCAAGCGGGAGCACCGGTGTCCATTGCGAATGCAGTGG
AGGCACCCAAGCCGCCGGGGTACGGCTTGCTGGACTCCTTATTCCGCCCA
CGGGGTGTCAGCGATGATGCCATGGTGAAGATAGTCCCGTCGCGAGTCGG
GTAA
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