EsuBft359_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
Seed ortholog	298654.FraEuI1c_3669
ProteomeId	EsuBft359_10
Protein domains	IPR011010
Protein domains	SignalP-noTM
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	IPR013762
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SIGNAL_PEPTIDE
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	201174\|Actinobacteria
Length	148
Hectar predicted targeting category	signal peptide
Evalue	1.02e-05
EggNOG OGs	COG4974@1\|root,COG4974@2\|Bacteria,2IBWD@201174\|Actinobacteria,4EVIA@85013\|Frankiales
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Belongs to the 'phage' integrase family
COG category	L

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_233:264811..266299-
coding sequence from alignment at Scaffold_233:264811..266299-

spliced messenger RNA

>EsuBft359_10a-0001 ID=EsuBft359_10a-0001|Name=EsuBft359_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1489bp|location=Sequence derived from alignment at Scaffold_233:264811..266299- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ACCAGTTTCGGAAGGGGGCGGTTTGCACGCGCACACGGCAAGGTCCGTGC
TGTGGGGTTGACCGAGGGGGTGGTGCAGTGGATGTCATGGTGGAGCTGCT
TTCTCTGTATACCTTTTTGCCTTCGCATGCGCCTCTCGTGGCCTTTCGGT
GTTGGTCAGGGCCAGTGGGCCATGTGGACTAAGTGTCAAGCTACTGTGGC
TCTTCGCCAAGTGGTTGCGTTGGCGGGTTTGCAGCCCGAGGAGTACGCGC
TGCACTCCCTGAGAATTGGGGGCGCAACTTTCTTGGCGGCGGAGGGGGCT
TCGCCGGAGGTTCTCCGAAGAGAAGGGCGTTGGTCGGGGGAGAGTAGTCA
CCAGTGTTACGTTCGGAATGTTGGGGGTGACGCTTCGTGGGTGTCAGAGG
TGTTGGCGAACAAGGAGAAGGTGTCTACACAGCCAGGGCAGGGTACCCGA
TGGGGTGACGTGTGAAGGGGTTCCGTGGCACGTTGTGTATGTCGAGATCC
TTGTTGTACCGATGGTATTTTGCTGTACATATTGTATGCCGTATATCTTC
TCCCTTCTTCCCCTCGCTCCTCGACAAGCTTTTGCTTAGACATGGGTTGT
AGCGAAGGGGGGGGTCTTTCTGGCGAGCAGGGCTAGACTCACCCTCAANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNAGCCGCAGTCGGGGTTGCGTGTGCCTGTGCTGGGCGCAGTTCCG
AGGTGCTCGTCCCATTTATTTTTGGGTGGGATTTGTGTATATCGCATTTC
AGGTTTTATATGCAGGACGCATGTTGTTGGGTGTATCGGACCGTTGCATG
GTTGGGGGAGTGCACTCCTGGCTGCTGTGTGTGGCTATGTTGGTGCTACG
CGCTTCCCCGTTACGTGCGTGACGAGTCTGATTGATTGGTGGATACGCAT
ACATATTATATGGCTTATATGTGGGTGTCCTGGTGTCCGGGTACATGCGT
GTTTTTCTGCAGTGCGATCTGAAGGTCAGGGGAACAGAG

protein sequence of EsuBft359_10a-0001

>EsuBft359_10 ID=EsuBft359_10|Name=EsuBft359_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=127bp
MSWWSCFLCIPFCLRMRLSWPFGVGQGQWAMWTKCQATVALRQVVALAGL
QPEEYALHSLRIGGATFLAAEGASPEVLRREGRWSGESSHQCYVRNVGGD
ASWVSEVLANKEKVSTQPGQGTRWGDV

mRNA from alignment at Scaffold_233:264811..266299-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft359_10a-0001 ID=EsuBft359_10a-0001|Name=EsuBft359_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1489bp|location=Sequence derived from alignment at Scaffold_233:264811..266299- (Ectocarpus subulatus male Bft15b)
ACCAGTTTCGGAAGGGGGCGGTTTGCACGCGCACACGGCAAGGTCCGTGC
TGTGGGGTTGACCGAGGGGGTGGTGCAGTGGATGTCATGGTGGAGCTGCT
TTCTCTGTATACCTTTTTGCCTTCGCATGCGCCTCTCGTGGCCTTTCGGT
GTTGGTCAGGGCCAGTGGGCCATGTGGACTAAGTGTCAAGCTACTGTGGC
TCTTCGCCAAGTGGTTGCGTTGGCGGGTTTGCAGCCCGAGGAGTACGCGC
TGCACTCCCTGAGAATTGGGGGCGCAACTTTCTTGGCGGCGGAGGGGGCT
TCGCCGGAGGTTCTCCGAAGAGAAGGGCGTTGGTCGGGGGAGAGTAGTCA
CCAGTGTTACGTTCGGAATGTTGGGGGTGACGCTTCGTGGGTGTCAGAGG
TGTTGGCGAACAAGGAGAAGGTGTCTACACAGCCAGGGCAGGGTACCCGA
TGGGGTGACGTGTGAAGGGGTTCCGTGGCACGTTGTGTATGTCGAGATCC
TTGTTGTACCGATGGTATTTTGCTGTACATATTGTATGCCGTATATCTTC
TCCCTTCTTCCCCTCGCTCCTCGACAAGCTTTTGCTTAGACATGGGTTGT
AGCGAAGGGGGGGGTCTTTCTGGCGAGCAGGGCTAGACTCACCCTCAANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNAGCCGCAGTCGGGGTTGCGTGTGCCTGTGCTGGGCGCAGTTCCG
AGGTGCTCGTCCCATTTATTTTTGGGTGGGATTTGTGTATATCGCATTTC
AGGTTTTATATGCAGGACGCATGTTGTTGGGTGTATCGGACCGTTGCATG
GTTGGGGGAGTGCACTCCTGGCTGCTGTGTGTGGCTATGTTGGTGCTACG
CGCTTCCCCGTTACGTGCGTGACGAGTCTGATTGATTGGTGGATACGCAT
ACATATTATATGGCTTATATGTGGGTGTCCTGGTGTCCGGGTACATGCGT
GTTTTTCTGCAGTGCGATCTGAAGGTCAGGGGAACAGAG

Coding sequence (CDS) from alignment at Scaffold_233:264811..266299-

>EsuBft359_10a-0001 ID=EsuBft359_10a-0001|Name=EsuBft359_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=384bp|location=Sequence derived from alignment at Scaffold_233:264811..266299- (Ectocarpus subulatus male Bft15b)
ATGTCATGGTGGAGCTGCTTTCTCTGTATACCTTTTTGCCTTCGCATGCG
CCTCTCGTGGCCTTTCGGTGTTGGTCAGGGCCAGTGGGCCATGTGGACTA
AGTGTCAAGCTACTGTGGCTCTTCGCCAAGTGGTTGCGTTGGCGGGTTTG
CAGCCCGAGGAGTACGCGCTGCACTCCCTGAGAATTGGGGGCGCAACTTT
CTTGGCGGCGGAGGGGGCTTCGCCGGAGGTTCTCCGAAGAGAAGGGCGTT
GGTCGGGGGAGAGTAGTCACCAGTGTTACGTTCGGAATGTTGGGGGTGAC
GCTTCGTGGGTGTCAGAGGTGTTGGCGAACAAGGAGAAGGTGTCTACACA
GCCAGGGCAGGGTACCCGATGGGGTGACGTGTGA