EsuBft359_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft359_10a-0001
Unique Name	EsuBft359_10a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_233	contig	Scaffold_233:264811..266299 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	298654.FraEuI1c_3669
ProteomeId	EsuBft359_10
Protein domains	IPR011010
Protein domains	SignalP-noTM
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	IPR013762
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SIGNAL_PEPTIDE
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	201174\|Actinobacteria
Length	148
Hectar predicted targeting category	signal peptide
Evalue	1.02e-05
EggNOG OGs	COG4974@1\|root,COG4974@2\|Bacteria,2IBWD@201174\|Actinobacteria,4EVIA@85013\|Frankiales
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Belongs to the 'phage' integrase family
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003677
GO	0015074
GO	0006310

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft359_10a	EsuBft359_10a	Ectocarpus subulatus male Bft15b	gene	Scaffold_233 264811..266299 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft359_10a-0001-exon	EsuBft359_10a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_233 264811..266299 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft359_10a-0001-exon	agat-three_prime_utr-13870	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_233 264811..265834 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft359_10a-0001-cds	EsuBft359_10a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_233 265835..266218 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft359_10a-0001-exon	agat-five_prime_utr-8799	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_233 266219..266299 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft359_10a-0001	EsuBft359_10	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_233 265835..266218 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_233:264811..266299-
coding sequence from alignment at Scaffold_233:264811..266299-

spliced messenger RNA

>EsuBft359_10a-0001 ID=EsuBft359_10a-0001|Name=EsuBft359_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1489bp|location=Sequence derived from alignment at Scaffold_233:264811..266299- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ACCAGTTTCGGAAGGGGGCGGTTTGCACGCGCACACGGCAAGGTCCGTGC
TGTGGGGTTGACCGAGGGGGTGGTGCAGTGGATGTCATGGTGGAGCTGCT
TTCTCTGTATACCTTTTTGCCTTCGCATGCGCCTCTCGTGGCCTTTCGGT
GTTGGTCAGGGCCAGTGGGCCATGTGGACTAAGTGTCAAGCTACTGTGGC
TCTTCGCCAAGTGGTTGCGTTGGCGGGTTTGCAGCCCGAGGAGTACGCGC
TGCACTCCCTGAGAATTGGGGGCGCAACTTTCTTGGCGGCGGAGGGGGCT
TCGCCGGAGGTTCTCCGAAGAGAAGGGCGTTGGTCGGGGGAGAGTAGTCA
CCAGTGTTACGTTCGGAATGTTGGGGGTGACGCTTCGTGGGTGTCAGAGG
TGTTGGCGAACAAGGAGAAGGTGTCTACACAGCCAGGGCAGGGTACCCGA
TGGGGTGACGTGTGAAGGGGTTCCGTGGCACGTTGTGTATGTCGAGATCC
TTGTTGTACCGATGGTATTTTGCTGTACATATTGTATGCCGTATATCTTC
TCCCTTCTTCCCCTCGCTCCTCGACAAGCTTTTGCTTAGACATGGGTTGT
AGCGAAGGGGGGGGTCTTTCTGGCGAGCAGGGCTAGACTCACCCTCAANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNAGCCGCAGTCGGGGTTGCGTGTGCCTGTGCTGGGCGCAGTTCCG
AGGTGCTCGTCCCATTTATTTTTGGGTGGGATTTGTGTATATCGCATTTC
AGGTTTTATATGCAGGACGCATGTTGTTGGGTGTATCGGACCGTTGCATG
GTTGGGGGAGTGCACTCCTGGCTGCTGTGTGTGGCTATGTTGGTGCTACG
CGCTTCCCCGTTACGTGCGTGACGAGTCTGATTGATTGGTGGATACGCAT
ACATATTATATGGCTTATATGTGGGTGTCCTGGTGTCCGGGTACATGCGT
GTTTTTCTGCAGTGCGATCTGAAGGTCAGGGGAACAGAG

protein sequence of EsuBft359_10a-0001

>EsuBft359_10 ID=EsuBft359_10|Name=EsuBft359_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=127bp
MSWWSCFLCIPFCLRMRLSWPFGVGQGQWAMWTKCQATVALRQVVALAGL
QPEEYALHSLRIGGATFLAAEGASPEVLRREGRWSGESSHQCYVRNVGGD
ASWVSEVLANKEKVSTQPGQGTRWGDV

mRNA from alignment at Scaffold_233:264811..266299-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft359_10a-0001 ID=EsuBft359_10a-0001|Name=EsuBft359_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1489bp|location=Sequence derived from alignment at Scaffold_233:264811..266299- (Ectocarpus subulatus male Bft15b)
ACCAGTTTCGGAAGGGGGCGGTTTGCACGCGCACACGGCAAGGTCCGTGC
TGTGGGGTTGACCGAGGGGGTGGTGCAGTGGATGTCATGGTGGAGCTGCT
TTCTCTGTATACCTTTTTGCCTTCGCATGCGCCTCTCGTGGCCTTTCGGT
GTTGGTCAGGGCCAGTGGGCCATGTGGACTAAGTGTCAAGCTACTGTGGC
TCTTCGCCAAGTGGTTGCGTTGGCGGGTTTGCAGCCCGAGGAGTACGCGC
TGCACTCCCTGAGAATTGGGGGCGCAACTTTCTTGGCGGCGGAGGGGGCT
TCGCCGGAGGTTCTCCGAAGAGAAGGGCGTTGGTCGGGGGAGAGTAGTCA
CCAGTGTTACGTTCGGAATGTTGGGGGTGACGCTTCGTGGGTGTCAGAGG
TGTTGGCGAACAAGGAGAAGGTGTCTACACAGCCAGGGCAGGGTACCCGA
TGGGGTGACGTGTGAAGGGGTTCCGTGGCACGTTGTGTATGTCGAGATCC
TTGTTGTACCGATGGTATTTTGCTGTACATATTGTATGCCGTATATCTTC
TCCCTTCTTCCCCTCGCTCCTCGACAAGCTTTTGCTTAGACATGGGTTGT
AGCGAAGGGGGGGGTCTTTCTGGCGAGCAGGGCTAGACTCACCCTCAANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNAGCCGCAGTCGGGGTTGCGTGTGCCTGTGCTGGGCGCAGTTCCG
AGGTGCTCGTCCCATTTATTTTTGGGTGGGATTTGTGTATATCGCATTTC
AGGTTTTATATGCAGGACGCATGTTGTTGGGTGTATCGGACCGTTGCATG
GTTGGGGGAGTGCACTCCTGGCTGCTGTGTGTGGCTATGTTGGTGCTACG
CGCTTCCCCGTTACGTGCGTGACGAGTCTGATTGATTGGTGGATACGCAT
ACATATTATATGGCTTATATGTGGGTGTCCTGGTGTCCGGGTACATGCGT
GTTTTTCTGCAGTGCGATCTGAAGGTCAGGGGAACAGAG

Coding sequence (CDS) from alignment at Scaffold_233:264811..266299-

>EsuBft359_10a-0001 ID=EsuBft359_10a-0001|Name=EsuBft359_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=384bp|location=Sequence derived from alignment at Scaffold_233:264811..266299- (Ectocarpus subulatus male Bft15b)
ATGTCATGGTGGAGCTGCTTTCTCTGTATACCTTTTTGCCTTCGCATGCG
CCTCTCGTGGCCTTTCGGTGTTGGTCAGGGCCAGTGGGCCATGTGGACTA
AGTGTCAAGCTACTGTGGCTCTTCGCCAAGTGGTTGCGTTGGCGGGTTTG
CAGCCCGAGGAGTACGCGCTGCACTCCCTGAGAATTGGGGGCGCAACTTT
CTTGGCGGCGGAGGGGGCTTCGCCGGAGGTTCTCCGAAGAGAAGGGCGTT
GGTCGGGGGAGAGTAGTCACCAGTGTTACGTTCGGAATGTTGGGGGTGAC
GCTTCGTGGGTGTCAGAGGTGTTGGCGAACAAGGAGAAGGTGTCTACACA
GCCAGGGCAGGGTACCCGATGGGGTGACGTGTGA