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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
ProteomeId | EsuBft262_10 |
Owner | apollo_admin@sb-roscoff.fr |
Nb exon | 6 |
Length | 255 |
Hectar predicted targeting category | other localisation |
Ec32 ortholog description | expressed unknown protein |
Ec32 ortholog | Ec-26_002250.1 |
Date last modified | 2016-06-14 |
Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft262_10a-0001 ID=EsuBft262_10a-0001|Name=EsuBft262_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2552bp|location=Sequence derived from alignment at Scaffold_647:477094..481794+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GGAAGAAGGCGGGAGAGACAGGGAGCTTCAAAGAACACAGACACAAATTC GGGATCTACTGAATCCATGGAGCTCTCTGATGATGAGCGTATTGGTCTGG TCGGGTTTCTGAGCGAGCACGTGAACAAGAACCAGCTCGAGATGGTGGAA CACAAAGCCTGGACCTGCCTTAAAGACGATGCTGATCACAAGATTCTCAA AGGCATCCGGAAGTTGGTGTTCGTGCGCATGGACAGCCCCGAGAGCATGT CTCAGTCCAACTTCAACAACCTAGTTAACAGACGCTTGGGGTTACCTCCG GGGCAGCAACAGCAACAGGGTGGTTCTGCCAATGCAGCGAATAGCAGCAC TCCCAACCATGCGGGTAGTGCCGGCGGGGGCGGTGGCGGACCCAGAGGAG GCCCTGCTCAAAGGGCCAACCATAGTGGCGCCGTAAACGGTAACCCCAAC CCTGCCAGTGGCGGTTCCGGGGGCGGAGGTGGATCTGGACAAGGCTCTGC TCAAGGGGCCAGCCGCGTTGGCCCTTCTAACGGTAGCCCCAGCCCTGCGG GTGGTGGTTCCCGGAGTCGCGGAGGCGATTCTGCTCAATCGCCCATCCAT GTGTCTGCGGTAGAGTTAGAAGACACCGACGAAGAAGAAGGAAACACCAT GTCTGAGCACGACCAGAACGACGACAACGGGGAAGATTCCGACGGGGGGG ATACCGACCTCGAGGATACCCCCGCGGCGAAATATGAAGAGCACAAATCC GGCTTCCTTCAGCGCCGTAGATGGAAGGTGAAGGAGTTCGAGCCTCCGGG AGAGCCGCCCGGGAACGGCTACTGGGTCGATCCAAGTAGCGAGGATGACG GAATAGTGCTGTTTCGGATGCCGAAACCGGGCGACTTGGAGCAAGCGAAA CCCCGACCCGCGCCGACCTACATCACCAATAACCCTTACTGCACGGATGC CCCGAAGGCGTCGTTCGTTAAGAGGGTCGCGATGTACGGCCTCTTAAAAG TCGTGGCTGTTTCTTCCCAGGGCGGAATTTGGCGGGCTCCCGATGCAGAC ATCGAGAGGGTCCTGAGAAAGGACCCTCGCGTTCCATCCGATATATCTGC CATGCCTGGTGATGCATACGTCAAGGTCATGGGGGAGGCTTTCCGTCGCC ACCAAGAAGAAAGATATGAGATCCAAAGGCAGGCTGAAGAAGAGTGCGAG GATGAAGTCGCTGCCCCACAGGGGAAGCGCAGTCGGGTAGATATCAACTC TTGATTTTGCAGGGCACGGTGCACGACCGACCGTAGACCGCGTGCAACCC CATGGATTTTGGTTTGGTTCAGGTCTCCAGGCCATGAATTTCGTTTTGGG GGAGGAATCTGTGCCGGACTAAGTATTGAGTTTTTTTAGCCGGACCCGCC GTCGAGTCTCATTTAGCTATGATATGTAGGTCGTGTTTTCACAGTTGATT CCTGAGCATGGTAGCAACCGGGAGTTACATCCCTGCGGCCTTGCCCGAGC ACTGGTATTTTGTTGCACACCACCAGCGAGCGTACGTAAGTCTTGTGGGC TTGCGTGTTTGGTTGAAAGGGCGCAAGATGCCGCAGCTGATCTCTTGTGT GTCGTGTGAAGAGCTAGTTTATTGTTGGCTGCCAAGCCAGTACTCAAGCC ACCCACAACAAACTACGACGACATTTGACTTTGCCAAGTAACTTCCGCAA CATTCCCCGCCGTGGCACAGCCACCGACAGACGTAGGATCACCTGGGTGC TTGCTGAATGTGCCACAGTGGCGGCTCGTCGGGAGGGGTGGTTGCCGCGT GCGTAGCGGACTGAAAAGCGCTTCGTATGGTTGGGGTTATGTGCTGTGGC GTAAATATCGTTTATTTTAAGTATATATGTACGCTAAGCCCATTTTGATT GCGTGCTGCATACTTCGCAATAATGTCGAGGCGTGCTTCGATAGTAATAA CCTGGAGCACTTTAAGGTTTTGAGGTCTGTTGCAACCGTGCAAGGAAAAC CTGCTGAACGATGCAATTCGCTGCAGATTCTCCGACCGTGGGGTAGAAGG ATTTGTCTCCAAGCGTGTGCTACAGTATGTAGTGCGGTGGTATCAGGGAT TTACTCCTGTGTGATTCAGCCGGGGTCCAAACGATAAGAAAAAGGAGAGG AGCATGCGTCAAAGGTGACAAAGCTTCCATCAGTACTACGGTGCATTCGG CTTCGGTTTCTCCGCGAGAGACATCAGCAGGTTCTATTGTAGAGTAGTCC AAAGTTGCACAATTTTGTTGTGATCACTCACGAAGTAGTAGGCTGGCATC AAGCAACAACACCGAAGTACTCGCCTGGGTAACATCGAAGCCCGATGTCA GCCACACAACGAGCCCTTCTCGGTCCACCTTGCCGCGATCAGCGGGATCG AGCCTCTCCGCCAGAAGTTTGGCGTCTTCGCTAGACACTCTAGCACCCAC CCTTTGGAGCTTCAAGTACCGGCGGGGGGGAGGAAGGGGACAACGGGAAT ATTGGCCGGTAGAAGACAGGGCATCGTGAATGTACCAGAAGCCCAACTTG CA back to topprotein sequence of EsuBft262_10a-0001 >EsuBft262_10 ID=EsuBft262_10|Name=EsuBft262_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=395bp
MELSDDERIGLVGFLSEHVNKNQLEMVEHKAWTCLKDDADHKILKGIRKL VFVRMDSPESMSQSNFNNLVNRRLGLPPGQQQQQGGSANAANSSTPNHAG SAGGGGGGPRGGPAQRANHSGAVNGNPNPASGGSGGGGGSGQGSAQGASR VGPSNGSPSPAGGGSRSRGGDSAQSPIHVSAVELEDTDEEEGNTMSEHDQ NDDNGEDSDGGDTDLEDTPAAKYEEHKSGFLQRRRWKVKEFEPPGEPPGN GYWVDPSSEDDGIVLFRMPKPGDLEQAKPRPAPTYITNNPYCTDAPKASF VKRVAMYGLLKVVAVSSQGGIWRAPDADIERVLRKDPRVPSDISAMPGDA YVKVMGEAFRRHQEERYEIQRQAEEECEDEVAAPQGKRSRVDINS back to topmRNA from alignment at Scaffold_647:477094..481794+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft262_10a-0001 ID=EsuBft262_10a-0001|Name=EsuBft262_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4701bp|location=Sequence derived from alignment at Scaffold_647:477094..481794+ (Ectocarpus subulatus male Bft15b) GGAAGAAGGCGGGAGAGACAGGGAGCTTCAAAGAACACAGACACAAATTC
GGGATCTACTGAATCCATGGAGCTCTCTGATGATGAGCGTATTGGTCTGG
TCGGGTTTCTGAGCGAGCACGTGAACAAGAACCAGCTCGAGATGGTGGAA
CACAAAGCCTGGACCTGCCTTAAAGACGATGCTGATCACAAGATTCTCAA
AGGCATCCGGAAGTTGGTGTTCGTGCGCATGGACAGGTGAATATAGCAAA
GCCAATGCTACGGTTGTAACTGGCATGTGCATGGGTGCCCTTGAACGTTC
CAGCGACACGCTCTACTCCCCTGTCCTCTCCCCCTCTCCCTTGAAAAAGC
GCGGGGGATTGCTGGCGTGCCCGTGTGTGCTTTTATTATTAGCATCGACC
GCGCTACCCGTGTGTGTGTGCAAGTTTTTTTTTTAAACAACAAAGTCAGA
GCTATAATACACTATACTGCAACAGCGTTTGTGTCGATTACTCCACCCCG
TGGTCGCACAGAAGCGTTCCTCTCCCTGAGGGCTCCAACCCACCCCTCCT
ACGGTGCTTTTGCCTTCGATTTTTGTGCGAGAAAGAGTGCAGCTCTCTCC
TCTGTGTGTACAAACGAAGTATCGCTTTCCACCCAGGCCAGGAACGGAAG
CGAGAGAAAACTTGCTGAGAGGTTTTCCCTCTTGACAAACACACGAGTAA
AACGGCTGAAGCGTTGTTGTTGACCCGTAGTCGCCCTCATCCATGGGATT
CGCACGTCATTCTAGTTCCCACGCGTGCCTGCCGTGTGTATATGTGCTGT
TTGGCCACCAAAGCTTGCCTACAGCAGCAGCAGCGCAACAACTACCTAAA
GCCAATGCAGGCGAGGGTACAAGCCGGAAGCCCCCCCCCCAACCAGAGGT
TCCTCCGGTAACGCAACGGCCTTCCTCCGCGCATGTGCCTACCAAAGGCC
CTGAATGGTATCACAAGGCGTCGTTTAATGTTTCACGAGCCGTGTCCAAC
AACTTCCTGCCTTGCGTCTTCGTCCCAGCCCCGAGAGCATGTCTCAGTCC
AACTTCAACAACCTAGTTAACAGACGCTTGGGGTTACCTCCGGGGCAGCA
ACAGCAACAGGTGCGCATGAAAGTGATCTCGTATGCAATGGTCGCCCTGA
AACGCAGCATTCTGGAAGATACGAGCAGAAGATACGAGCAGAAGATACGT
AGACCGATTGCTGCACCCGTGCCCACCCTGAACACCTGACTTGATCAGCC
GGTGTGGGGAGGGCACACATGTATCCGGGGGGTATCCCACCGCCCGGCGC
ACTCGACAGGATTTGTCCAATACGCACATCTGTGCAAGGCAGGATGTGAC
AAGTACGGCCTTTGTGTGTGCTCTTCTCAGCCTCTGCTCTGGTGTTGTTT
GGTGTGTGGACCTGGTGTGTCGGCGCCATGTGTCCCTTGTTTCACGTAAG
ACCTTCAAATCGTGATCCCTCCTGTTTACGTCGGTGTGATACAACCGGGT
TGTTACGGCAGTGGCGGGAAAGGTTTCGTCCAATGTTGAAGCAGCCGTCC
CCGCGACTTTCCTCGTTTCTCCTTCTGAGCCGTCGAGCTTGGGTTCGCTT
TGAACAACAGACTCGAAGCTAAAGCTGACCTCTGTCATGGTGTCTTTCTC
CTCAGGGTGGTTCTGCCAATGCAGCGAATAGCAGCACTCCCAACCATGCG
GGTAGTGCCGGCGGGGGCGGTGGCGGACCCAGAGGAGGCCCTGCTCAAAG
GGCCAACCATGTGAGGACGCCATATTGCGCCTTCTTGCCTGGTACACAGC
AGAGCGTGCATGCTGTCAGCATCCACCAGCATCTAGGACTTGGCAGCCCG
AATCAAAACCAGCCGCGACTCCTGAACATGCGTTTTGGTTCGTGCCCCAA
ACTCCGACCTTTGCTTGCCTGCTTAGAGTGGCGCCGTAAACGGTAACCCC
AACCCTGCCAGTGGCGGTTCCGGGGGCGGAGGTGGATCTGGACAAGGCTC
TGCTCAAGGGGCCAGCCGCGTGAGCAAAGCGTTGAACCTGCCGCGAGCGT
GGTACCGTAGAGTACTTCCCCTGTCTTGTTTTTTCCCTTCTGCAAAACGT
GGCTGCCGCGCGCGGTACGAGTTGCTCGTCCACCCGGAACAAAACCAGCT
GCACCTTTTCACCATGGTCCCTTTTCCGCTCTCAATGCTGAGCTTCGTTT
CCCCGGCTAAAATGATGCCGTCGCAGGTTGGCCCTTCTAACGGTAGCCCC
AGCCCTGCGGGTGGTGGTTCCCGGAGTCGCGGAGGCGATTCTGCTCAATC
GCCCATCCATGTGAGCACAGGGTTTCCGCCCCCGCGCCTGGCCTTTTTCG
TGCGTGTTTTAACGGTGCAACAGGCCCACGCGGTTGTCGTTCGGCGACCC
GTCTGAAAAAATAGTTTAAAAGAGCGGTTTTCTAGGGGCTACCGGTGGGC
GCCTAGAATGGACCGGACAGCCCGCGTGTTAGCCCCTTTCGCTCCGTACT
GAACCCTTTTCCTTGTTGAGACGAGATGTCAGAGACAAGGTCACCGCTCG
TGGAAAAATACAAAGACGTGCGCGGAGCGGCTTGTATATATTTGGACCAC
ACGCCCCGTAGATCACCCGAAACTTCACTGCACACTAGGGTGAAAGCAGC
AGGTGGTACGAATGAAGCGAGCGACATTTGATCGCTGTCAAACCCATTAT
TTTGTTGGCGACTTGCTGGTTAACGTCTGCCTTTGTTTGTTGTGTGCAGG
TGTCTGCGGTAGAGTTAGAAGACACCGACGAAGAAGAAGGAAACACCATG
TCTGAGCACGACCAGAACGACGACAACGGGGAAGATTCCGACGGGGGGGA
TACCGACCTCGAGGATACCCCCGCGGCGAAATATGAAGAGCACAAATCCG
GCTTCCTTCAGCGCCGTAGATGGAAGGTGAAGGAGTTCGAGCCTCCGGGA
GAGCCGCCCGGGAACGGCTACTGGGTCGATCCAAGTAGCGAGGATGACGG
AATAGTGCTGTTTCGGATGCCGAAACCGGGCGACTTGGAGCAAGCGAAAC
CCCGACCCGCGCCGACCTACATCACCAATAACCCTTACTGCACGGATGCC
CCGAAGGCGTCGTTCGTTAAGAGGGTCGCGATGTACGGCCTCTTAAAAGT
CGTGGCTGTTTCTTCCCAGGGCGGAATTTGGCGGGCTCCCGATGCAGACA
TCGAGAGGGTCCTGAGAAAGGACCCTCGCGTTCCATCCGATATATCTGCC
ATGCCTGGTGATGCATACGTCAAGGTCATGGGGGAGGCTTTCCGTCGCCA
CCAAGAAGAAAGATATGAGATCCAAAGGCAGGCTGAAGAAGAGTGCGAGG
ATGAAGTCGCTGCCCCACAGGGGAAGCGCAGTCGGGTAGATATCAACTCT
TGATTTTGCAGGGCACGGTGCACGACCGACCGTAGACCGCGTGCAACCCC
ATGGATTTTGGTTTGGTTCAGGTCTCCAGGCCATGAATTTCGTTTTGGGG
GAGGAATCTGTGCCGGACTAAGTATTGAGTTTTTTTAGCCGGACCCGCCG
TCGAGTCTCATTTAGCTATGATATGTAGGTCGTGTTTTCACAGTTGATTC
CTGAGCATGGTAGCAACCGGGAGTTACATCCCTGCGGCCTTGCCCGAGCA
CTGGTATTTTGTTGCACACCACCAGCGAGCGTACGTAAGTCTTGTGGGCT
TGCGTGTTTGGTTGAAAGGGCGCAAGATGCCGCAGCTGATCTCTTGTGTG
TCGTGTGAAGAGCTAGTTTATTGTTGGCTGCCAAGCCAGTACTCAAGCCA
CCCACAACAAACTACGACGACATTTGACTTTGCCAAGTAACTTCCGCAAC
ATTCCCCGCCGTGGCACAGCCACCGACAGACGTAGGATCACCTGGGTGCT
TGCTGAATGTGCCACAGTGGCGGCTCGTCGGGAGGGGTGGTTGCCGCGTG
CGTAGCGGACTGAAAAGCGCTTCGTATGGTTGGGGTTATGTGCTGTGGCG
TAAATATCGTTTATTTTAAGTATATATGTACGCTAAGCCCATTTTGATTG
CGTGCTGCATACTTCGCAATAATGTCGAGGCGTGCTTCGATAGTAATAAC
CTGGAGCACTTTAAGGTTTTGAGGTCTGTTGCAACCGTGCAAGGAAAACC
TGCTGAACGATGCAATTCGCTGCAGATTCTCCGACCGTGGGGTAGAAGGA
TTTGTCTCCAAGCGTGTGCTACAGTATGTAGTGCGGTGGTATCAGGGATT
TACTCCTGTGTGATTCAGCCGGGGTCCAAACGATAAGAAAAAGGAGAGGA
GCATGCGTCAAAGGTGACAAAGCTTCCATCAGTACTACGGTGCATTCGGC
TTCGGTTTCTCCGCGAGAGACATCAGCAGGTTCTATTGTAGAGTAGTCCA
AAGTTGCACAATTTTGTTGTGATCACTCACGAAGTAGTAGGCTGGCATCA
AGCAACAACACCGAAGTACTCGCCTGGGTAACATCGAAGCCCGATGTCAG
CCACACAACGAGCCCTTCTCGGTCCACCTTGCCGCGATCAGCGGGATCGA
GCCTCTCCGCCAGAAGTTTGGCGTCTTCGCTAGACACTCTAGCACCCACC
CTTTGGAGCTTCAAGTACCGGCGGGGGGGAGGAAGGGGACAACGGGAATA
TTGGCCGGTAGAAGACAGGGCATCGTGAATGTACCAGAAGCCCAACTTGC
A back to topCoding sequence (CDS) from alignment at Scaffold_647:477094..481794+ >EsuBft262_10a-0001 ID=EsuBft262_10a-0001|Name=EsuBft262_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1188bp|location=Sequence derived from alignment at Scaffold_647:477094..481794+ (Ectocarpus subulatus male Bft15b) ATGGAGCTCTCTGATGATGAGCGTATTGGTCTGGTCGGGTTTCTGAGCGA GCACGTGAACAAGAACCAGCTCGAGATGGTGGAACACAAAGCCTGGACCT GCCTTAAAGACGATGCTGATCACAAGATTCTCAAAGGCATCCGGAAGTTG GTGTTCGTGCGCATGGACAGCCCCGAGAGCATGTCTCAGTCCAACTTCAA CAACCTAGTTAACAGACGCTTGGGGTTACCTCCGGGGCAGCAACAGCAAC AGGGTGGTTCTGCCAATGCAGCGAATAGCAGCACTCCCAACCATGCGGGT AGTGCCGGCGGGGGCGGTGGCGGACCCAGAGGAGGCCCTGCTCAAAGGGC CAACCATAGTGGCGCCGTAAACGGTAACCCCAACCCTGCCAGTGGCGGTT CCGGGGGCGGAGGTGGATCTGGACAAGGCTCTGCTCAAGGGGCCAGCCGC GTTGGCCCTTCTAACGGTAGCCCCAGCCCTGCGGGTGGTGGTTCCCGGAG TCGCGGAGGCGATTCTGCTCAATCGCCCATCCATGTGTCTGCGGTAGAGT TAGAAGACACCGACGAAGAAGAAGGAAACACCATGTCTGAGCACGACCAG AACGACGACAACGGGGAAGATTCCGACGGGGGGGATACCGACCTCGAGGA TACCCCCGCGGCGAAATATGAAGAGCACAAATCCGGCTTCCTTCAGCGCC GTAGATGGAAGGTGAAGGAGTTCGAGCCTCCGGGAGAGCCGCCCGGGAAC GGCTACTGGGTCGATCCAAGTAGCGAGGATGACGGAATAGTGCTGTTTCG GATGCCGAAACCGGGCGACTTGGAGCAAGCGAAACCCCGACCCGCGCCGA CCTACATCACCAATAACCCTTACTGCACGGATGCCCCGAAGGCGTCGTTC GTTAAGAGGGTCGCGATGTACGGCCTCTTAAAAGTCGTGGCTGTTTCTTC CCAGGGCGGAATTTGGCGGGCTCCCGATGCAGACATCGAGAGGGTCCTGA GAAAGGACCCTCGCGTTCCATCCGATATATCTGCCATGCCTGGTGATGCA TACGTCAAGGTCATGGGGGAGGCTTTCCGTCGCCACCAAGAAGAAAGATA TGAGATCCAAAGGCAGGCTGAAGAAGAGTGCGAGGATGAAGTCGCTGCCC CACAGGGGAAGCGCAGTCGGGTAGATATCAACTCTTGA back to top
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