EsuBft262_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft262_10a-0001
Unique NameEsuBft262_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_647contigScaffold_647:477094..481794 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft262_10
Ownerapollo_admin@sb-roscoff.fr
Nb exon6
Length255
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_002250.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft262_10aEsuBft262_10aEctocarpus subulatus male Bft15bgeneScaffold_647 477094..481794 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft262_10a-0001EsuBft262_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_647 477160..480496 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft262_10a-0001-exonagat-exon-49285Ectocarpus subulatus male Bft15bexonScaffold_647 477094..477329 +
EsuBft262_10a-0001-exonEsuBft262_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_647 478122..478203 +
EsuBft262_10a-0001-exonagat-exon-49286Ectocarpus subulatus male Bft15bexonScaffold_647 478749..478853 +
EsuBft262_10a-0001-exonagat-exon-49284Ectocarpus subulatus male Bft15bexonScaffold_647 479020..479112 +
EsuBft262_10a-0001-exonagat-exon-49287Ectocarpus subulatus male Bft15bexonScaffold_647 479320..479403 +
EsuBft262_10a-0001-exonagat-exon-49283Ectocarpus subulatus male Bft15bexonScaffold_647 479843..481794 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft262_10a-0001-exonagat-five_prime_utr-6790Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_647 477094..477159 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft262_10a-0001-cdsEsuBft262_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_647 477160..477329 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft262_10a-0001-exonagat-three_prime_utr-10602Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_647 480497..481794 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft262_10a-0001 ID=EsuBft262_10a-0001|Name=EsuBft262_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2552bp|location=Sequence derived from alignment at Scaffold_647:477094..481794+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGAAGAAGGCGGGAGAGACAGGGAGCTTCAAAGAACACAGACACAAATTC
GGGATCTACTGAATCCATGGAGCTCTCTGATGATGAGCGTATTGGTCTGG
TCGGGTTTCTGAGCGAGCACGTGAACAAGAACCAGCTCGAGATGGTGGAA
CACAAAGCCTGGACCTGCCTTAAAGACGATGCTGATCACAAGATTCTCAA
AGGCATCCGGAAGTTGGTGTTCGTGCGCATGGACAGCCCCGAGAGCATGT
CTCAGTCCAACTTCAACAACCTAGTTAACAGACGCTTGGGGTTACCTCCG
GGGCAGCAACAGCAACAGGGTGGTTCTGCCAATGCAGCGAATAGCAGCAC
TCCCAACCATGCGGGTAGTGCCGGCGGGGGCGGTGGCGGACCCAGAGGAG
GCCCTGCTCAAAGGGCCAACCATAGTGGCGCCGTAAACGGTAACCCCAAC
CCTGCCAGTGGCGGTTCCGGGGGCGGAGGTGGATCTGGACAAGGCTCTGC
TCAAGGGGCCAGCCGCGTTGGCCCTTCTAACGGTAGCCCCAGCCCTGCGG
GTGGTGGTTCCCGGAGTCGCGGAGGCGATTCTGCTCAATCGCCCATCCAT
GTGTCTGCGGTAGAGTTAGAAGACACCGACGAAGAAGAAGGAAACACCAT
GTCTGAGCACGACCAGAACGACGACAACGGGGAAGATTCCGACGGGGGGG
ATACCGACCTCGAGGATACCCCCGCGGCGAAATATGAAGAGCACAAATCC
GGCTTCCTTCAGCGCCGTAGATGGAAGGTGAAGGAGTTCGAGCCTCCGGG
AGAGCCGCCCGGGAACGGCTACTGGGTCGATCCAAGTAGCGAGGATGACG
GAATAGTGCTGTTTCGGATGCCGAAACCGGGCGACTTGGAGCAAGCGAAA
CCCCGACCCGCGCCGACCTACATCACCAATAACCCTTACTGCACGGATGC
CCCGAAGGCGTCGTTCGTTAAGAGGGTCGCGATGTACGGCCTCTTAAAAG
TCGTGGCTGTTTCTTCCCAGGGCGGAATTTGGCGGGCTCCCGATGCAGAC
ATCGAGAGGGTCCTGAGAAAGGACCCTCGCGTTCCATCCGATATATCTGC
CATGCCTGGTGATGCATACGTCAAGGTCATGGGGGAGGCTTTCCGTCGCC
ACCAAGAAGAAAGATATGAGATCCAAAGGCAGGCTGAAGAAGAGTGCGAG
GATGAAGTCGCTGCCCCACAGGGGAAGCGCAGTCGGGTAGATATCAACTC
TTGATTTTGCAGGGCACGGTGCACGACCGACCGTAGACCGCGTGCAACCC
CATGGATTTTGGTTTGGTTCAGGTCTCCAGGCCATGAATTTCGTTTTGGG
GGAGGAATCTGTGCCGGACTAAGTATTGAGTTTTTTTAGCCGGACCCGCC
GTCGAGTCTCATTTAGCTATGATATGTAGGTCGTGTTTTCACAGTTGATT
CCTGAGCATGGTAGCAACCGGGAGTTACATCCCTGCGGCCTTGCCCGAGC
ACTGGTATTTTGTTGCACACCACCAGCGAGCGTACGTAAGTCTTGTGGGC
TTGCGTGTTTGGTTGAAAGGGCGCAAGATGCCGCAGCTGATCTCTTGTGT
GTCGTGTGAAGAGCTAGTTTATTGTTGGCTGCCAAGCCAGTACTCAAGCC
ACCCACAACAAACTACGACGACATTTGACTTTGCCAAGTAACTTCCGCAA
CATTCCCCGCCGTGGCACAGCCACCGACAGACGTAGGATCACCTGGGTGC
TTGCTGAATGTGCCACAGTGGCGGCTCGTCGGGAGGGGTGGTTGCCGCGT
GCGTAGCGGACTGAAAAGCGCTTCGTATGGTTGGGGTTATGTGCTGTGGC
GTAAATATCGTTTATTTTAAGTATATATGTACGCTAAGCCCATTTTGATT
GCGTGCTGCATACTTCGCAATAATGTCGAGGCGTGCTTCGATAGTAATAA
CCTGGAGCACTTTAAGGTTTTGAGGTCTGTTGCAACCGTGCAAGGAAAAC
CTGCTGAACGATGCAATTCGCTGCAGATTCTCCGACCGTGGGGTAGAAGG
ATTTGTCTCCAAGCGTGTGCTACAGTATGTAGTGCGGTGGTATCAGGGAT
TTACTCCTGTGTGATTCAGCCGGGGTCCAAACGATAAGAAAAAGGAGAGG
AGCATGCGTCAAAGGTGACAAAGCTTCCATCAGTACTACGGTGCATTCGG
CTTCGGTTTCTCCGCGAGAGACATCAGCAGGTTCTATTGTAGAGTAGTCC
AAAGTTGCACAATTTTGTTGTGATCACTCACGAAGTAGTAGGCTGGCATC
AAGCAACAACACCGAAGTACTCGCCTGGGTAACATCGAAGCCCGATGTCA
GCCACACAACGAGCCCTTCTCGGTCCACCTTGCCGCGATCAGCGGGATCG
AGCCTCTCCGCCAGAAGTTTGGCGTCTTCGCTAGACACTCTAGCACCCAC
CCTTTGGAGCTTCAAGTACCGGCGGGGGGGAGGAAGGGGACAACGGGAAT
ATTGGCCGGTAGAAGACAGGGCATCGTGAATGTACCAGAAGCCCAACTTG
CA
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protein sequence of EsuBft262_10a-0001

>EsuBft262_10 ID=EsuBft262_10|Name=EsuBft262_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=395bp
MELSDDERIGLVGFLSEHVNKNQLEMVEHKAWTCLKDDADHKILKGIRKL
VFVRMDSPESMSQSNFNNLVNRRLGLPPGQQQQQGGSANAANSSTPNHAG
SAGGGGGGPRGGPAQRANHSGAVNGNPNPASGGSGGGGGSGQGSAQGASR
VGPSNGSPSPAGGGSRSRGGDSAQSPIHVSAVELEDTDEEEGNTMSEHDQ
NDDNGEDSDGGDTDLEDTPAAKYEEHKSGFLQRRRWKVKEFEPPGEPPGN
GYWVDPSSEDDGIVLFRMPKPGDLEQAKPRPAPTYITNNPYCTDAPKASF
VKRVAMYGLLKVVAVSSQGGIWRAPDADIERVLRKDPRVPSDISAMPGDA
YVKVMGEAFRRHQEERYEIQRQAEEECEDEVAAPQGKRSRVDINS
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mRNA from alignment at Scaffold_647:477094..481794+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft262_10a-0001 ID=EsuBft262_10a-0001|Name=EsuBft262_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4701bp|location=Sequence derived from alignment at Scaffold_647:477094..481794+ (Ectocarpus subulatus male Bft15b)
GGAAGAAGGCGGGAGAGACAGGGAGCTTCAAAGAACACAGACACAAATTC GGGATCTACTGAATCCATGGAGCTCTCTGATGATGAGCGTATTGGTCTGG TCGGGTTTCTGAGCGAGCACGTGAACAAGAACCAGCTCGAGATGGTGGAA CACAAAGCCTGGACCTGCCTTAAAGACGATGCTGATCACAAGATTCTCAA AGGCATCCGGAAGTTGGTGTTCGTGCGCATGGACAGGTGAATATAGCAAA GCCAATGCTACGGTTGTAACTGGCATGTGCATGGGTGCCCTTGAACGTTC CAGCGACACGCTCTACTCCCCTGTCCTCTCCCCCTCTCCCTTGAAAAAGC GCGGGGGATTGCTGGCGTGCCCGTGTGTGCTTTTATTATTAGCATCGACC GCGCTACCCGTGTGTGTGTGCAAGTTTTTTTTTTAAACAACAAAGTCAGA GCTATAATACACTATACTGCAACAGCGTTTGTGTCGATTACTCCACCCCG TGGTCGCACAGAAGCGTTCCTCTCCCTGAGGGCTCCAACCCACCCCTCCT ACGGTGCTTTTGCCTTCGATTTTTGTGCGAGAAAGAGTGCAGCTCTCTCC TCTGTGTGTACAAACGAAGTATCGCTTTCCACCCAGGCCAGGAACGGAAG CGAGAGAAAACTTGCTGAGAGGTTTTCCCTCTTGACAAACACACGAGTAA AACGGCTGAAGCGTTGTTGTTGACCCGTAGTCGCCCTCATCCATGGGATT CGCACGTCATTCTAGTTCCCACGCGTGCCTGCCGTGTGTATATGTGCTGT TTGGCCACCAAAGCTTGCCTACAGCAGCAGCAGCGCAACAACTACCTAAA GCCAATGCAGGCGAGGGTACAAGCCGGAAGCCCCCCCCCCAACCAGAGGT TCCTCCGGTAACGCAACGGCCTTCCTCCGCGCATGTGCCTACCAAAGGCC CTGAATGGTATCACAAGGCGTCGTTTAATGTTTCACGAGCCGTGTCCAAC AACTTCCTGCCTTGCGTCTTCGTCCCAGCCCCGAGAGCATGTCTCAGTCC AACTTCAACAACCTAGTTAACAGACGCTTGGGGTTACCTCCGGGGCAGCA ACAGCAACAGGTGCGCATGAAAGTGATCTCGTATGCAATGGTCGCCCTGA AACGCAGCATTCTGGAAGATACGAGCAGAAGATACGAGCAGAAGATACGT AGACCGATTGCTGCACCCGTGCCCACCCTGAACACCTGACTTGATCAGCC GGTGTGGGGAGGGCACACATGTATCCGGGGGGTATCCCACCGCCCGGCGC ACTCGACAGGATTTGTCCAATACGCACATCTGTGCAAGGCAGGATGTGAC AAGTACGGCCTTTGTGTGTGCTCTTCTCAGCCTCTGCTCTGGTGTTGTTT GGTGTGTGGACCTGGTGTGTCGGCGCCATGTGTCCCTTGTTTCACGTAAG ACCTTCAAATCGTGATCCCTCCTGTTTACGTCGGTGTGATACAACCGGGT TGTTACGGCAGTGGCGGGAAAGGTTTCGTCCAATGTTGAAGCAGCCGTCC CCGCGACTTTCCTCGTTTCTCCTTCTGAGCCGTCGAGCTTGGGTTCGCTT TGAACAACAGACTCGAAGCTAAAGCTGACCTCTGTCATGGTGTCTTTCTC CTCAGGGTGGTTCTGCCAATGCAGCGAATAGCAGCACTCCCAACCATGCG GGTAGTGCCGGCGGGGGCGGTGGCGGACCCAGAGGAGGCCCTGCTCAAAG GGCCAACCATGTGAGGACGCCATATTGCGCCTTCTTGCCTGGTACACAGC AGAGCGTGCATGCTGTCAGCATCCACCAGCATCTAGGACTTGGCAGCCCG AATCAAAACCAGCCGCGACTCCTGAACATGCGTTTTGGTTCGTGCCCCAA ACTCCGACCTTTGCTTGCCTGCTTAGAGTGGCGCCGTAAACGGTAACCCC AACCCTGCCAGTGGCGGTTCCGGGGGCGGAGGTGGATCTGGACAAGGCTC TGCTCAAGGGGCCAGCCGCGTGAGCAAAGCGTTGAACCTGCCGCGAGCGT GGTACCGTAGAGTACTTCCCCTGTCTTGTTTTTTCCCTTCTGCAAAACGT GGCTGCCGCGCGCGGTACGAGTTGCTCGTCCACCCGGAACAAAACCAGCT GCACCTTTTCACCATGGTCCCTTTTCCGCTCTCAATGCTGAGCTTCGTTT CCCCGGCTAAAATGATGCCGTCGCAGGTTGGCCCTTCTAACGGTAGCCCC AGCCCTGCGGGTGGTGGTTCCCGGAGTCGCGGAGGCGATTCTGCTCAATC GCCCATCCATGTGAGCACAGGGTTTCCGCCCCCGCGCCTGGCCTTTTTCG TGCGTGTTTTAACGGTGCAACAGGCCCACGCGGTTGTCGTTCGGCGACCC GTCTGAAAAAATAGTTTAAAAGAGCGGTTTTCTAGGGGCTACCGGTGGGC GCCTAGAATGGACCGGACAGCCCGCGTGTTAGCCCCTTTCGCTCCGTACT GAACCCTTTTCCTTGTTGAGACGAGATGTCAGAGACAAGGTCACCGCTCG TGGAAAAATACAAAGACGTGCGCGGAGCGGCTTGTATATATTTGGACCAC ACGCCCCGTAGATCACCCGAAACTTCACTGCACACTAGGGTGAAAGCAGC AGGTGGTACGAATGAAGCGAGCGACATTTGATCGCTGTCAAACCCATTAT TTTGTTGGCGACTTGCTGGTTAACGTCTGCCTTTGTTTGTTGTGTGCAGG TGTCTGCGGTAGAGTTAGAAGACACCGACGAAGAAGAAGGAAACACCATG TCTGAGCACGACCAGAACGACGACAACGGGGAAGATTCCGACGGGGGGGA TACCGACCTCGAGGATACCCCCGCGGCGAAATATGAAGAGCACAAATCCG GCTTCCTTCAGCGCCGTAGATGGAAGGTGAAGGAGTTCGAGCCTCCGGGA GAGCCGCCCGGGAACGGCTACTGGGTCGATCCAAGTAGCGAGGATGACGG AATAGTGCTGTTTCGGATGCCGAAACCGGGCGACTTGGAGCAAGCGAAAC CCCGACCCGCGCCGACCTACATCACCAATAACCCTTACTGCACGGATGCC CCGAAGGCGTCGTTCGTTAAGAGGGTCGCGATGTACGGCCTCTTAAAAGT CGTGGCTGTTTCTTCCCAGGGCGGAATTTGGCGGGCTCCCGATGCAGACA TCGAGAGGGTCCTGAGAAAGGACCCTCGCGTTCCATCCGATATATCTGCC ATGCCTGGTGATGCATACGTCAAGGTCATGGGGGAGGCTTTCCGTCGCCA CCAAGAAGAAAGATATGAGATCCAAAGGCAGGCTGAAGAAGAGTGCGAGG ATGAAGTCGCTGCCCCACAGGGGAAGCGCAGTCGGGTAGATATCAACTCT TGATTTTGCAGGGCACGGTGCACGACCGACCGTAGACCGCGTGCAACCCC ATGGATTTTGGTTTGGTTCAGGTCTCCAGGCCATGAATTTCGTTTTGGGG GAGGAATCTGTGCCGGACTAAGTATTGAGTTTTTTTAGCCGGACCCGCCG TCGAGTCTCATTTAGCTATGATATGTAGGTCGTGTTTTCACAGTTGATTC CTGAGCATGGTAGCAACCGGGAGTTACATCCCTGCGGCCTTGCCCGAGCA CTGGTATTTTGTTGCACACCACCAGCGAGCGTACGTAAGTCTTGTGGGCT TGCGTGTTTGGTTGAAAGGGCGCAAGATGCCGCAGCTGATCTCTTGTGTG TCGTGTGAAGAGCTAGTTTATTGTTGGCTGCCAAGCCAGTACTCAAGCCA CCCACAACAAACTACGACGACATTTGACTTTGCCAAGTAACTTCCGCAAC ATTCCCCGCCGTGGCACAGCCACCGACAGACGTAGGATCACCTGGGTGCT TGCTGAATGTGCCACAGTGGCGGCTCGTCGGGAGGGGTGGTTGCCGCGTG CGTAGCGGACTGAAAAGCGCTTCGTATGGTTGGGGTTATGTGCTGTGGCG TAAATATCGTTTATTTTAAGTATATATGTACGCTAAGCCCATTTTGATTG CGTGCTGCATACTTCGCAATAATGTCGAGGCGTGCTTCGATAGTAATAAC CTGGAGCACTTTAAGGTTTTGAGGTCTGTTGCAACCGTGCAAGGAAAACC TGCTGAACGATGCAATTCGCTGCAGATTCTCCGACCGTGGGGTAGAAGGA TTTGTCTCCAAGCGTGTGCTACAGTATGTAGTGCGGTGGTATCAGGGATT TACTCCTGTGTGATTCAGCCGGGGTCCAAACGATAAGAAAAAGGAGAGGA GCATGCGTCAAAGGTGACAAAGCTTCCATCAGTACTACGGTGCATTCGGC TTCGGTTTCTCCGCGAGAGACATCAGCAGGTTCTATTGTAGAGTAGTCCA AAGTTGCACAATTTTGTTGTGATCACTCACGAAGTAGTAGGCTGGCATCA AGCAACAACACCGAAGTACTCGCCTGGGTAACATCGAAGCCCGATGTCAG CCACACAACGAGCCCTTCTCGGTCCACCTTGCCGCGATCAGCGGGATCGA GCCTCTCCGCCAGAAGTTTGGCGTCTTCGCTAGACACTCTAGCACCCACC CTTTGGAGCTTCAAGTACCGGCGGGGGGGAGGAAGGGGACAACGGGAATA TTGGCCGGTAGAAGACAGGGCATCGTGAATGTACCAGAAGCCCAACTTGC A
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Coding sequence (CDS) from alignment at Scaffold_647:477094..481794+

>EsuBft262_10a-0001 ID=EsuBft262_10a-0001|Name=EsuBft262_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1188bp|location=Sequence derived from alignment at Scaffold_647:477094..481794+ (Ectocarpus subulatus male Bft15b)
ATGGAGCTCTCTGATGATGAGCGTATTGGTCTGGTCGGGTTTCTGAGCGA
GCACGTGAACAAGAACCAGCTCGAGATGGTGGAACACAAAGCCTGGACCT
GCCTTAAAGACGATGCTGATCACAAGATTCTCAAAGGCATCCGGAAGTTG
GTGTTCGTGCGCATGGACAGCCCCGAGAGCATGTCTCAGTCCAACTTCAA
CAACCTAGTTAACAGACGCTTGGGGTTACCTCCGGGGCAGCAACAGCAAC
AGGGTGGTTCTGCCAATGCAGCGAATAGCAGCACTCCCAACCATGCGGGT
AGTGCCGGCGGGGGCGGTGGCGGACCCAGAGGAGGCCCTGCTCAAAGGGC
CAACCATAGTGGCGCCGTAAACGGTAACCCCAACCCTGCCAGTGGCGGTT
CCGGGGGCGGAGGTGGATCTGGACAAGGCTCTGCTCAAGGGGCCAGCCGC
GTTGGCCCTTCTAACGGTAGCCCCAGCCCTGCGGGTGGTGGTTCCCGGAG
TCGCGGAGGCGATTCTGCTCAATCGCCCATCCATGTGTCTGCGGTAGAGT
TAGAAGACACCGACGAAGAAGAAGGAAACACCATGTCTGAGCACGACCAG
AACGACGACAACGGGGAAGATTCCGACGGGGGGGATACCGACCTCGAGGA
TACCCCCGCGGCGAAATATGAAGAGCACAAATCCGGCTTCCTTCAGCGCC
GTAGATGGAAGGTGAAGGAGTTCGAGCCTCCGGGAGAGCCGCCCGGGAAC
GGCTACTGGGTCGATCCAAGTAGCGAGGATGACGGAATAGTGCTGTTTCG
GATGCCGAAACCGGGCGACTTGGAGCAAGCGAAACCCCGACCCGCGCCGA
CCTACATCACCAATAACCCTTACTGCACGGATGCCCCGAAGGCGTCGTTC
GTTAAGAGGGTCGCGATGTACGGCCTCTTAAAAGTCGTGGCTGTTTCTTC
CCAGGGCGGAATTTGGCGGGCTCCCGATGCAGACATCGAGAGGGTCCTGA
GAAAGGACCCTCGCGTTCCATCCGATATATCTGCCATGCCTGGTGATGCA
TACGTCAAGGTCATGGGGGAGGCTTTCCGTCGCCACCAAGAAGAAAGATA
TGAGATCCAAAGGCAGGCTGAAGAAGAGTGCGAGGATGAAGTCGCTGCCC
CACAGGGGAAGCGCAGTCGGGTAGATATCAACTCTTGA
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