EsuBft262_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
ProteomeId	EsuBft262_10
Owner	apollo_admin@sb-roscoff.fr
Nb exon	6
Length	255
Hectar predicted targeting category	other localisation
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-26_002250.1
Date last modified	2016-06-14
Date creation	2016-06-14

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_647:477094..481794+
coding sequence from alignment at Scaffold_647:477094..481794+

spliced messenger RNA

>EsuBft262_10a-0001 ID=EsuBft262_10a-0001|Name=EsuBft262_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2552bp|location=Sequence derived from alignment at Scaffold_647:477094..481794+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGAAGAAGGCGGGAGAGACAGGGAGCTTCAAAGAACACAGACACAAATTC
GGGATCTACTGAATCCATGGAGCTCTCTGATGATGAGCGTATTGGTCTGG
TCGGGTTTCTGAGCGAGCACGTGAACAAGAACCAGCTCGAGATGGTGGAA
CACAAAGCCTGGACCTGCCTTAAAGACGATGCTGATCACAAGATTCTCAA
AGGCATCCGGAAGTTGGTGTTCGTGCGCATGGACAGCCCCGAGAGCATGT
CTCAGTCCAACTTCAACAACCTAGTTAACAGACGCTTGGGGTTACCTCCG
GGGCAGCAACAGCAACAGGGTGGTTCTGCCAATGCAGCGAATAGCAGCAC
TCCCAACCATGCGGGTAGTGCCGGCGGGGGCGGTGGCGGACCCAGAGGAG
GCCCTGCTCAAAGGGCCAACCATAGTGGCGCCGTAAACGGTAACCCCAAC
CCTGCCAGTGGCGGTTCCGGGGGCGGAGGTGGATCTGGACAAGGCTCTGC
TCAAGGGGCCAGCCGCGTTGGCCCTTCTAACGGTAGCCCCAGCCCTGCGG
GTGGTGGTTCCCGGAGTCGCGGAGGCGATTCTGCTCAATCGCCCATCCAT
GTGTCTGCGGTAGAGTTAGAAGACACCGACGAAGAAGAAGGAAACACCAT
GTCTGAGCACGACCAGAACGACGACAACGGGGAAGATTCCGACGGGGGGG
ATACCGACCTCGAGGATACCCCCGCGGCGAAATATGAAGAGCACAAATCC
GGCTTCCTTCAGCGCCGTAGATGGAAGGTGAAGGAGTTCGAGCCTCCGGG
AGAGCCGCCCGGGAACGGCTACTGGGTCGATCCAAGTAGCGAGGATGACG
GAATAGTGCTGTTTCGGATGCCGAAACCGGGCGACTTGGAGCAAGCGAAA
CCCCGACCCGCGCCGACCTACATCACCAATAACCCTTACTGCACGGATGC
CCCGAAGGCGTCGTTCGTTAAGAGGGTCGCGATGTACGGCCTCTTAAAAG
TCGTGGCTGTTTCTTCCCAGGGCGGAATTTGGCGGGCTCCCGATGCAGAC
ATCGAGAGGGTCCTGAGAAAGGACCCTCGCGTTCCATCCGATATATCTGC
CATGCCTGGTGATGCATACGTCAAGGTCATGGGGGAGGCTTTCCGTCGCC
ACCAAGAAGAAAGATATGAGATCCAAAGGCAGGCTGAAGAAGAGTGCGAG
GATGAAGTCGCTGCCCCACAGGGGAAGCGCAGTCGGGTAGATATCAACTC
TTGATTTTGCAGGGCACGGTGCACGACCGACCGTAGACCGCGTGCAACCC
CATGGATTTTGGTTTGGTTCAGGTCTCCAGGCCATGAATTTCGTTTTGGG
GGAGGAATCTGTGCCGGACTAAGTATTGAGTTTTTTTAGCCGGACCCGCC
GTCGAGTCTCATTTAGCTATGATATGTAGGTCGTGTTTTCACAGTTGATT
CCTGAGCATGGTAGCAACCGGGAGTTACATCCCTGCGGCCTTGCCCGAGC
ACTGGTATTTTGTTGCACACCACCAGCGAGCGTACGTAAGTCTTGTGGGC
TTGCGTGTTTGGTTGAAAGGGCGCAAGATGCCGCAGCTGATCTCTTGTGT
GTCGTGTGAAGAGCTAGTTTATTGTTGGCTGCCAAGCCAGTACTCAAGCC
ACCCACAACAAACTACGACGACATTTGACTTTGCCAAGTAACTTCCGCAA
CATTCCCCGCCGTGGCACAGCCACCGACAGACGTAGGATCACCTGGGTGC
TTGCTGAATGTGCCACAGTGGCGGCTCGTCGGGAGGGGTGGTTGCCGCGT
GCGTAGCGGACTGAAAAGCGCTTCGTATGGTTGGGGTTATGTGCTGTGGC
GTAAATATCGTTTATTTTAAGTATATATGTACGCTAAGCCCATTTTGATT
GCGTGCTGCATACTTCGCAATAATGTCGAGGCGTGCTTCGATAGTAATAA
CCTGGAGCACTTTAAGGTTTTGAGGTCTGTTGCAACCGTGCAAGGAAAAC
CTGCTGAACGATGCAATTCGCTGCAGATTCTCCGACCGTGGGGTAGAAGG
ATTTGTCTCCAAGCGTGTGCTACAGTATGTAGTGCGGTGGTATCAGGGAT
TTACTCCTGTGTGATTCAGCCGGGGTCCAAACGATAAGAAAAAGGAGAGG
AGCATGCGTCAAAGGTGACAAAGCTTCCATCAGTACTACGGTGCATTCGG
CTTCGGTTTCTCCGCGAGAGACATCAGCAGGTTCTATTGTAGAGTAGTCC
AAAGTTGCACAATTTTGTTGTGATCACTCACGAAGTAGTAGGCTGGCATC
AAGCAACAACACCGAAGTACTCGCCTGGGTAACATCGAAGCCCGATGTCA
GCCACACAACGAGCCCTTCTCGGTCCACCTTGCCGCGATCAGCGGGATCG
AGCCTCTCCGCCAGAAGTTTGGCGTCTTCGCTAGACACTCTAGCACCCAC
CCTTTGGAGCTTCAAGTACCGGCGGGGGGGAGGAAGGGGACAACGGGAAT
ATTGGCCGGTAGAAGACAGGGCATCGTGAATGTACCAGAAGCCCAACTTG
CA

protein sequence of EsuBft262_10a-0001

>EsuBft262_10 ID=EsuBft262_10|Name=EsuBft262_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=395bp
MELSDDERIGLVGFLSEHVNKNQLEMVEHKAWTCLKDDADHKILKGIRKL
VFVRMDSPESMSQSNFNNLVNRRLGLPPGQQQQQGGSANAANSSTPNHAG
SAGGGGGGPRGGPAQRANHSGAVNGNPNPASGGSGGGGGSGQGSAQGASR
VGPSNGSPSPAGGGSRSRGGDSAQSPIHVSAVELEDTDEEEGNTMSEHDQ
NDDNGEDSDGGDTDLEDTPAAKYEEHKSGFLQRRRWKVKEFEPPGEPPGN
GYWVDPSSEDDGIVLFRMPKPGDLEQAKPRPAPTYITNNPYCTDAPKASF
VKRVAMYGLLKVVAVSSQGGIWRAPDADIERVLRKDPRVPSDISAMPGDA
YVKVMGEAFRRHQEERYEIQRQAEEECEDEVAAPQGKRSRVDINS

mRNA from alignment at Scaffold_647:477094..481794+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft262_10a-0001 ID=EsuBft262_10a-0001|Name=EsuBft262_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4701bp|location=Sequence derived from alignment at Scaffold_647:477094..481794+ (Ectocarpus subulatus male Bft15b)
GGAAGAAGGCGGGAGAGACAGGGAGCTTCAAAGAACACAGACACAAATTC
GGGATCTACTGAATCCATGGAGCTCTCTGATGATGAGCGTATTGGTCTGG
TCGGGTTTCTGAGCGAGCACGTGAACAAGAACCAGCTCGAGATGGTGGAA
CACAAAGCCTGGACCTGCCTTAAAGACGATGCTGATCACAAGATTCTCAA
AGGCATCCGGAAGTTGGTGTTCGTGCGCATGGACAGGTGAATATAGCAAA
GCCAATGCTACGGTTGTAACTGGCATGTGCATGGGTGCCCTTGAACGTTC
CAGCGACACGCTCTACTCCCCTGTCCTCTCCCCCTCTCCCTTGAAAAAGC
GCGGGGGATTGCTGGCGTGCCCGTGTGTGCTTTTATTATTAGCATCGACC
GCGCTACCCGTGTGTGTGTGCAAGTTTTTTTTTTAAACAACAAAGTCAGA
GCTATAATACACTATACTGCAACAGCGTTTGTGTCGATTACTCCACCCCG
TGGTCGCACAGAAGCGTTCCTCTCCCTGAGGGCTCCAACCCACCCCTCCT
ACGGTGCTTTTGCCTTCGATTTTTGTGCGAGAAAGAGTGCAGCTCTCTCC
TCTGTGTGTACAAACGAAGTATCGCTTTCCACCCAGGCCAGGAACGGAAG
CGAGAGAAAACTTGCTGAGAGGTTTTCCCTCTTGACAAACACACGAGTAA
AACGGCTGAAGCGTTGTTGTTGACCCGTAGTCGCCCTCATCCATGGGATT
CGCACGTCATTCTAGTTCCCACGCGTGCCTGCCGTGTGTATATGTGCTGT
TTGGCCACCAAAGCTTGCCTACAGCAGCAGCAGCGCAACAACTACCTAAA
GCCAATGCAGGCGAGGGTACAAGCCGGAAGCCCCCCCCCCAACCAGAGGT
TCCTCCGGTAACGCAACGGCCTTCCTCCGCGCATGTGCCTACCAAAGGCC
CTGAATGGTATCACAAGGCGTCGTTTAATGTTTCACGAGCCGTGTCCAAC
AACTTCCTGCCTTGCGTCTTCGTCCCAGCCCCGAGAGCATGTCTCAGTCC
AACTTCAACAACCTAGTTAACAGACGCTTGGGGTTACCTCCGGGGCAGCA
ACAGCAACAGGTGCGCATGAAAGTGATCTCGTATGCAATGGTCGCCCTGA
AACGCAGCATTCTGGAAGATACGAGCAGAAGATACGAGCAGAAGATACGT
AGACCGATTGCTGCACCCGTGCCCACCCTGAACACCTGACTTGATCAGCC
GGTGTGGGGAGGGCACACATGTATCCGGGGGGTATCCCACCGCCCGGCGC
ACTCGACAGGATTTGTCCAATACGCACATCTGTGCAAGGCAGGATGTGAC
AAGTACGGCCTTTGTGTGTGCTCTTCTCAGCCTCTGCTCTGGTGTTGTTT
GGTGTGTGGACCTGGTGTGTCGGCGCCATGTGTCCCTTGTTTCACGTAAG
ACCTTCAAATCGTGATCCCTCCTGTTTACGTCGGTGTGATACAACCGGGT
TGTTACGGCAGTGGCGGGAAAGGTTTCGTCCAATGTTGAAGCAGCCGTCC
CCGCGACTTTCCTCGTTTCTCCTTCTGAGCCGTCGAGCTTGGGTTCGCTT
TGAACAACAGACTCGAAGCTAAAGCTGACCTCTGTCATGGTGTCTTTCTC
CTCAGGGTGGTTCTGCCAATGCAGCGAATAGCAGCACTCCCAACCATGCG
GGTAGTGCCGGCGGGGGCGGTGGCGGACCCAGAGGAGGCCCTGCTCAAAG
GGCCAACCATGTGAGGACGCCATATTGCGCCTTCTTGCCTGGTACACAGC
AGAGCGTGCATGCTGTCAGCATCCACCAGCATCTAGGACTTGGCAGCCCG
AATCAAAACCAGCCGCGACTCCTGAACATGCGTTTTGGTTCGTGCCCCAA
ACTCCGACCTTTGCTTGCCTGCTTAGAGTGGCGCCGTAAACGGTAACCCC
AACCCTGCCAGTGGCGGTTCCGGGGGCGGAGGTGGATCTGGACAAGGCTC
TGCTCAAGGGGCCAGCCGCGTGAGCAAAGCGTTGAACCTGCCGCGAGCGT
GGTACCGTAGAGTACTTCCCCTGTCTTGTTTTTTCCCTTCTGCAAAACGT
GGCTGCCGCGCGCGGTACGAGTTGCTCGTCCACCCGGAACAAAACCAGCT
GCACCTTTTCACCATGGTCCCTTTTCCGCTCTCAATGCTGAGCTTCGTTT
CCCCGGCTAAAATGATGCCGTCGCAGGTTGGCCCTTCTAACGGTAGCCCC
AGCCCTGCGGGTGGTGGTTCCCGGAGTCGCGGAGGCGATTCTGCTCAATC
GCCCATCCATGTGAGCACAGGGTTTCCGCCCCCGCGCCTGGCCTTTTTCG
TGCGTGTTTTAACGGTGCAACAGGCCCACGCGGTTGTCGTTCGGCGACCC
GTCTGAAAAAATAGTTTAAAAGAGCGGTTTTCTAGGGGCTACCGGTGGGC
GCCTAGAATGGACCGGACAGCCCGCGTGTTAGCCCCTTTCGCTCCGTACT
GAACCCTTTTCCTTGTTGAGACGAGATGTCAGAGACAAGGTCACCGCTCG
TGGAAAAATACAAAGACGTGCGCGGAGCGGCTTGTATATATTTGGACCAC
ACGCCCCGTAGATCACCCGAAACTTCACTGCACACTAGGGTGAAAGCAGC
AGGTGGTACGAATGAAGCGAGCGACATTTGATCGCTGTCAAACCCATTAT
TTTGTTGGCGACTTGCTGGTTAACGTCTGCCTTTGTTTGTTGTGTGCAGG
TGTCTGCGGTAGAGTTAGAAGACACCGACGAAGAAGAAGGAAACACCATG
TCTGAGCACGACCAGAACGACGACAACGGGGAAGATTCCGACGGGGGGGA
TACCGACCTCGAGGATACCCCCGCGGCGAAATATGAAGAGCACAAATCCG
GCTTCCTTCAGCGCCGTAGATGGAAGGTGAAGGAGTTCGAGCCTCCGGGA
GAGCCGCCCGGGAACGGCTACTGGGTCGATCCAAGTAGCGAGGATGACGG
AATAGTGCTGTTTCGGATGCCGAAACCGGGCGACTTGGAGCAAGCGAAAC
CCCGACCCGCGCCGACCTACATCACCAATAACCCTTACTGCACGGATGCC
CCGAAGGCGTCGTTCGTTAAGAGGGTCGCGATGTACGGCCTCTTAAAAGT
CGTGGCTGTTTCTTCCCAGGGCGGAATTTGGCGGGCTCCCGATGCAGACA
TCGAGAGGGTCCTGAGAAAGGACCCTCGCGTTCCATCCGATATATCTGCC
ATGCCTGGTGATGCATACGTCAAGGTCATGGGGGAGGCTTTCCGTCGCCA
CCAAGAAGAAAGATATGAGATCCAAAGGCAGGCTGAAGAAGAGTGCGAGG
ATGAAGTCGCTGCCCCACAGGGGAAGCGCAGTCGGGTAGATATCAACTCT
TGATTTTGCAGGGCACGGTGCACGACCGACCGTAGACCGCGTGCAACCCC
ATGGATTTTGGTTTGGTTCAGGTCTCCAGGCCATGAATTTCGTTTTGGGG
GAGGAATCTGTGCCGGACTAAGTATTGAGTTTTTTTAGCCGGACCCGCCG
TCGAGTCTCATTTAGCTATGATATGTAGGTCGTGTTTTCACAGTTGATTC
CTGAGCATGGTAGCAACCGGGAGTTACATCCCTGCGGCCTTGCCCGAGCA
CTGGTATTTTGTTGCACACCACCAGCGAGCGTACGTAAGTCTTGTGGGCT
TGCGTGTTTGGTTGAAAGGGCGCAAGATGCCGCAGCTGATCTCTTGTGTG
TCGTGTGAAGAGCTAGTTTATTGTTGGCTGCCAAGCCAGTACTCAAGCCA
CCCACAACAAACTACGACGACATTTGACTTTGCCAAGTAACTTCCGCAAC
ATTCCCCGCCGTGGCACAGCCACCGACAGACGTAGGATCACCTGGGTGCT
TGCTGAATGTGCCACAGTGGCGGCTCGTCGGGAGGGGTGGTTGCCGCGTG
CGTAGCGGACTGAAAAGCGCTTCGTATGGTTGGGGTTATGTGCTGTGGCG
TAAATATCGTTTATTTTAAGTATATATGTACGCTAAGCCCATTTTGATTG
CGTGCTGCATACTTCGCAATAATGTCGAGGCGTGCTTCGATAGTAATAAC
CTGGAGCACTTTAAGGTTTTGAGGTCTGTTGCAACCGTGCAAGGAAAACC
TGCTGAACGATGCAATTCGCTGCAGATTCTCCGACCGTGGGGTAGAAGGA
TTTGTCTCCAAGCGTGTGCTACAGTATGTAGTGCGGTGGTATCAGGGATT
TACTCCTGTGTGATTCAGCCGGGGTCCAAACGATAAGAAAAAGGAGAGGA
GCATGCGTCAAAGGTGACAAAGCTTCCATCAGTACTACGGTGCATTCGGC
TTCGGTTTCTCCGCGAGAGACATCAGCAGGTTCTATTGTAGAGTAGTCCA
AAGTTGCACAATTTTGTTGTGATCACTCACGAAGTAGTAGGCTGGCATCA
AGCAACAACACCGAAGTACTCGCCTGGGTAACATCGAAGCCCGATGTCAG
CCACACAACGAGCCCTTCTCGGTCCACCTTGCCGCGATCAGCGGGATCGA
GCCTCTCCGCCAGAAGTTTGGCGTCTTCGCTAGACACTCTAGCACCCACC
CTTTGGAGCTTCAAGTACCGGCGGGGGGGAGGAAGGGGACAACGGGAATA
TTGGCCGGTAGAAGACAGGGCATCGTGAATGTACCAGAAGCCCAACTTGC
A

Coding sequence (CDS) from alignment at Scaffold_647:477094..481794+

>EsuBft262_10a-0001 ID=EsuBft262_10a-0001|Name=EsuBft262_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1188bp|location=Sequence derived from alignment at Scaffold_647:477094..481794+ (Ectocarpus subulatus male Bft15b)
ATGGAGCTCTCTGATGATGAGCGTATTGGTCTGGTCGGGTTTCTGAGCGA
GCACGTGAACAAGAACCAGCTCGAGATGGTGGAACACAAAGCCTGGACCT
GCCTTAAAGACGATGCTGATCACAAGATTCTCAAAGGCATCCGGAAGTTG
GTGTTCGTGCGCATGGACAGCCCCGAGAGCATGTCTCAGTCCAACTTCAA
CAACCTAGTTAACAGACGCTTGGGGTTACCTCCGGGGCAGCAACAGCAAC
AGGGTGGTTCTGCCAATGCAGCGAATAGCAGCACTCCCAACCATGCGGGT
AGTGCCGGCGGGGGCGGTGGCGGACCCAGAGGAGGCCCTGCTCAAAGGGC
CAACCATAGTGGCGCCGTAAACGGTAACCCCAACCCTGCCAGTGGCGGTT
CCGGGGGCGGAGGTGGATCTGGACAAGGCTCTGCTCAAGGGGCCAGCCGC
GTTGGCCCTTCTAACGGTAGCCCCAGCCCTGCGGGTGGTGGTTCCCGGAG
TCGCGGAGGCGATTCTGCTCAATCGCCCATCCATGTGTCTGCGGTAGAGT
TAGAAGACACCGACGAAGAAGAAGGAAACACCATGTCTGAGCACGACCAG
AACGACGACAACGGGGAAGATTCCGACGGGGGGGATACCGACCTCGAGGA
TACCCCCGCGGCGAAATATGAAGAGCACAAATCCGGCTTCCTTCAGCGCC
GTAGATGGAAGGTGAAGGAGTTCGAGCCTCCGGGAGAGCCGCCCGGGAAC
GGCTACTGGGTCGATCCAAGTAGCGAGGATGACGGAATAGTGCTGTTTCG
GATGCCGAAACCGGGCGACTTGGAGCAAGCGAAACCCCGACCCGCGCCGA
CCTACATCACCAATAACCCTTACTGCACGGATGCCCCGAAGGCGTCGTTC
GTTAAGAGGGTCGCGATGTACGGCCTCTTAAAAGTCGTGGCTGTTTCTTC
CCAGGGCGGAATTTGGCGGGCTCCCGATGCAGACATCGAGAGGGTCCTGA
GAAAGGACCCTCGCGTTCCATCCGATATATCTGCCATGCCTGGTGATGCA
TACGTCAAGGTCATGGGGGAGGCTTTCCGTCGCCACCAAGAAGAAAGATA
TGAGATCCAAAGGCAGGCTGAAGAAGAGTGCGAGGATGAAGTCGCTGCCC
CACAGGGGAAGCGCAGTCGGGTAGATATCAACTCTTGA