EsuBft1510_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1510_4a-0001
Unique Name	EsuBft1510_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_350	contig	Scaffold_350:81236..84337 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FUH4
ProteomeId	EsuBft1510_4
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Max annot lvl	2880.D7FUH4\|-
Length	227
Hectar predicted targeting category	no signal peptide or anchor
Evalue	8.83e-17
EggNOG OGs	2EABQ@1\|root,2SGK3@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1510_4a	EsuBft1510_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_350 81236..84337 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1510_4a-0001	EsuBft1510_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_350 81236..81639 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1510_4a-0001-exon	agat-exon-84409	Ectocarpus subulatus male Bft15b	exon	Scaffold_350 81236..81279 +
EsuBft1510_4a-0001-exon	agat-exon-84408	Ectocarpus subulatus male Bft15b	exon	Scaffold_350 81513..83341 +
EsuBft1510_4a-0001-exon	EsuBft1510_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_350 83773..83872 +
EsuBft1510_4a-0001-exon	agat-exon-84410	Ectocarpus subulatus male Bft15b	exon	Scaffold_350 84038..84337 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1510_4a-0001-cds	EsuBft1510_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_350 81236..81279 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1510_4a-0001-exon	agat-three_prime_utr-4510	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_350 81640..83341 +
EsuBft1510_4a-0001-exon	agat-three_prime_utr-4511	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_350 83773..83872 +
EsuBft1510_4a-0001-exon	agat-three_prime_utr-4512	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_350 84038..84337 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_350:81236..84337+
coding sequence from alignment at Scaffold_350:81236..84337+

spliced messenger RNA

>EsuBft1510_4a-0001 ID=EsuBft1510_4a-0001|Name=EsuBft1510_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2273bp|location=Sequence derived from alignment at Scaffold_350:81236..84337+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGACGTGGCATATGGGTGTGATGCCTGTAGCTGAAGTCACGTACAC
GGCCATCAACGTCGCCATGGGGAACACAAGGGCTGCGCCGTACAGCTACT
GCGTCGACGCCCACGCTGGGTTGGATGCCGATATCGTGTCTTGGTCCTTC
GTGAGTGCCATAATCAAGTAGAATACGCTTCGGAGCTCTACCATGCCATC
TATCTATCGGACCATCTGTGCTTATTTCGGGATCCCACTTCTCGGCGGAC
TCATTAGCAATTCTGGCTGAGTGAGCGACCGGTCAACAACCGAAGACAAA
TTAATTCTTCAGCTGACTCGTCCGCCCCAAAGCTGCGCGTACGGACGAGA
GGATACATGGCACGCCCACGTCTCCTGGCCATCACAACGCGGGTTGAAAT
CGATACAAACCGCTATAGCCTCGCCGTTTTTCATCGCTGTTCGATAGGAG
AAAACCATCCCCTTGATACCTTGTGGGCATTATGTCCCACTAGTTTAGTG
TGAACGCAGCATATGTTGGCGAAGCCTCCTACTTCAGATATTTCTATGCA
TAGCGCGCAATCAGGAATCCTTCCCTCCGCGCATCGTTCGCCGCTTTCGA
AACGACCCAAAGAAATTCTTCAAATTTGTTCACTTTTCATTTTTACGTTC
CAGCCGTTATCCCTCATTTTCATGGTGTCATGTGTCCTGCCTTGCGCGGC
CTGGCCGCCTGTCGCTTTTATTCGTGTACGAAATGCGGGGCACAACAGTC
AAGAAATCGGTTAGTTCATACATGGCACCATCGTACAATATTGTTGGAGC
CTTGCCCCAGCGTGTGCCCCTCCCGGTAGCAACAAAAAATCCAGTTTTGA
CTTTGCAGTCTGGTTTTCGATTTGAGTATGCCGCACAGCTCTTTGCGGAG
GACGGGGAGGAAGTCAATCAGGAATGGCTTTCTACAGTTTTGGATAAAGT
TGCTGAACAACTAGACTCCGCCGTAGAAGGCCCGGACTATCTGCCGCACA
CGGGCCATATCGACTTCCGAGAGGCTCAGAAAGCGTTCAAAGTACTGCAG
AAACAAGTAGTGTTTACTAGAGTCGATAAGGCTGCAAACTGTATTTGTGT
TATGTGTAAGGCTTGTTATATTAGACTAGCGTAAACGGAAGTTAATGGGG
AGGGATACGAAAAAATGACTGGGGGCACATTTGAAGAAATGAAGGAAACC
ATCACCACACGGCAACTAAAATTTCTGGAAGATGAACATCTACCGACCCC
TAAAGAATTTTCCAGATCCCAAACACGACAAGACGAAAGTCTAGGAAAAC
CCATAAACAACCTACCAGATACCTGCTGCCGAAACTTCATAAAGATATGG
TAGCTTGTCGAAGTACAACCACATGCTGTGCTACTACTACGGAAGGGGCA
GGACGAATAGCACATGCTTGTTTCGCTGAAATATTACGATGCACTGTGGA
GAGAAGTTGGAAGCTCCATCGGAATTGATTCAGAACGATCCTGGATCACG
TAAGGTGGGACGAAATTCTGGAGGTTCTGACCGGGGCAGATCAGATAGCG
CGTTACACTGGTGACTATTCGCCACACACTGTAGAAACGTATGATTTTGT
GGCTATGTATGCTAACATTCCTTGCCCACCCTTATAGTCCAATTGAAAGA
ATTCATTGATCTGGTGTGTGATTTCCAACTCCGGGATTCTGAGTTTCGTT
CAATTTCTGTTCCGTGTGGTATTTAAGGATAGCTCTCCGCTCGTTAAAAA
GGAAGATGTACATTGGTCCAAGCAGGAACCAGTTCCAGTAGACAAGGACA
ACAAGAAGGGGAAGACGTTTCTTAGTGGGAAAGATCGTCTATGCCGATGG
TTTGAGTTTGTTCTGACGGAAGGGTTCTCAGGCACGTATGTATGATAAAC
GAGATACTATGAGCTCTTTGAAGTCGTATCGTAGGTTTCCCCACATTGAG
ACTAAAATAAGTCACCGCTCAAGGAAAACACCTGTATATATTCCGAATCC
CTTTATTTCAGATGTCAGAGTACAGTTTTGGTATGGTGTTGAGCACAACA
TTTGGTACCGTATTCGTCATGGGGGGATTCATGAAGTTTAACTGTAAGAA
TAAGAGTGGAGATAGGAGCAACATGATAGGATGTATTTTGTCGATGGAAG
TACAGATAACCAACGATGTTGGTATCAACGCAGGTAGCCACTGTGGTATC
AATCAGGATGTGAGGATTGATTTGAACGTACTTTTAGAGACATGAGGATG
GTTGAATGGAACTCAATGGTTTT

protein sequence of EsuBft1510_4a-0001

>EsuBft1510_4 ID=EsuBft1510_4|Name=EsuBft1510_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=56bp
MVTWHMGVMPVAEVTYTAINVAMGNTRAAPYSYCVDAHAGLDADIVSWSF
VSAIIK

mRNA from alignment at Scaffold_350:81236..84337+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1510_4a-0001 ID=EsuBft1510_4a-0001|Name=EsuBft1510_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3102bp|location=Sequence derived from alignment at Scaffold_350:81236..84337+ (Ectocarpus subulatus male Bft15b)
ATGGTGACGTGGCATATGGGTGTGATGCCTGTAGCTGAAGTCACGTAGGA
TGTGTATGGTATGTGGCACATGGTGCATGCCGCTCGATTCAACAACAGCG
CCGTGCCAGCTCGTGTCACCCCGAAAATATGTAAACAATCGACAGCAGCG
TGTAGATCTTCTATTGTACCACGTCCAACCTTTCATCTCTTTGATCTGAT
ACCTTTCGTCCGAGTTTTCGCTTGAATTGCTCGTTGCCGATCTCCCTACC
GATCCCTCTTTGCACTCAACCCCAAAGGTACACGGCCATCAACGTCGCCA
TGGGGAACACAAGGGCTGCGCCGTACAGCTACTGCGTCGACGCCCACGCT
GGGTTGGATGCCGATATCGTGTCTTGGTCCTTCGTGAGTGCCATAATCAA
GTAGAATACGCTTCGGAGCTCTACCATGCCATCTATCTATCGGACCATCT
GTGCTTATTTCGGGATCCCACTTCTCGGCGGACTCATTAGCAATTCTGGC
TGAGTGAGCGACCGGTCAACAACCGAAGACAAATTAATTCTTCAGCTGAC
TCGTCCGCCCCAAAGCTGCGCGTACGGACGAGAGGATACATGGCACGCCC
ACGTCTCCTGGCCATCACAACGCGGGTTGAAATCGATACAAACCGCTATA
GCCTCGCCGTTTTTCATCGCTGTTCGATAGGAGAAAACCATCCCCTTGAT
ACCTTGTGGGCATTATGTCCCACTAGTTTAGTGTGAACGCAGCATATGTT
GGCGAAGCCTCCTACTTCAGATATTTCTATGCATAGCGCGCAATCAGGAA
TCCTTCCCTCCGCGCATCGTTCGCCGCTTTCGAAACGACCCAAAGAAATT
CTTCAAATTTGTTCACTTTTCATTTTTACGTTCCAGCCGTTATCCCTCAT
TTTCATGGTGTCATGTGTCCTGCCTTGCGCGGCCTGGCCGCCTGTCGCTT
TTATTCGTGTACGAAATGCGGGGCACAACAGTCAAGAAATCGGTTAGTTC
ATACATGGCACCATCGTACAATATTGTTGGAGCCTTGCCCCAGCGTGTGC
CCCTCCCGGTAGCAACAAAAAATCCAGTTTTGACTTTGCAGTCTGGTTTT
CGATTTGAGTATGCCGCACAGCTCTTTGCGGAGGACGGGGAGGAAGTCAA
TCAGGAATGGCTTTCTACAGTTTTGGATAAAGTTGCTGAACAACTAGACT
CCGCCGTAGAAGGCCCGGACTATCTGCCGCACACGGGCCATATCGACTTC
CGAGAGGCTCAGAAAGCGTTCAAAGTACTGCAGAAACAAGTAGTGTTTAC
TAGAGTCGATAAGGCTGCAAACTGTATTTGTGTTATGTGTAAGGCTTGTT
ATATTAGACTAGCGTAAACGGAAGTTAATGGGGAGGGATACGAAAAAATG
ACTGGGGGCACATTTGAAGAAATGAAGGAAACCATCACCACACGGCAACT
AAAATTTCTGGAAGATGAACATCTACCGACCCCTAAAGAATTTTCCAGAT
CCCAAACACGACAAGACGAAAGTCTAGGAAAACCCATAAACAACCTACCA
GATACCTGCTGCCGAAACTTCATAAAGATATGGTAGCTTGTCGAAGTACA
ACCACATGCTGTGCTACTACTACGGAAGGGGCAGGACGAATAGCACATGC
TTGTTTCGCTGAAATATTACGATGCACTGTGGAGAGAAGTTGGAAGCTCC
ATCGGAATTGATTCAGAACGATCCTGGATCACGTAAGGTGGGACGAAATT
CTGGAGGTTCTGACCGGGGCAGATCAGATAGCGCGTTACACTGGTGACTA
TTCGCCACACACTGTAGAAACGTATGATTTTGTGGCTATGTATGCTAACA
TTCCTTGCCCACCCTTATAGTCCAATTGAAAGAATTCATTGATCTGGTGT
GTGATTTCCAACTCCGGGATTCTGAGTTTCGTTCAATTTCTGTTCCGTGT
GGTATTTAAGGATAGCTCTCCGCTCGTTAAAAAGGAAGATGTACATTGGT
CCAAGCAGGAACCAGTTCCAGTAGACAAGGACAACAAGAAGGGGAAGACG
TTTCTTAGTGGGAAAGATCGTCTATGCCGATGGTTTGAGTTTGTTCTGAC
GGAAGGGTACGTTCAGTTTGGACCTCATATATATCGCCAATCTTCTGGTA
TATTTATGGGATCCTCACCTGCACCTGAGTTTGCCAATGTATTTGCTGAC
ATGCATGAGCTAAGGTTTAACAAAGAAATGGTCACAGAGTTCAAAGCTGC
TGCGCAATCTTGTGGAGACAGTGGTTGGGAGTCTATTTACCATCGAGTGT
TCATTGAACAATACGGGGTAAGGACAAGCGATACATTGATGACATCATCA
CTGTCGCTCTGGCTTCACAAGCCAATGGTTTAAGACTTGGGCATGAGCGA
AACCTTAGGAGGAATGTACGACAACCTGATTAGTGATGAAGATGGAAATC
TCATTCCTACCAGTATTGAGTTGGCCCAAGAACAAGTAGGACATAGCGCG
CACTTTTTGGACATGGAAGTAGTCCAAGACATGACAGGTTCTCAGGCACG
TATGTATGATAAACGAGATACTATGAGCTCTTTGAAGTCGTATCGTAGGT
TTCCCCACATTGAGACTAAAATAAGTCACCGCTCAAGGTATGCCGTATTG
CGTAGTCAGTTCTGCAGATTTGCCGTCCGTTGCACCCGCGTTGAATATTT
TGAGCTAGCTGCAGCAAAGCTGATGAGGGACATGTTGTTACATCAGTATC
AGGAGGATTATTTAATTGCTAAGTCACACAATTTTCATCAAGCTTTCTTC
AGGAAAACACCTGTATATATTCCGAATCCCTTTATTTCAGATGTCAGAGT
ACAGTTTTGGTATGGTGTTGAGCACAACATTTGGTACCGTATTCGTCATG
GGGGGATTCATGAAGTTTAACTGTAAGAATAAGAGTGGAGATAGGAGCAA
CATGATAGGATGTATTTTGTCGATGGAAGTACAGATAACCAACGATGTTG
GTATCAACGCAGGTAGCCACTGTGGTATCAATCAGGATGTGAGGATTGAT
TTGAACGTACTTTTAGAGACATGAGGATGGTTGAATGGAACTCAATGGTT
TT

Coding sequence (CDS) from alignment at Scaffold_350:81236..84337+

>EsuBft1510_4a-0001 ID=EsuBft1510_4a-0001|Name=EsuBft1510_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=171bp|location=Sequence derived from alignment at Scaffold_350:81236..84337+ (Ectocarpus subulatus male Bft15b)
ATGGTGACGTGGCATATGGGTGTGATGCCTGTAGCTGAAGTCACGTACAC
GGCCATCAACGTCGCCATGGGGAACACAAGGGCTGCGCCGTACAGCTACT
GCGTCGACGCCCACGCTGGGTTGGATGCCGATATCGTGTCTTGGTCCTTC
GTGAGTGCCATAATCAAGTAG