Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 400682.PAC_15719669 |
| ProteomeId | EsuBft105_25 |
| Protein domains | IPR000477 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 1 |
| Max annot lvl | 2759|Eukaryota |
| Length | 108 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.4e-06 |
| EggNOG OGs | KOG1075@1|root,KOG1075@2759|Eukaryota,39QPF@33154|Opisthokonta |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| Description | Reverse transcriptase (RNA-dependent DNA polymerase) |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft105_25a-0001 ID=EsuBft105_25a-0001|Name=EsuBft105_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1086bp|location=Sequence derived from alignment at Scaffold_100:412833..413918- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGACTCCGGAGAGCGTCGGACGATCGAGTGCAAGAGCGGTGTGCAGCA
AGGAGATGGAATGGGACCGCCCCTCTTCTGCTTCATCCTAGTCCCGATCG
TCTTGAAGCTTAGAGCCAAGTACGACCACCTCGGGGTATGCTTGAAATCT
TATATGGACGACATCAGCCTGCACTTCAAAAATATCACAGCGGAAAATAT
CCAGGTGATACCGGACCTCGTCGACGAACTAGAAGCTGTGGGCATCATCG
TCAACAGGGGGAAGAGCTCAGCGCTTCCCCCACCAGGGCACGACGTGACG
CCAGCAGAAAGGAGGCTACTTGGCGATGCAGGCCTACCGATTGCGGAGGA
GGGCATCACAGTTGTGGGAGTCCCCATTGGGAAGGATGCCTACGTCGAGG
ATATCGCAATGAAAGTGATAACTGAAGGGGGTGCAGACAAGCTTGCTCGC
ATGCTGGTGCGCATGCCAGACAAACAGGTGGCTCACCTCGTCACATCACA
ATCGCTGACACAGCGATCCGGATATATCGAGAGAGGCATCAATCATAAGC
TAGTGAAAGGGGCTTGTAAACGCCTGGACAATATGGTGATGTGGGTCCTA
GAGGCAACGATGGGGCTCAGAGACACCGAAGTCGAAGAAGAGTTCTTCCA
AGACGACTGCCAGCCTGACCGCTTCAAGTTAAAGCCCTATCAACAAGCCC
AGGCGCGCCTGTCGACAGGAGCCGGAGGACTAGGATTACCAGCAGCCGTT
ATGCGAAGGTTCTCAGCTTCTCTGGGCAACCTAGTCGGCACCCTTCCTGC
GGTTATAGCCGCGTTACGGGGTCCATTGGGAGAGTCGGTGAGAGTTCGGA
TACCGGGAACCGTGTTGGTGGAGCGGATGGGGGACGCTATCAAAGAACTC
AACCAGGAGCATGCAATATCGGTGGAGATTCTGAAGGGGATCCTTCCCCC
GTCATGGGTTGAGTGGGCCTTAGAACCGACAGGAGAAACCGGAAGGCGTC
AGCCCACCGTTGCAGAACTGGCAGCACACGATGGGGAATCTACTACGCCG
AGGAAAGCCCAGCACAAACTGGGCAAGGCGATNNNN back to topprotein sequence of EsuBft105_25a-0001 >EsuBft105_25 ID=EsuBft105_25|Name=EsuBft105_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=362bp
MDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKS
YMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVT
PAERRLLGDAGLPIAEEGITVVGVPIGKDAYVEDIAMKVITEGGADKLAR
MLVRMPDKQVAHLVTSQSLTQRSGYIERGINHKLVKGACKRLDNMVMWVL
EATMGLRDTEVEEEFFQDDCQPDRFKLKPYQQAQARLSTGAGGLGLPAAV
MRRFSASLGNLVGTLPAVIAALRGPLGESVRVRIPGTVLVERMGDAIKEL
NQEHAISVEILKGILPPSWVEWALEPTGETGRRQPTVAELAAHDGESTTP
RKAQHKLGKAXX back to topmRNA from alignment at Scaffold_100:412833..413918- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft105_25a-0001 ID=EsuBft105_25a-0001|Name=EsuBft105_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1086bp|location=Sequence derived from alignment at Scaffold_100:412833..413918- (Ectocarpus subulatus male Bft15b)
ATGGACTCCGGAGAGCGTCGGACGATCGAGTGCAAGAGCGGTGTGCAGCA
AGGAGATGGAATGGGACCGCCCCTCTTCTGCTTCATCCTAGTCCCGATCG
TCTTGAAGCTTAGAGCCAAGTACGACCACCTCGGGGTATGCTTGAAATCT
TATATGGACGACATCAGCCTGCACTTCAAAAATATCACAGCGGAAAATAT
CCAGGTGATACCGGACCTCGTCGACGAACTAGAAGCTGTGGGCATCATCG
TCAACAGGGGGAAGAGCTCAGCGCTTCCCCCACCAGGGCACGACGTGACG
CCAGCAGAAAGGAGGCTACTTGGCGATGCAGGCCTACCGATTGCGGAGGA
GGGCATCACAGTTGTGGGAGTCCCCATTGGGAAGGATGCCTACGTCGAGG
ATATCGCAATGAAAGTGATAACTGAAGGGGGTGCAGACAAGCTTGCTCGC
ATGCTGGTGCGCATGCCAGACAAACAGGTGGCTCACCTCGTCACATCACA
ATCGCTGACACAGCGATCCGGATATATCGAGAGAGGCATCAATCATAAGC
TAGTGAAAGGGGCTTGTAAACGCCTGGACAATATGGTGATGTGGGTCCTA
GAGGCAACGATGGGGCTCAGAGACACCGAAGTCGAAGAAGAGTTCTTCCA
AGACGACTGCCAGCCTGACCGCTTCAAGTTAAAGCCCTATCAACAAGCCC
AGGCGCGCCTGTCGACAGGAGCCGGAGGACTAGGATTACCAGCAGCCGTT
ATGCGAAGGTTCTCAGCTTCTCTGGGCAACCTAGTCGGCACCCTTCCTGC
GGTTATAGCCGCGTTACGGGGTCCATTGGGAGAGTCGGTGAGAGTTCGGA
TACCGGGAACCGTGTTGGTGGAGCGGATGGGGGACGCTATCAAAGAACTC
AACCAGGAGCATGCAATATCGGTGGAGATTCTGAAGGGGATCCTTCCCCC
GTCATGGGTTGAGTGGGCCTTAGAACCGACAGGAGAAACCGGAAGGCGTC
AGCCCACCGTTGCAGAACTGGCAGCACACGATGGGGAATCTACTACGCCG
AGGAAAGCCCAGCACAAACTGGGCAAGGCGATNNNN back to topCoding sequence (CDS) from alignment at Scaffold_100:412833..413918- >EsuBft105_25a-0001 ID=EsuBft105_25a-0001|Name=EsuBft105_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1086bp|location=Sequence derived from alignment at Scaffold_100:412833..413918- (Ectocarpus subulatus male Bft15b)
ATGGACTCCGGAGAGCGTCGGACGATCGAGTGCAAGAGCGGTGTGCAGCA
AGGAGATGGAATGGGACCGCCCCTCTTCTGCTTCATCCTAGTCCCGATCG
TCTTGAAGCTTAGAGCCAAGTACGACCACCTCGGGGTATGCTTGAAATCT
TATATGGACGACATCAGCCTGCACTTCAAAAATATCACAGCGGAAAATAT
CCAGGTGATACCGGACCTCGTCGACGAACTAGAAGCTGTGGGCATCATCG
TCAACAGGGGGAAGAGCTCAGCGCTTCCCCCACCAGGGCACGACGTGACG
CCAGCAGAAAGGAGGCTACTTGGCGATGCAGGCCTACCGATTGCGGAGGA
GGGCATCACAGTTGTGGGAGTCCCCATTGGGAAGGATGCCTACGTCGAGG
ATATCGCAATGAAAGTGATAACTGAAGGGGGTGCAGACAAGCTTGCTCGC
ATGCTGGTGCGCATGCCAGACAAACAGGTGGCTCACCTCGTCACATCACA
ATCGCTGACACAGCGATCCGGATATATCGAGAGAGGCATCAATCATAAGC
TAGTGAAAGGGGCTTGTAAACGCCTGGACAATATGGTGATGTGGGTCCTA
GAGGCAACGATGGGGCTCAGAGACACCGAAGTCGAAGAAGAGTTCTTCCA
AGACGACTGCCAGCCTGACCGCTTCAAGTTAAAGCCCTATCAACAAGCCC
AGGCGCGCCTGTCGACAGGAGCCGGAGGACTAGGATTACCAGCAGCCGTT
ATGCGAAGGTTCTCAGCTTCTCTGGGCAACCTAGTCGGCACCCTTCCTGC
GGTTATAGCCGCGTTACGGGGTCCATTGGGAGAGTCGGTGAGAGTTCGGA
TACCGGGAACCGTGTTGGTGGAGCGGATGGGGGACGCTATCAAAGAACTC
AACCAGGAGCATGCAATATCGGTGGAGATTCTGAAGGGGATCCTTCCCCC
GTCATGGGTTGAGTGGGCCTTAGAACCGACAGGAGAAACCGGAAGGCGTC
AGCCCACCGTTGCAGAACTGGCAGCACACGATGGGGAATCTACTACGCCG
AGGAAAGCCCAGCACAAACTGGGCAAGGCGATNNNN back to top
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