EsuBft105_25a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft105_25a-0001
Unique Name	EsuBft105_25a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_100	contig	Scaffold_100:412833..413918 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	400682.PAC_15719669
ProteomeId	EsuBft105_25
Protein domains	IPR000477
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	2759\|Eukaryota
Length	108
Hectar predicted targeting category	other localisation
Evalue	1.4e-06
EggNOG OGs	KOG1075@1\|root,KOG1075@2759\|Eukaryota,39QPF@33154\|Opisthokonta
Date last modified	2016-06-13
Date creation	2016-06-13
Description	Reverse transcriptase (RNA-dependent DNA polymerase)
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft105_25a	EsuBft105_25a	Ectocarpus subulatus male Bft15b	gene	Scaffold_100 412833..413918 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft105_25a-0001-exon	EsuBft105_25a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_100 412833..413918 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft105_25a-0001-cds	EsuBft105_25a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_100 412833..413918 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft105_25a-0001	EsuBft105_25	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_100 412833..413918 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_100:412833..413918-
coding sequence from alignment at Scaffold_100:412833..413918-

spliced messenger RNA

>EsuBft105_25a-0001 ID=EsuBft105_25a-0001|Name=EsuBft105_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1086bp|location=Sequence derived from alignment at Scaffold_100:412833..413918- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACTCCGGAGAGCGTCGGACGATCGAGTGCAAGAGCGGTGTGCAGCA
AGGAGATGGAATGGGACCGCCCCTCTTCTGCTTCATCCTAGTCCCGATCG
TCTTGAAGCTTAGAGCCAAGTACGACCACCTCGGGGTATGCTTGAAATCT
TATATGGACGACATCAGCCTGCACTTCAAAAATATCACAGCGGAAAATAT
CCAGGTGATACCGGACCTCGTCGACGAACTAGAAGCTGTGGGCATCATCG
TCAACAGGGGGAAGAGCTCAGCGCTTCCCCCACCAGGGCACGACGTGACG
CCAGCAGAAAGGAGGCTACTTGGCGATGCAGGCCTACCGATTGCGGAGGA
GGGCATCACAGTTGTGGGAGTCCCCATTGGGAAGGATGCCTACGTCGAGG
ATATCGCAATGAAAGTGATAACTGAAGGGGGTGCAGACAAGCTTGCTCGC
ATGCTGGTGCGCATGCCAGACAAACAGGTGGCTCACCTCGTCACATCACA
ATCGCTGACACAGCGATCCGGATATATCGAGAGAGGCATCAATCATAAGC
TAGTGAAAGGGGCTTGTAAACGCCTGGACAATATGGTGATGTGGGTCCTA
GAGGCAACGATGGGGCTCAGAGACACCGAAGTCGAAGAAGAGTTCTTCCA
AGACGACTGCCAGCCTGACCGCTTCAAGTTAAAGCCCTATCAACAAGCCC
AGGCGCGCCTGTCGACAGGAGCCGGAGGACTAGGATTACCAGCAGCCGTT
ATGCGAAGGTTCTCAGCTTCTCTGGGCAACCTAGTCGGCACCCTTCCTGC
GGTTATAGCCGCGTTACGGGGTCCATTGGGAGAGTCGGTGAGAGTTCGGA
TACCGGGAACCGTGTTGGTGGAGCGGATGGGGGACGCTATCAAAGAACTC
AACCAGGAGCATGCAATATCGGTGGAGATTCTGAAGGGGATCCTTCCCCC
GTCATGGGTTGAGTGGGCCTTAGAACCGACAGGAGAAACCGGAAGGCGTC
AGCCCACCGTTGCAGAACTGGCAGCACACGATGGGGAATCTACTACGCCG
AGGAAAGCCCAGCACAAACTGGGCAAGGCGATNNNN

protein sequence of EsuBft105_25a-0001

>EsuBft105_25 ID=EsuBft105_25|Name=EsuBft105_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=362bp
MDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKS
YMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVT
PAERRLLGDAGLPIAEEGITVVGVPIGKDAYVEDIAMKVITEGGADKLAR
MLVRMPDKQVAHLVTSQSLTQRSGYIERGINHKLVKGACKRLDNMVMWVL
EATMGLRDTEVEEEFFQDDCQPDRFKLKPYQQAQARLSTGAGGLGLPAAV
MRRFSASLGNLVGTLPAVIAALRGPLGESVRVRIPGTVLVERMGDAIKEL
NQEHAISVEILKGILPPSWVEWALEPTGETGRRQPTVAELAAHDGESTTP
RKAQHKLGKAXX

mRNA from alignment at Scaffold_100:412833..413918-

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft105_25a-0001 ID=EsuBft105_25a-0001|Name=EsuBft105_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1086bp|location=Sequence derived from alignment at Scaffold_100:412833..413918- (Ectocarpus subulatus male Bft15b)
ATGGACTCCGGAGAGCGTCGGACGATCGAGTGCAAGAGCGGTGTGCAGCA
AGGAGATGGAATGGGACCGCCCCTCTTCTGCTTCATCCTAGTCCCGATCG
TCTTGAAGCTTAGAGCCAAGTACGACCACCTCGGGGTATGCTTGAAATCT
TATATGGACGACATCAGCCTGCACTTCAAAAATATCACAGCGGAAAATAT
CCAGGTGATACCGGACCTCGTCGACGAACTAGAAGCTGTGGGCATCATCG
TCAACAGGGGGAAGAGCTCAGCGCTTCCCCCACCAGGGCACGACGTGACG
CCAGCAGAAAGGAGGCTACTTGGCGATGCAGGCCTACCGATTGCGGAGGA
GGGCATCACAGTTGTGGGAGTCCCCATTGGGAAGGATGCCTACGTCGAGG
ATATCGCAATGAAAGTGATAACTGAAGGGGGTGCAGACAAGCTTGCTCGC
ATGCTGGTGCGCATGCCAGACAAACAGGTGGCTCACCTCGTCACATCACA
ATCGCTGACACAGCGATCCGGATATATCGAGAGAGGCATCAATCATAAGC
TAGTGAAAGGGGCTTGTAAACGCCTGGACAATATGGTGATGTGGGTCCTA
GAGGCAACGATGGGGCTCAGAGACACCGAAGTCGAAGAAGAGTTCTTCCA
AGACGACTGCCAGCCTGACCGCTTCAAGTTAAAGCCCTATCAACAAGCCC
AGGCGCGCCTGTCGACAGGAGCCGGAGGACTAGGATTACCAGCAGCCGTT
ATGCGAAGGTTCTCAGCTTCTCTGGGCAACCTAGTCGGCACCCTTCCTGC
GGTTATAGCCGCGTTACGGGGTCCATTGGGAGAGTCGGTGAGAGTTCGGA
TACCGGGAACCGTGTTGGTGGAGCGGATGGGGGACGCTATCAAAGAACTC
AACCAGGAGCATGCAATATCGGTGGAGATTCTGAAGGGGATCCTTCCCCC
GTCATGGGTTGAGTGGGCCTTAGAACCGACAGGAGAAACCGGAAGGCGTC
AGCCCACCGTTGCAGAACTGGCAGCACACGATGGGGAATCTACTACGCCG
AGGAAAGCCCAGCACAAACTGGGCAAGGCGATNNNN

Coding sequence (CDS) from alignment at Scaffold_100:412833..413918-

>EsuBft105_25a-0001 ID=EsuBft105_25a-0001|Name=EsuBft105_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1086bp|location=Sequence derived from alignment at Scaffold_100:412833..413918- (Ectocarpus subulatus male Bft15b)
ATGGACTCCGGAGAGCGTCGGACGATCGAGTGCAAGAGCGGTGTGCAGCA
AGGAGATGGAATGGGACCGCCCCTCTTCTGCTTCATCCTAGTCCCGATCG
TCTTGAAGCTTAGAGCCAAGTACGACCACCTCGGGGTATGCTTGAAATCT
TATATGGACGACATCAGCCTGCACTTCAAAAATATCACAGCGGAAAATAT
CCAGGTGATACCGGACCTCGTCGACGAACTAGAAGCTGTGGGCATCATCG
TCAACAGGGGGAAGAGCTCAGCGCTTCCCCCACCAGGGCACGACGTGACG
CCAGCAGAAAGGAGGCTACTTGGCGATGCAGGCCTACCGATTGCGGAGGA
GGGCATCACAGTTGTGGGAGTCCCCATTGGGAAGGATGCCTACGTCGAGG
ATATCGCAATGAAAGTGATAACTGAAGGGGGTGCAGACAAGCTTGCTCGC
ATGCTGGTGCGCATGCCAGACAAACAGGTGGCTCACCTCGTCACATCACA
ATCGCTGACACAGCGATCCGGATATATCGAGAGAGGCATCAATCATAAGC
TAGTGAAAGGGGCTTGTAAACGCCTGGACAATATGGTGATGTGGGTCCTA
GAGGCAACGATGGGGCTCAGAGACACCGAAGTCGAAGAAGAGTTCTTCCA
AGACGACTGCCAGCCTGACCGCTTCAAGTTAAAGCCCTATCAACAAGCCC
AGGCGCGCCTGTCGACAGGAGCCGGAGGACTAGGATTACCAGCAGCCGTT
ATGCGAAGGTTCTCAGCTTCTCTGGGCAACCTAGTCGGCACCCTTCCTGC
GGTTATAGCCGCGTTACGGGGTCCATTGGGAGAGTCGGTGAGAGTTCGGA
TACCGGGAACCGTGTTGGTGGAGCGGATGGGGGACGCTATCAAAGAACTC
AACCAGGAGCATGCAATATCGGTGGAGATTCTGAAGGGGATCCTTCCCCC
GTCATGGGTTGAGTGGGCCTTAGAACCGACAGGAGAAACCGGAAGGCGTC
AGCCCACCGTTGCAGAACTGGCAGCACACGATGGGGAATCTACTACGCCG
AGGAAAGCCCAGCACAAACTGGGCAAGGCGATNNNN