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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
ProteomeId | EsuBft1031_5 |
Protein domains | NON_CYTOPLASMIC_DOMAIN |
Protein domains | SignalP-noTM |
Protein domains | Coil |
Protein domains | SIGNAL_PEPTIDE_C_REGION |
Protein domains | SIGNAL_PEPTIDE |
Protein domains | SIGNAL_PEPTIDE_H_REGION |
Protein domains | SIGNAL_PEPTIDE_N_REGION |
Owner | apollo_admin@sb-roscoff.fr |
Nb exon | 2 |
Length | 198 |
Hectar predicted targeting category | signal peptide |
Date last modified | 2016-06-14 |
Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1031_5a-0001 ID=EsuBft1031_5a-0001|Name=EsuBft1031_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1986bp|location=Sequence derived from alignment at Scaffold_417:147269..152543- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TGCTCATCTCGGCGCCCGCTGTGGATATGAGCACGTCGTCCGTGGTTGCG GTATGAGGCGGACGACCATAGCCATACTATTCGTTCAAGTACTGGCCCGA TTCAGCTGTGTTGCAACTATTCTTGAGGCAAGGCGAGATGCCCTCAGCCC CGATGACGCCACCAGTACAGTTGCCGCGACTGCAGGCGGCACAGGGCGAG TAATCCAGCTTAGGGCGACGGAGAGTGACGTCAAGGCGGCCGCACGCCAC TGCGTCGCCGTGGACGAAGTCGGACGTTTCCCGGCAAACCACGCGCTCGG ACTCTTCGAAACTGAACCCGGACGATTGGTACTGGGCACTCCTCGAGTCA CGGACGCATCGGTGGAATTCTCTGCATTGCCGCAACGACAAAATGCTGGT GGTAGCAATAGTGATGAAACACCAGCCACCGGCACGATCGTATTCAAGGT GGTGCTGGAAGTCGACAATACGGGACGATGGAGAGAAGGAGGAGGTGGTA CAACCTCTGGAAGAAGAACCGGCGAGCCCGTTCCGACAGGAGAGGGTATG GAGATGACGGCAGCTGCTGCGACCGCAGCGACTGCAGAAAACCCCGCGGA GGCGCAGATGGCGATATCAGCCCTGGCCGCTTGGAACCTGATGACGACAC GGGAAACACCGGCTATGTTGCCGATGATCAGGGTAGAGGTGGGAGCCGCG TTCGGGTATCACGGGGACTGGTACACGGCCAGCAAGACCATACCCCTCAC TTCCGACGGCACCGGCCACAGCAGTGCTTTGCTTTCGAGCGCGACGTTCG ACTGGCAGCCCGCACCAGATGTCTGGAGCAAGCTCGACGAACCGATGGCA GCGGACGTGAGAGTTTATGGCACCGCGTCGACGCCCACGGAAGAACAGGA GGCAGGGCTATTGTTGTTGCGAGGCACGCTGTGCAAGCGAGCATCGGGCT TCGGAGGCCGAAGCACGCGCGACGAAACAACACAGGGCACCATGAAGGCG GCCTTGACGCCTTACGCCGAACGCCTTCCAGCGGTTGCCGCCGAAGCTGT CGCGATCAGCCCCTCTCGGCCTTCCGTTGTCGTTTCCGAAATACGAGACG AAGAGTGGTGGAGAGCCCGCGAAGAGGAGGAATCCGGGAGAGGGATGGAT GCGGTCGACGCGCTGCCCCGCCTGCCCCGGTGGAAACCCGGGGATTGGAA GAAAAGACGCAGGAGAAGGAAGAGACAGGAAGAGGAAAGAAAAAAACAAC GAGCGCAGGAGGCCGCTCGCCGAAGAGCTGACAAATGGGGGGGTGACAGA GGACGTGACACGGCCAGTCGCGACGGACGGAATCGCAGGGGTGGTGGTAG GGAGGCAAAAGTCGGACGGTCACCATGGGGGGCTGTGAAAGGGGCTTGGC GTGCTGTCGGGCGAGGTTGGCGAAGAGTCCGGCGGAAATTCCGAAGAAAC TGCAGTGAGCATAGTGCTCGTCGGACAAGGTAGAAATTTGAGATATGTAA GGGGGTTAGCGACGGGTTGCTGCGGAAGTATCCTTTATTGCGACAATGGT CACAGGTTGGGTATTGGCAGTCTGTACACCATGTTCCGTCGTCAACCGGC GTCTATTTGTAACGAGTACAACCTACAATCATAAGATATTCTCTTCATGT TATCTGCTCAAGAGATTCTGCCCGACGTCAAGCCCACCTACCGAGATGCG CATTACGCCTAGTCATTGCTGGTTCACGTCTAATGAGCCTTCATGTGTAG CTTACGTTCACGGCCTTCGACGAGCAACGTTGCCCGCCTAATTCTTCTCC TTTTCCGGCCGTGTTGTAGGGCAACCTGGAAGGGCTGCTTGACAATTTTC ATTGGACAACCGACCGAATGTACACGGCACCATTTATCTCCACCCACGCA GAATAAAGCCCATATTTTGTGTCACGAGGGTATTTTGTTGCGTGTTCCCC TTGGCCAAAACCTGTCAGGTACATATTATATGAATA back to topprotein sequence of EsuBft1031_5a-0001 >EsuBft1031_5 ID=EsuBft1031_5|Name=EsuBft1031_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=476bp
MRRTTIAILFVQVLARFSCVATILEARRDALSPDDATSTVAATAGGTGRV IQLRATESDVKAAARHCVAVDEVGRFPANHALGLFETEPGRLVLGTPRVT DASVEFSALPQRQNAGGSNSDETPATGTIVFKVVLEVDNTGRWREGGGGT TSGRRTGEPVPTGEGMEMTAAAATAATAENPAEAQMAISALAAWNLMTTR ETPAMLPMIRVEVGAAFGYHGDWYTASKTIPLTSDGTGHSSALLSSATFD WQPAPDVWSKLDEPMAADVRVYGTASTPTEEQEAGLLLLRGTLCKRASGF GGRSTRDETTQGTMKAALTPYAERLPAVAAEAVAISPSRPSVVVSEIRDE EWWRAREEEESGRGMDAVDALPRLPRWKPGDWKKRRRRRKRQEEERKKQR AQEAARRRADKWGGDRGRDTASRDGRNRRGGGREAKVGRSPWGAVKGAWR AVGRGWRRVRRKFRRNCSEHSARRTR back to topmRNA from alignment at Scaffold_417:147269..152543- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1031_5a-0001 ID=EsuBft1031_5a-0001|Name=EsuBft1031_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5275bp|location=Sequence derived from alignment at Scaffold_417:147269..152543- (Ectocarpus subulatus male Bft15b) TGCTCATCTCGGCGCCCGCTGTGGATATGAGCACGTCGTCCGTGGTTGCG
GTATGAGGCGGACGACCATAGCCATACTATTCGTTCAAGTACTGGCCCGA
TTCAGCTGTGTTGCAACTATTCTTGAGGTGGGTGTGGCTGGAAACAGCCA
CGTGTAGAGCATGTGACCATCATCTTGTGTGTGTTCGTCTCAGGTTTGTC
TTGATGATGTCCTTGTGGGTGCACCATCCTTGTGTGCCTGCGAGCACCAT
CTTTATGCTGAAGTTCGTTGTGCTGACCTCGTTTTACATTAAGCTCTTCG
CGACCGGCAGTCGGCAGTGCCATCTTCGTGTGGTGTCGTGTCAATGCACA
TAAAGTAGTCGAGTCTATGCGTAGACTACATAAACCCATTGGCGAGCTTC
GGATGTAGACTACGTTTTGGAAAGTTCACTTCCACTTTTTACGGAAAAGA
GCTGTAAGGGTGTGTCGTATCAGCAGAATCGAAACAAAAAATTAGAATCG
AGTTTCAGATTAAGTCTAGAACGAGCCAGCCAAATTCGACCTACGCGTCT
CATCGAAAAATTAGCAAAACTGAGGTTCAAATCGAGAACACGCCCGAACG
GACGCCGACCAGCCCAACAGTCCCGACAGGCGGCGTGGGCGACCTGCGGG
CGACGGTTTGTCCTTTTGCACAACACTCGCACAATCATGGCTCGCTCTCC
TCCCCGCCGTGCGGGCAGCCGCTCGTGGCAGCGAGGGAAAACGAACAAGC
GTATAGGCAGCTCCTGGAGCTGGTGGTGTACCCCAACCCACCGATGGCAC
GGGTGGCACATGAATCCCGACTCTATTGCTCGGCGCACGCCATTGGCAAA
TCGGCAACAAGTTGAACCTGCCGTCGCCGTTCGCCTGCTGTGACATCATC
TTTCTGCTTGCTTGGTGGGCGCGCGTGGTGTAGCGTGTGCAATCCGCGCG
CACGTGGGCGCGCAGCGTGCGAGATGAAAAACGTCAACCGCCGCAGCACG
CTCCCAACAGCCCAACGTCCACCCGAAGTTGGTTGCGTTTGGCAATAGTC
AACTCCCAATTAATCCTCTGGCCATTTTTTCGAGATCAAGTTTAGGAACA
GGAAGATCCGTTCGCTTATCCCGAAAGAACGCATTCCAACCAATCAGAGC
AGATGGACGCTGACTCTTTTTAGTCTTAAACTGAAACTCGATTCTGATTT
TTAACTTCGATTCCGCCGATAAGACACACCCTTATGGCCGCCATAAAATA
TGAACTTTCGACGCTAAATAGGAAGAACTTTTAAGCACGAAGGGCAGCTG
GCGTCTATTAAAGCTCAACTTTTTCAAGTTTTTTCATCTTTAGCTTGTAG
CTGTTTTGGTCAACACCACGCCAGGATGGGTGCTGTTGCACACCTCGCCC
CACCACCGTATGCCCGTGGTCGGTCGTAGAGCTTACTGCCAGCAGTGGGA
GGACTCCTGCTTCGGCGCTGACGAAGGTTGTAGACTTGTCAAATTGATAT
CGAGCCACAGCTCGCTCATGTTTGTTTCGAACACACACACACACGCCCAC
AGCAGCAGCGGCTGCATCGATCGCCCAACACGATGTACAATAATAGTGCA
GCATGATCCACAACAAATCCTAAGGCATCTTGCTCCCTTGTGCGTTGTTG
GCTCTGGCTTGGAGATCGGCGGGATGCGTTGCGAAAGAGCGACGAGCGTT
TGGGCGTGCTGCGTGCGTTTGTTGCTGCGTGCGCACACCCTGTCTGGATG
GGTGCATATATGCATTCCAGCTCGAAAACGTCGCGTCCTCTCTCACAGGA
CGCTCACAACGCTCCACTCAGACCCATCTCGGTTGGTGGCAAGGTATACC
TCGGAGCTGTGGAGCACACAGCGTTGAAGGTTTCACCCGAATGCAAGCAT
CTGTTTGGGAGATATGGTGACTTGGTTGCGGGCCGTGCTGATGAAGATTC
CCTCATGGTGACATCGTGACATCACATCGTTAAAAGTAAAACCTTCGGAA
AAAATCGGGACTGGTCCCAGGAACGGTGCTGTTGAGAGTGAAAGTGAACT
TTTGCCAAGAATGCTTCCGAAACCGTCTGATTTTGAATTTTCGTAGTTTG
TTTTGCCGTCCGTCAATGTGAACTGGCTCGCCCGACCCACTATTTACATA
CATTTTCCCCGCCTGACGCTGGCTCTATATCCGTACTTAATCCAATACAC
AAAAAGAAACAACCCTTCCCGCAACCTTCCAGCCATTTCTAACTGTACCT
ACGAATTGTTATCAGTGGAGGACACCATGAAGCGCTTGTGTGTGCTGGCA
CGTTCAGGTTTGCTTCTTGGGTGGTGATGTCGAGGATCGTAGTAATGGCC
TCCACGAATCTCCGCAAATTAGACCGGCACCCAGTGACTTGTACTGCTTG
TGCTCGCCGCCATTGACCCCAATCTCCTGCGCGTCCTCAGCGGTAGCTGA
TGTGTTTCGGTCAATTTGCGGGGATTTGCGGACATTGTATGCTACAGCAG
TAGGCCATTACTACTGTACGATCCTCGGTGTCACCACCCAAGAGGAAACC
TGAACGTGCCAGCACACACGGCACCTCTTCATGGCGTCCTCTACTAAATA
CTAGCAGTGCTTGGGTACAGTTTGAATGCTAAATTGACCTCCTTGAGCCC
CTGGCGTTTTGGCTCTGTTGACTTTATTTAATGTAGACTGGTGTGAATTT
TTGTCGTGACTTCAAAGGGGGAGTTTAAGGGAGACTCGTGATCTAGATGT
TTTGAGCAGCCTCTGCTGCCCCCCGTGCGAGAATCAACGATTTCTTTTGT
CCCGATGCCTGCCGACTGTTCTCGTATGTCTCGTGCGCATTTTCTGGTGC
TCTTGCGGTTACTTTCAAAATCAGCAGACACTTTGGTCGACCATCAAAAG
GTTGGGTTCCTTTCCTCGACAACTAAAGAACTCCGATCAGATATCACACG
AAGAATAATAGTTCCTCTGAGGTGGAACAAGCGCGTTCCATCACTGGAGG
CTTGAACAACTCGGAATTCATTTACCTTGCAAAGAACCGCACTCCCAATA
ATAGGCACTAAATAAATGTTTATCCAGGTGGCCGCCTACAGGATACGTAC
GACCGTCAATATTGTAGATACGTGGCCTATTCCGTTTAAGGCGACCTACA
GATACAGTAACGCCCACCAGAAGAGATGCATTGTTACCCTATTGGAAAAT
TTCAAGTATCATGTTCCTTTTTTGCCAAAATCGCAGTGCGCGTGGAACGA
TCATAAGTAAAACACAAAAGAGCAACAGCCTTACGGGCGAACAACACCCA
GGCAACTCCCGCAAGCCTGCCGCCAACAACAATGTTTGTAAACCATCACC
CAAATATATGTTGTGCACAACAACTTTAACCTCCTGCACGCACAACTGGG
CACGCTTACCCCGCAGGCAAGGCGAGATGCCCTCAGCCCCGATGACGCCA
CCAGTACAGTTGCCGCGACTGCAGGCGGCACAGGGCGAGTAATCCAGCTT
AGGGCGACGGAGAGTGACGTCAAGGCGGCCGCACGCCACTGCGTCGCCGT
GGACGAAGTCGGACGTTTCCCGGCAAACCACGCGCTCGGACTCTTCGAAA
CTGAACCCGGACGATTGGTACTGGGCACTCCTCGAGTCACGGACGCATCG
GTGGAATTCTCTGCATTGCCGCAACGACAAAATGCTGGTGGTAGCAATAG
TGATGAAACACCAGCCACCGGCACGATCGTATTCAAGGTGGTGCTGGAAG
TCGACAATACGGGACGATGGAGAGAAGGAGGAGGTGGTACAACCTCTGGA
AGAAGAACCGGCGAGCCCGTTCCGACAGGAGAGGGTATGGAGATGACGGC
AGCTGCTGCGACCGCAGCGACTGCAGAAAACCCCGCGGAGGCGCAGATGG
CGATATCAGCCCTGGCCGCTTGGAACCTGATGACGACACGGGAAACACCG
GCTATGTTGCCGATGATCAGGGTAGAGGTGGGAGCCGCGTTCGGGTATCA
CGGGGACTGGTACACGGCCAGCAAGACCATACCCCTCACTTCCGACGGCA
CCGGCCACAGCAGTGCTTTGCTTTCGAGCGCGACGTTCGACTGGCAGCCC
GCACCAGATGTCTGGAGCAAGCTCGACGAACCGATGGCAGCGGACGTGAG
AGTTTATGGCACCGCGTCGACGCCCACGGAAGAACAGGAGGCAGGGCTAT
TGTTGTTGCGAGGCACGCTGTGCAAGCGAGCATCGGGCTTCGGAGGCCGA
AGCACGCGCGACGAAACAACACAGGGCACCATGAAGGCGGCCTTGACGCC
TTACGCCGAACGCCTTCCAGCGGTTGCCGCCGAAGCTGTCGCGATCAGCC
CCTCTCGGCCTTCCGTTGTCGTTTCCGAAATACGAGACGAAGAGTGGTGG
AGAGCCCGCGAAGAGGAGGAATCCGGGAGAGGGATGGATGCGGTCGACGC
GCTGCCCCGCCTGCCCCGGTGGAAACCCGGGGATTGGAAGAAAAGACGCA
GGAGAAGGAAGAGACAGGAAGAGGAAAGAAAAAAACAACGAGCGCAGGAG
GCCGCTCGCCGAAGAGCTGACAAATGGGGGGGTGACAGAGGACGTGACAC
GGCCAGTCGCGACGGACGGAATCGCAGGGGTGGTGGTAGGGAGGCAAAAG
TCGGACGGTCACCATGGGGGGCTGTGAAAGGGGCTTGGCGTGCTGTCGGG
CGAGGTTGGCGAAGAGTCCGGCGGAAATTCCGAAGAAACTGCAGTGAGCA
TAGTGCTCGTCGGACAAGGTAGAAATTTGAGATATGTAAGGGGGTTAGCG
ACGGGTTGCTGCGGAAGTATCCTTTATTGCGACAATGGTCACAGGTTGGG
TATTGGCAGTCTGTACACCATGTTCCGTCGTCAACCGGCGTCTATTTGTA
ACGAGTACAACCTACAATCATAAGATATTCTCTTCATGTTATCTGCTCAA
GAGATTCTGCCCGACGTCAAGCCCACCTACCGAGATGCGCATTACGCCTA
GTCATTGCTGGTTCACGTCTAATGAGCCTTCATGTGTAGCTTACGTTCAC
GGCCTTCGACGAGCAACGTTGCCCGCCTAATTCTTCTCCTTTTCCGGCCG
TGTTGTAGGGCAACCTGGAAGGGCTGCTTGACAATTTTCATTGGACAACC
GACCGAATGTACACGGCACCATTTATCTCCACCCACGCAGAATAAAGCCC
ATATTTTGTGTCACGAGGGTATTTTGTTGCGTGTTCCCCTTGGCCAAAAC
CTGTCAGGTACATATTATATGAATA back to topCoding sequence (CDS) from alignment at Scaffold_417:147269..152543- >EsuBft1031_5a-0001 ID=EsuBft1031_5a-0001|Name=EsuBft1031_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1431bp|location=Sequence derived from alignment at Scaffold_417:147269..152543- (Ectocarpus subulatus male Bft15b) ATGAGGCGGACGACCATAGCCATACTATTCGTTCAAGTACTGGCCCGATT CAGCTGTGTTGCAACTATTCTTGAGGCAAGGCGAGATGCCCTCAGCCCCG ATGACGCCACCAGTACAGTTGCCGCGACTGCAGGCGGCACAGGGCGAGTA ATCCAGCTTAGGGCGACGGAGAGTGACGTCAAGGCGGCCGCACGCCACTG CGTCGCCGTGGACGAAGTCGGACGTTTCCCGGCAAACCACGCGCTCGGAC TCTTCGAAACTGAACCCGGACGATTGGTACTGGGCACTCCTCGAGTCACG GACGCATCGGTGGAATTCTCTGCATTGCCGCAACGACAAAATGCTGGTGG TAGCAATAGTGATGAAACACCAGCCACCGGCACGATCGTATTCAAGGTGG TGCTGGAAGTCGACAATACGGGACGATGGAGAGAAGGAGGAGGTGGTACA ACCTCTGGAAGAAGAACCGGCGAGCCCGTTCCGACAGGAGAGGGTATGGA GATGACGGCAGCTGCTGCGACCGCAGCGACTGCAGAAAACCCCGCGGAGG CGCAGATGGCGATATCAGCCCTGGCCGCTTGGAACCTGATGACGACACGG GAAACACCGGCTATGTTGCCGATGATCAGGGTAGAGGTGGGAGCCGCGTT CGGGTATCACGGGGACTGGTACACGGCCAGCAAGACCATACCCCTCACTT CCGACGGCACCGGCCACAGCAGTGCTTTGCTTTCGAGCGCGACGTTCGAC TGGCAGCCCGCACCAGATGTCTGGAGCAAGCTCGACGAACCGATGGCAGC GGACGTGAGAGTTTATGGCACCGCGTCGACGCCCACGGAAGAACAGGAGG CAGGGCTATTGTTGTTGCGAGGCACGCTGTGCAAGCGAGCATCGGGCTTC GGAGGCCGAAGCACGCGCGACGAAACAACACAGGGCACCATGAAGGCGGC CTTGACGCCTTACGCCGAACGCCTTCCAGCGGTTGCCGCCGAAGCTGTCG CGATCAGCCCCTCTCGGCCTTCCGTTGTCGTTTCCGAAATACGAGACGAA GAGTGGTGGAGAGCCCGCGAAGAGGAGGAATCCGGGAGAGGGATGGATGC GGTCGACGCGCTGCCCCGCCTGCCCCGGTGGAAACCCGGGGATTGGAAGA AAAGACGCAGGAGAAGGAAGAGACAGGAAGAGGAAAGAAAAAAACAACGA GCGCAGGAGGCCGCTCGCCGAAGAGCTGACAAATGGGGGGGTGACAGAGG ACGTGACACGGCCAGTCGCGACGGACGGAATCGCAGGGGTGGTGGTAGGG AGGCAAAAGTCGGACGGTCACCATGGGGGGCTGTGAAAGGGGCTTGGCGT GCTGTCGGGCGAGGTTGGCGAAGAGTCCGGCGGAAATTCCGAAGAAACTG CAGTGAGCATAGTGCTCGTCGGACAAGGTAG back to top
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