EsuBft1031_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1031_5a-0001
Unique NameEsuBft1031_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_417contigScaffold_417:147269..152543 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1031_5
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSignalP-noTM
Protein domainsCoil
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE_N_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length198
Hectar predicted targeting categorysignal peptide
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1031_5aEsuBft1031_5aEctocarpus subulatus male Bft15bgeneScaffold_417 147269..152543 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1031_5a-0001-exonagat-exon-36784Ectocarpus subulatus male Bft15bexonScaffold_417 147269..149127 -
EsuBft1031_5a-0001-exonEsuBft1031_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_417 152417..152543 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1031_5a-0001-exonagat-three_prime_utr-307Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_417 147269..147771 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1031_5a-0001-cdsEsuBft1031_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_417 147772..149127 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1031_5a-0001-exonagat-five_prime_utr-186Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_417 152492..152543 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1031_5a-0001EsuBft1031_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_417 147772..152491 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1031_5a-0001 ID=EsuBft1031_5a-0001|Name=EsuBft1031_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1986bp|location=Sequence derived from alignment at Scaffold_417:147269..152543- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGCTCATCTCGGCGCCCGCTGTGGATATGAGCACGTCGTCCGTGGTTGCG
GTATGAGGCGGACGACCATAGCCATACTATTCGTTCAAGTACTGGCCCGA
TTCAGCTGTGTTGCAACTATTCTTGAGGCAAGGCGAGATGCCCTCAGCCC
CGATGACGCCACCAGTACAGTTGCCGCGACTGCAGGCGGCACAGGGCGAG
TAATCCAGCTTAGGGCGACGGAGAGTGACGTCAAGGCGGCCGCACGCCAC
TGCGTCGCCGTGGACGAAGTCGGACGTTTCCCGGCAAACCACGCGCTCGG
ACTCTTCGAAACTGAACCCGGACGATTGGTACTGGGCACTCCTCGAGTCA
CGGACGCATCGGTGGAATTCTCTGCATTGCCGCAACGACAAAATGCTGGT
GGTAGCAATAGTGATGAAACACCAGCCACCGGCACGATCGTATTCAAGGT
GGTGCTGGAAGTCGACAATACGGGACGATGGAGAGAAGGAGGAGGTGGTA
CAACCTCTGGAAGAAGAACCGGCGAGCCCGTTCCGACAGGAGAGGGTATG
GAGATGACGGCAGCTGCTGCGACCGCAGCGACTGCAGAAAACCCCGCGGA
GGCGCAGATGGCGATATCAGCCCTGGCCGCTTGGAACCTGATGACGACAC
GGGAAACACCGGCTATGTTGCCGATGATCAGGGTAGAGGTGGGAGCCGCG
TTCGGGTATCACGGGGACTGGTACACGGCCAGCAAGACCATACCCCTCAC
TTCCGACGGCACCGGCCACAGCAGTGCTTTGCTTTCGAGCGCGACGTTCG
ACTGGCAGCCCGCACCAGATGTCTGGAGCAAGCTCGACGAACCGATGGCA
GCGGACGTGAGAGTTTATGGCACCGCGTCGACGCCCACGGAAGAACAGGA
GGCAGGGCTATTGTTGTTGCGAGGCACGCTGTGCAAGCGAGCATCGGGCT
TCGGAGGCCGAAGCACGCGCGACGAAACAACACAGGGCACCATGAAGGCG
GCCTTGACGCCTTACGCCGAACGCCTTCCAGCGGTTGCCGCCGAAGCTGT
CGCGATCAGCCCCTCTCGGCCTTCCGTTGTCGTTTCCGAAATACGAGACG
AAGAGTGGTGGAGAGCCCGCGAAGAGGAGGAATCCGGGAGAGGGATGGAT
GCGGTCGACGCGCTGCCCCGCCTGCCCCGGTGGAAACCCGGGGATTGGAA
GAAAAGACGCAGGAGAAGGAAGAGACAGGAAGAGGAAAGAAAAAAACAAC
GAGCGCAGGAGGCCGCTCGCCGAAGAGCTGACAAATGGGGGGGTGACAGA
GGACGTGACACGGCCAGTCGCGACGGACGGAATCGCAGGGGTGGTGGTAG
GGAGGCAAAAGTCGGACGGTCACCATGGGGGGCTGTGAAAGGGGCTTGGC
GTGCTGTCGGGCGAGGTTGGCGAAGAGTCCGGCGGAAATTCCGAAGAAAC
TGCAGTGAGCATAGTGCTCGTCGGACAAGGTAGAAATTTGAGATATGTAA
GGGGGTTAGCGACGGGTTGCTGCGGAAGTATCCTTTATTGCGACAATGGT
CACAGGTTGGGTATTGGCAGTCTGTACACCATGTTCCGTCGTCAACCGGC
GTCTATTTGTAACGAGTACAACCTACAATCATAAGATATTCTCTTCATGT
TATCTGCTCAAGAGATTCTGCCCGACGTCAAGCCCACCTACCGAGATGCG
CATTACGCCTAGTCATTGCTGGTTCACGTCTAATGAGCCTTCATGTGTAG
CTTACGTTCACGGCCTTCGACGAGCAACGTTGCCCGCCTAATTCTTCTCC
TTTTCCGGCCGTGTTGTAGGGCAACCTGGAAGGGCTGCTTGACAATTTTC
ATTGGACAACCGACCGAATGTACACGGCACCATTTATCTCCACCCACGCA
GAATAAAGCCCATATTTTGTGTCACGAGGGTATTTTGTTGCGTGTTCCCC
TTGGCCAAAACCTGTCAGGTACATATTATATGAATA
back to top

protein sequence of EsuBft1031_5a-0001

>EsuBft1031_5 ID=EsuBft1031_5|Name=EsuBft1031_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=476bp
MRRTTIAILFVQVLARFSCVATILEARRDALSPDDATSTVAATAGGTGRV
IQLRATESDVKAAARHCVAVDEVGRFPANHALGLFETEPGRLVLGTPRVT
DASVEFSALPQRQNAGGSNSDETPATGTIVFKVVLEVDNTGRWREGGGGT
TSGRRTGEPVPTGEGMEMTAAAATAATAENPAEAQMAISALAAWNLMTTR
ETPAMLPMIRVEVGAAFGYHGDWYTASKTIPLTSDGTGHSSALLSSATFD
WQPAPDVWSKLDEPMAADVRVYGTASTPTEEQEAGLLLLRGTLCKRASGF
GGRSTRDETTQGTMKAALTPYAERLPAVAAEAVAISPSRPSVVVSEIRDE
EWWRAREEEESGRGMDAVDALPRLPRWKPGDWKKRRRRRKRQEEERKKQR
AQEAARRRADKWGGDRGRDTASRDGRNRRGGGREAKVGRSPWGAVKGAWR
AVGRGWRRVRRKFRRNCSEHSARRTR
back to top

mRNA from alignment at Scaffold_417:147269..152543-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1031_5a-0001 ID=EsuBft1031_5a-0001|Name=EsuBft1031_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5275bp|location=Sequence derived from alignment at Scaffold_417:147269..152543- (Ectocarpus subulatus male Bft15b)
TGCTCATCTCGGCGCCCGCTGTGGATATGAGCACGTCGTCCGTGGTTGCG GTATGAGGCGGACGACCATAGCCATACTATTCGTTCAAGTACTGGCCCGA TTCAGCTGTGTTGCAACTATTCTTGAGGTGGGTGTGGCTGGAAACAGCCA CGTGTAGAGCATGTGACCATCATCTTGTGTGTGTTCGTCTCAGGTTTGTC TTGATGATGTCCTTGTGGGTGCACCATCCTTGTGTGCCTGCGAGCACCAT CTTTATGCTGAAGTTCGTTGTGCTGACCTCGTTTTACATTAAGCTCTTCG CGACCGGCAGTCGGCAGTGCCATCTTCGTGTGGTGTCGTGTCAATGCACA TAAAGTAGTCGAGTCTATGCGTAGACTACATAAACCCATTGGCGAGCTTC GGATGTAGACTACGTTTTGGAAAGTTCACTTCCACTTTTTACGGAAAAGA GCTGTAAGGGTGTGTCGTATCAGCAGAATCGAAACAAAAAATTAGAATCG AGTTTCAGATTAAGTCTAGAACGAGCCAGCCAAATTCGACCTACGCGTCT CATCGAAAAATTAGCAAAACTGAGGTTCAAATCGAGAACACGCCCGAACG GACGCCGACCAGCCCAACAGTCCCGACAGGCGGCGTGGGCGACCTGCGGG CGACGGTTTGTCCTTTTGCACAACACTCGCACAATCATGGCTCGCTCTCC TCCCCGCCGTGCGGGCAGCCGCTCGTGGCAGCGAGGGAAAACGAACAAGC GTATAGGCAGCTCCTGGAGCTGGTGGTGTACCCCAACCCACCGATGGCAC GGGTGGCACATGAATCCCGACTCTATTGCTCGGCGCACGCCATTGGCAAA TCGGCAACAAGTTGAACCTGCCGTCGCCGTTCGCCTGCTGTGACATCATC TTTCTGCTTGCTTGGTGGGCGCGCGTGGTGTAGCGTGTGCAATCCGCGCG CACGTGGGCGCGCAGCGTGCGAGATGAAAAACGTCAACCGCCGCAGCACG CTCCCAACAGCCCAACGTCCACCCGAAGTTGGTTGCGTTTGGCAATAGTC AACTCCCAATTAATCCTCTGGCCATTTTTTCGAGATCAAGTTTAGGAACA GGAAGATCCGTTCGCTTATCCCGAAAGAACGCATTCCAACCAATCAGAGC AGATGGACGCTGACTCTTTTTAGTCTTAAACTGAAACTCGATTCTGATTT TTAACTTCGATTCCGCCGATAAGACACACCCTTATGGCCGCCATAAAATA TGAACTTTCGACGCTAAATAGGAAGAACTTTTAAGCACGAAGGGCAGCTG GCGTCTATTAAAGCTCAACTTTTTCAAGTTTTTTCATCTTTAGCTTGTAG CTGTTTTGGTCAACACCACGCCAGGATGGGTGCTGTTGCACACCTCGCCC CACCACCGTATGCCCGTGGTCGGTCGTAGAGCTTACTGCCAGCAGTGGGA GGACTCCTGCTTCGGCGCTGACGAAGGTTGTAGACTTGTCAAATTGATAT CGAGCCACAGCTCGCTCATGTTTGTTTCGAACACACACACACACGCCCAC AGCAGCAGCGGCTGCATCGATCGCCCAACACGATGTACAATAATAGTGCA GCATGATCCACAACAAATCCTAAGGCATCTTGCTCCCTTGTGCGTTGTTG GCTCTGGCTTGGAGATCGGCGGGATGCGTTGCGAAAGAGCGACGAGCGTT TGGGCGTGCTGCGTGCGTTTGTTGCTGCGTGCGCACACCCTGTCTGGATG GGTGCATATATGCATTCCAGCTCGAAAACGTCGCGTCCTCTCTCACAGGA CGCTCACAACGCTCCACTCAGACCCATCTCGGTTGGTGGCAAGGTATACC TCGGAGCTGTGGAGCACACAGCGTTGAAGGTTTCACCCGAATGCAAGCAT CTGTTTGGGAGATATGGTGACTTGGTTGCGGGCCGTGCTGATGAAGATTC CCTCATGGTGACATCGTGACATCACATCGTTAAAAGTAAAACCTTCGGAA AAAATCGGGACTGGTCCCAGGAACGGTGCTGTTGAGAGTGAAAGTGAACT TTTGCCAAGAATGCTTCCGAAACCGTCTGATTTTGAATTTTCGTAGTTTG TTTTGCCGTCCGTCAATGTGAACTGGCTCGCCCGACCCACTATTTACATA CATTTTCCCCGCCTGACGCTGGCTCTATATCCGTACTTAATCCAATACAC AAAAAGAAACAACCCTTCCCGCAACCTTCCAGCCATTTCTAACTGTACCT ACGAATTGTTATCAGTGGAGGACACCATGAAGCGCTTGTGTGTGCTGGCA CGTTCAGGTTTGCTTCTTGGGTGGTGATGTCGAGGATCGTAGTAATGGCC TCCACGAATCTCCGCAAATTAGACCGGCACCCAGTGACTTGTACTGCTTG TGCTCGCCGCCATTGACCCCAATCTCCTGCGCGTCCTCAGCGGTAGCTGA TGTGTTTCGGTCAATTTGCGGGGATTTGCGGACATTGTATGCTACAGCAG TAGGCCATTACTACTGTACGATCCTCGGTGTCACCACCCAAGAGGAAACC TGAACGTGCCAGCACACACGGCACCTCTTCATGGCGTCCTCTACTAAATA CTAGCAGTGCTTGGGTACAGTTTGAATGCTAAATTGACCTCCTTGAGCCC CTGGCGTTTTGGCTCTGTTGACTTTATTTAATGTAGACTGGTGTGAATTT TTGTCGTGACTTCAAAGGGGGAGTTTAAGGGAGACTCGTGATCTAGATGT TTTGAGCAGCCTCTGCTGCCCCCCGTGCGAGAATCAACGATTTCTTTTGT CCCGATGCCTGCCGACTGTTCTCGTATGTCTCGTGCGCATTTTCTGGTGC TCTTGCGGTTACTTTCAAAATCAGCAGACACTTTGGTCGACCATCAAAAG GTTGGGTTCCTTTCCTCGACAACTAAAGAACTCCGATCAGATATCACACG AAGAATAATAGTTCCTCTGAGGTGGAACAAGCGCGTTCCATCACTGGAGG CTTGAACAACTCGGAATTCATTTACCTTGCAAAGAACCGCACTCCCAATA ATAGGCACTAAATAAATGTTTATCCAGGTGGCCGCCTACAGGATACGTAC GACCGTCAATATTGTAGATACGTGGCCTATTCCGTTTAAGGCGACCTACA GATACAGTAACGCCCACCAGAAGAGATGCATTGTTACCCTATTGGAAAAT TTCAAGTATCATGTTCCTTTTTTGCCAAAATCGCAGTGCGCGTGGAACGA TCATAAGTAAAACACAAAAGAGCAACAGCCTTACGGGCGAACAACACCCA GGCAACTCCCGCAAGCCTGCCGCCAACAACAATGTTTGTAAACCATCACC CAAATATATGTTGTGCACAACAACTTTAACCTCCTGCACGCACAACTGGG CACGCTTACCCCGCAGGCAAGGCGAGATGCCCTCAGCCCCGATGACGCCA CCAGTACAGTTGCCGCGACTGCAGGCGGCACAGGGCGAGTAATCCAGCTT AGGGCGACGGAGAGTGACGTCAAGGCGGCCGCACGCCACTGCGTCGCCGT GGACGAAGTCGGACGTTTCCCGGCAAACCACGCGCTCGGACTCTTCGAAA CTGAACCCGGACGATTGGTACTGGGCACTCCTCGAGTCACGGACGCATCG GTGGAATTCTCTGCATTGCCGCAACGACAAAATGCTGGTGGTAGCAATAG TGATGAAACACCAGCCACCGGCACGATCGTATTCAAGGTGGTGCTGGAAG TCGACAATACGGGACGATGGAGAGAAGGAGGAGGTGGTACAACCTCTGGA AGAAGAACCGGCGAGCCCGTTCCGACAGGAGAGGGTATGGAGATGACGGC AGCTGCTGCGACCGCAGCGACTGCAGAAAACCCCGCGGAGGCGCAGATGG CGATATCAGCCCTGGCCGCTTGGAACCTGATGACGACACGGGAAACACCG GCTATGTTGCCGATGATCAGGGTAGAGGTGGGAGCCGCGTTCGGGTATCA CGGGGACTGGTACACGGCCAGCAAGACCATACCCCTCACTTCCGACGGCA CCGGCCACAGCAGTGCTTTGCTTTCGAGCGCGACGTTCGACTGGCAGCCC GCACCAGATGTCTGGAGCAAGCTCGACGAACCGATGGCAGCGGACGTGAG AGTTTATGGCACCGCGTCGACGCCCACGGAAGAACAGGAGGCAGGGCTAT TGTTGTTGCGAGGCACGCTGTGCAAGCGAGCATCGGGCTTCGGAGGCCGA AGCACGCGCGACGAAACAACACAGGGCACCATGAAGGCGGCCTTGACGCC TTACGCCGAACGCCTTCCAGCGGTTGCCGCCGAAGCTGTCGCGATCAGCC CCTCTCGGCCTTCCGTTGTCGTTTCCGAAATACGAGACGAAGAGTGGTGG AGAGCCCGCGAAGAGGAGGAATCCGGGAGAGGGATGGATGCGGTCGACGC GCTGCCCCGCCTGCCCCGGTGGAAACCCGGGGATTGGAAGAAAAGACGCA GGAGAAGGAAGAGACAGGAAGAGGAAAGAAAAAAACAACGAGCGCAGGAG GCCGCTCGCCGAAGAGCTGACAAATGGGGGGGTGACAGAGGACGTGACAC GGCCAGTCGCGACGGACGGAATCGCAGGGGTGGTGGTAGGGAGGCAAAAG TCGGACGGTCACCATGGGGGGCTGTGAAAGGGGCTTGGCGTGCTGTCGGG CGAGGTTGGCGAAGAGTCCGGCGGAAATTCCGAAGAAACTGCAGTGAGCA TAGTGCTCGTCGGACAAGGTAGAAATTTGAGATATGTAAGGGGGTTAGCG ACGGGTTGCTGCGGAAGTATCCTTTATTGCGACAATGGTCACAGGTTGGG TATTGGCAGTCTGTACACCATGTTCCGTCGTCAACCGGCGTCTATTTGTA ACGAGTACAACCTACAATCATAAGATATTCTCTTCATGTTATCTGCTCAA GAGATTCTGCCCGACGTCAAGCCCACCTACCGAGATGCGCATTACGCCTA GTCATTGCTGGTTCACGTCTAATGAGCCTTCATGTGTAGCTTACGTTCAC GGCCTTCGACGAGCAACGTTGCCCGCCTAATTCTTCTCCTTTTCCGGCCG TGTTGTAGGGCAACCTGGAAGGGCTGCTTGACAATTTTCATTGGACAACC GACCGAATGTACACGGCACCATTTATCTCCACCCACGCAGAATAAAGCCC ATATTTTGTGTCACGAGGGTATTTTGTTGCGTGTTCCCCTTGGCCAAAAC CTGTCAGGTACATATTATATGAATA
back to top

Coding sequence (CDS) from alignment at Scaffold_417:147269..152543-

>EsuBft1031_5a-0001 ID=EsuBft1031_5a-0001|Name=EsuBft1031_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1431bp|location=Sequence derived from alignment at Scaffold_417:147269..152543- (Ectocarpus subulatus male Bft15b)
ATGAGGCGGACGACCATAGCCATACTATTCGTTCAAGTACTGGCCCGATT
CAGCTGTGTTGCAACTATTCTTGAGGCAAGGCGAGATGCCCTCAGCCCCG
ATGACGCCACCAGTACAGTTGCCGCGACTGCAGGCGGCACAGGGCGAGTA
ATCCAGCTTAGGGCGACGGAGAGTGACGTCAAGGCGGCCGCACGCCACTG
CGTCGCCGTGGACGAAGTCGGACGTTTCCCGGCAAACCACGCGCTCGGAC
TCTTCGAAACTGAACCCGGACGATTGGTACTGGGCACTCCTCGAGTCACG
GACGCATCGGTGGAATTCTCTGCATTGCCGCAACGACAAAATGCTGGTGG
TAGCAATAGTGATGAAACACCAGCCACCGGCACGATCGTATTCAAGGTGG
TGCTGGAAGTCGACAATACGGGACGATGGAGAGAAGGAGGAGGTGGTACA
ACCTCTGGAAGAAGAACCGGCGAGCCCGTTCCGACAGGAGAGGGTATGGA
GATGACGGCAGCTGCTGCGACCGCAGCGACTGCAGAAAACCCCGCGGAGG
CGCAGATGGCGATATCAGCCCTGGCCGCTTGGAACCTGATGACGACACGG
GAAACACCGGCTATGTTGCCGATGATCAGGGTAGAGGTGGGAGCCGCGTT
CGGGTATCACGGGGACTGGTACACGGCCAGCAAGACCATACCCCTCACTT
CCGACGGCACCGGCCACAGCAGTGCTTTGCTTTCGAGCGCGACGTTCGAC
TGGCAGCCCGCACCAGATGTCTGGAGCAAGCTCGACGAACCGATGGCAGC
GGACGTGAGAGTTTATGGCACCGCGTCGACGCCCACGGAAGAACAGGAGG
CAGGGCTATTGTTGTTGCGAGGCACGCTGTGCAAGCGAGCATCGGGCTTC
GGAGGCCGAAGCACGCGCGACGAAACAACACAGGGCACCATGAAGGCGGC
CTTGACGCCTTACGCCGAACGCCTTCCAGCGGTTGCCGCCGAAGCTGTCG
CGATCAGCCCCTCTCGGCCTTCCGTTGTCGTTTCCGAAATACGAGACGAA
GAGTGGTGGAGAGCCCGCGAAGAGGAGGAATCCGGGAGAGGGATGGATGC
GGTCGACGCGCTGCCCCGCCTGCCCCGGTGGAAACCCGGGGATTGGAAGA
AAAGACGCAGGAGAAGGAAGAGACAGGAAGAGGAAAGAAAAAAACAACGA
GCGCAGGAGGCCGCTCGCCGAAGAGCTGACAAATGGGGGGGTGACAGAGG
ACGTGACACGGCCAGTCGCGACGGACGGAATCGCAGGGGTGGTGGTAGGG
AGGCAAAAGTCGGACGGTCACCATGGGGGGCTGTGAAAGGGGCTTGGCGT
GCTGTCGGGCGAGGTTGGCGAAGAGTCCGGCGGAAATTCCGAAGAAACTG
CAGTGAGCATAGTGCTCGTCGGACAAGGTAG
back to top