EsuBft1022_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1022_7a-0001
Unique Name	EsuBft1022_7a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_103	contig	Scaffold_103:270285..272298 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1022_7
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	177
Hectar predicted targeting category	no signal peptide or anchor
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1022_7a	EsuBft1022_7a	Ectocarpus subulatus male Bft15b	gene	Scaffold_103 270285..272298 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1022_7a-0001-exon	EsuBft1022_7a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_103 270285..270849 +
EsuBft1022_7a-0001-exon	agat-exon-79161	Ectocarpus subulatus male Bft15b	exon	Scaffold_103 271086..272298 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1022_7a-0001-cds	EsuBft1022_7a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_103 270285..270437 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1022_7a-0001-exon	agat-three_prime_utr-229	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_103 270438..270849 +
EsuBft1022_7a-0001-exon	agat-three_prime_utr-230	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_103 271086..272298 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1022_7a-0001	EsuBft1022_7	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_103 270285..270437 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_103:270285..272298+
coding sequence from alignment at Scaffold_103:270285..272298+

spliced messenger RNA

>EsuBft1022_7a-0001 ID=EsuBft1022_7a-0001|Name=EsuBft1022_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1778bp|location=Sequence derived from alignment at Scaffold_103:270285..272298+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCCGAGATCGTCGACAGCCTCGCCTTCTCCTCCAGCCGCACGCTT
CGCCTGCTTCGGCGGCGGTATCCGTACCGTCATCTTCAACGAGCCTCCCG
CCCTGCTGCTGGTTCTGCTGCTGCCGCCGTTGATGCTTCGAGTGTTTGTT
TGAGGGATAGGATGGGGATGCCTTCAACATCGATGTCGATGGTGACGTCG
ACGAAACAGAAACTAACGCTTCTCCGCCATGTGCCACGTAGACAAGAGCT
GCTGTGTGGAGCCGGAGAATCGCATCGCGCGCGTCCTCTCCTCAGAAAAT
TACAGCGAAGGCGCGCGTTTGTTGACCTTGCTCGTGTATGTTTTTGTGTG
TGTTTTCGTCCTATTTATTATGGTGACAGTCCCCCCATTTTTCGTGATAA
GACGTGTACTACACTTTTCAGCGTAAACAACATATTATTATTATTTTATT
TGCCCTCCGACGATTGCAGATAAATGCAGACATACATAAAAAGTCGATCG
TGAAGGCCGTCATGCCAAGCCAAATTAACTCGATGCCCAATAGCCAGGAA
TGTTTGCCTCTAAAATCAACAAAACTTTGGTTGAAACACTACAGCTGAAC
TCTAGGCACGAACCATAGATGGAGAAAAATGAACAAAACCCCAACCTCAT
CCACCCGAAATCAAACAAAACTCGACCGCGTCTTCTCTGGTACCCCTGAC
ACCGTATCGAACAAAAATCCGCTTCCTACCGAAGTGGTTAGGTTAAAGCT
GTCGCACGCATATTTCGGCGCGCAAAAGTCTGTGCGGCATTGCTGATCGA
TACTGCCACCGGTCACACTAAGAGAGAAACATCCGCCGTCTTGCTCTTTC
TGAGGCACCCCCCACTCAAGCCCACGTTTCCCCAGACCTCCGACACTGCC
ACCCCTTGTTCCTACTTGCTCGCCACCTGCAACCACAAGGGTCAAGCCCT
CCCCCCTCAGCACCCCATATTGGTGAAATTGAGAGCGAAGTATGAAATTG
AGAGCGAGAGCCAAAAAAAAAAATCGGGTCCAGACGCCTCTTGCCATTTC
TTGGAAAGTAGGGGGGGCGGGCTCTTCCAAGAAGCGGCGCAAATTGAAGG
TCTCATCAGCAGCGACACGAGCATATGCATGTCATCGTCATCGGATGCTG
CAGCTAATAGGAGCTAGACAAGTGCTAGATTTCCCCAGATTGGCTATTCC
TGCCTCAAACTGTTGCAGGGCGGTATGGCCCCGGGCGGTGGGCTCTGCTG
AAGCTTCTGCTCGCCGCTGTAACTCCACATCGAGAGACTCCCACAGGATG
ACCAGGGTATCTGCTTGCAGCTACGGGCTGGCCCTTCAATTCAAGCTACA
CAGCAAGCTCCGCCTCTCAGCAGTAGTCCAGCTGCAGCGCATCGTGCAAT
CTCGCTCTCAATCAGATGCTTCGCTCTCAATATCACCTATGTTGCTGTAT
GTAGAGTCCGTCCGGTTAAATTTTGCCACCATCTCCTGAAATCACCTTGG
GAATTGTTTTGAGTGACTGACGTACCCCCTAGTGACATAGTACTTTATAT
CGTAAGAAAGCTCTGTTTCCGGCGGATCGTTTGGATGGAGCAGATTTTCT
TCTTTTTTTTGTTGGCGAGAAAATCACGATTCCGTGGAGATTTTGGACGA
TTTTGGTTAGTTTTATTTGGTCGAGTGTGAGGTCATATATTTTTTTTTAG
ACCGGTTTTGAACGTATCACGCCCAGGGGCTCACGGCGACACAACTCAGC
TTTATTTTCGCTAATAAACAACGGAGAT

protein sequence of EsuBft1022_7a-0001

>EsuBft1022_7 ID=EsuBft1022_7|Name=EsuBft1022_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=50bp
MTPRSSTASPSPPAARFACFGGGIRTVIFNEPPALLLVLLLPPLMLRVFV

mRNA from alignment at Scaffold_103:270285..272298+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1022_7a-0001 ID=EsuBft1022_7a-0001|Name=EsuBft1022_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2014bp|location=Sequence derived from alignment at Scaffold_103:270285..272298+ (Ectocarpus subulatus male Bft15b)
ATGACGCCGAGATCGTCGACAGCCTCGCCTTCTCCTCCAGCCGCACGCTT
CGCCTGCTTCGGCGGCGGTATCCGTACCGTCATCTTCAACGAGCCTCCCG
CCCTGCTGCTGGTTCTGCTGCTGCCGCCGTTGATGCTTCGAGTGTTTGTT
TGAGGGATAGGATGGGGATGCCTTCAACATCGATGTCGATGGTGACGTCG
ACGAAACAGAAACTAACGCTTCTCCGCCATGTGCCACGTAGACAAGAGCT
GCTGTGTGGAGCCGGAGAATCGCATCGCGCGCGTCCTCTCCTCAGAAAAT
TACAGCGAAGGCGCGCGTTTGTTGACCTTGCTCGTGTATGTTTTTGTGTG
TGTTTTCGTCCTATTTATTATGGTGACAGTCCCCCCATTTTTCGTGATAA
GACGTGTACTACACTTTTCAGCGTAAACAACATATTATTATTATTTTATT
TGCCCTCCGACGATTGCAGATAAATGCAGACATACATAAAAAGTCGATCG
TGAAGGCCGTCATGCCAAGCCAAATTAACTCGATGCCCAATAGCCAGGAA
TGTTTGCCTCTAAAAGTCAACAAAACTTTGGTTGAAACACTACAGCTGAA
CTCTAGGCACGAACCATAGATGGAGAAAAATGAACAAAACCCCAACCTCA
TCCACCCGAAATCAAACAAAACTCGACCGCGTCTTCTCTGGTACCCCTGA
CACCGTATCGAACAAAAATCCGCTTCCTACCGAAGTGGTTAGGTTAAAGC
TGTCGCACGCATATTTCGGCGCGCAAAANCAGGAATGTTTGCCTCTAAAA
GTCAACAAAACTTTGGTTGAAACACTACAGCTGAACTCTAGGCACGAACC
ATAGATGGAGAAAAATGAACAAAACCCCAACCTCATCCACCCGAAATCAA
ACAAAACTCGACCGCGTCTTCTCTGGTACCCCTGACACCGTATCGAACAA
AAATCCGCTTCCTACCGAAGTGGTTAGGTTAAAGCTGTCGCACGCATATT
TCGGCGCGCAAAAGTCTGTGCGGCATTGCTGATCGATACTGCCACCGGTC
ACACTAAGAGAGAAACATCCGCCGTCTTGCTCTTTCTGAGGCACCCCCCA
CTCAAGCCCACGTTTCCCCAGACCTCCGACACTGCCACCCCTTGTTCCTA
CTTGCTCGCCACCTGCAACCACAAGGGTCAAGCCCTCCCCCCTCAGCACC
CCATATTGGTGAAATTGAGAGCGAAGTATGAAATTGAGAGCGAGAGCCAA
AAAAAAAAATCGGGTCCAGACGCCTCTTGCCATTTCTTGGAAAGTAGGGG
GGGCGGGCTCTTCCAAGAAGCGGCGCAAATTGAAGGTCTCATCAGCAGCG
ACACGAGCATATGCATGTCATCGTCATCGGATGCTGCAGCTAATAGGAGC
TAGACAAGTGCTAGATTTCCCCAGATTGGCTATTCCTGCCTCAAACTGTT
GCAGGGCGGTATGGCCCCGGGCGGTGGGCTCTGCTGAAGCTTCTGCTCGC
CGCTGTAACTCCACATCGAGAGACTCCCACAGGATGACCAGGGTATCTGC
TTGCAGCTACGGGCTGGCCCTTCAATTCAAGCTACACAGCAAGCTCCGCC
TCTCAGCAGTAGTCCAGCTGCAGCGCATCGTGCAATCTCGCTCTCAATCA
GATGCTTCGCTCTCAATATCACCTATGTTGCTGTATGTAGAGTCCGTCCG
GTTAAATTTTGCCACCATCTCCTGAAATCACCTTGGGAATTGTTTTGAGT
GACTGACGTACCCCCTAGTGACATAGTACTTTATATCGTAAGAAAGCTCT
GTTTCCGGCGGATCGTTTGGATGGAGCAGATTTTCTTCTTTTTTTTGTTG
GCGAGAAAATCACGATTCCGTGGAGATTTTGGACGATTTTGGTTAGTTTT
ATTTGGTCGAGTGTGAGGTCATATATTTTTTTTTAGACCGGTTTTGAACG
TATCACGCCCAGGGGCTCACGGCGACACAACTCAGCTTTATTTTCGCTAA
TAAACAACGGAGAT

Coding sequence (CDS) from alignment at Scaffold_103:270285..272298+

>EsuBft1022_7a-0001 ID=EsuBft1022_7a-0001|Name=EsuBft1022_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=153bp|location=Sequence derived from alignment at Scaffold_103:270285..272298+ (Ectocarpus subulatus male Bft15b)
ATGACGCCGAGATCGTCGACAGCCTCGCCTTCTCCTCCAGCCGCACGCTT
CGCCTGCTTCGGCGGCGGTATCCGTACCGTCATCTTCAACGAGCCTCCCG
CCCTGCTGCTGGTTCTGCTGCTGCCGCCGTTGATGCTTCGAGTGTTTGTT
TGA