Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D8LNX6 |
| ProteomeId | EsuBft1022_6 |
| Protein domains | G3DSA |
| Protein domains | PTHR22915 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | external alternative nad h-ubiquinone oxidoreductase mitochondrial os:arabidopsis thaliana gn:n [Automatic annotation] |
| Nb exon | 6 |
| Max annot lvl | 2759|Eukaryota |
| Length | 991 |
| Hectar predicted targeting category | other localisation |
| Evalue | 4.4e-32 |
| EggNOG OGs | COG1252@1|root,KOG2495@2759|Eukaryota |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| KEGG ko | ko:K03885,ko:K17871 |
| KEGG Pathway | ko00190,map00190 |
| EC | 1.6.5.9,1.6.99.3 |
| Description | Oxidoreductase |
| COG category | C |
| BRITE | ko00000,ko00001,ko01000 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0005777 |
| GO | 0006116 |
| GO | 0031314 |
| GO | 0003954 |
| GO | 0001300 |
| GO | 0009536 |
| GO | 0005758 |
| EC | 1.6.99.3 |
| GO | 0019655 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1022_6a-0001 ID=EsuBft1022_6a-0001|Name=EsuBft1022_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=991bp|location=Sequence derived from alignment at Scaffold_103:264128..268530- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GCTGTTGCCGATCGGGCGATCGACACGGCCCAAGATATCTTGACGCACCC
CTCACGCGCCTTCATGCCGGCCGCCAAGATGAATCTGCCGCTCACCACTG
ACGGCATCGAGGATCCGTCGTGGCTGCCGGCCACCAAGAAGGAGCGGATC
GTCGTGCTGGGCATGGCCACGCCACCAGCAAGGTGGTGGTTGAATTGGCA
GCAAAACAAGCGGGAAGATCGGCAGCGACCGGTGAACCCCGACGATGCGA
GGCTTCTGATGGAGCTCTCCTACGACAAACTGGTGTACGCCATCGGAACA
GGAACGGGGACCTTCGGGGTCCCGGGGGTGCGAGAGAACTGCTACATGCT
CAAGGAGGCAAGCGACGCGCGACTGCTACGCGCCGCGATCGTTAACGTCC
TTGAGGAGGCGTGCTTGGCCGGGATGACGGACGAGGGGAAGGAAAAACTG
TTGTTCTTCGTGGGTAAGGGGTATTGTGGTGCGCCGTCACAGAACTTTCA
GAACTTTCGAGTTCTGTAAGCGAGCTGTCACAGAAAGTTCGGTAGGGTAC
TGGGGTCTGTCACAGAACTCACAGAGAAGTTCGGTAGGGTACTGGATCTG
TCACAGAACTCACAGAACTATAGGGTATTGTGGTGAGCCGTCACAGATCT
CACAGAACTTTCGAGTTCTGTAAGCGAGCTGAATGTTCTATTGGCTGTCC
GATACTCGACACATATTAATAAAGGTTGCTATGCGCGACGACATGCAGCG
AAACTCTTGATCATTTCATTTGGAAAACCCCAACAACAAACGTCACTATT
CCCCAAATTCTACTCACGTGTCCCATTGCCTTCATGTTTTTGTTGGTGAT
GAGGTGCCTCACGCACGCACGCCATGGCGCTTGCGGTAGAACCGCCCTGA
GGGCCGCCGGTGATCCTTTGTGACCGTCGATGAAGAACGTCACCTCGCCG
AACGAAAGAAGTCGATGCATGTGCTCGTTCCCGCAGGTCTG back to topprotein sequence of EsuBft1022_6a-0001 >EsuBft1022_6 ID=EsuBft1022_6|Name=EsuBft1022_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=151bp
MPAAKMNLPLTTDGIEDPSWLPATKKERIVVLGMATPPARWWLNWQQNKR
EDRQRPVNPDDARLLMELSYDKLVYAIGTGTGTFGVPGVRENCYMLKEAS
DARLLRAAIVNVLEEACLAGMTDEGKEKLLFFVGKGYCGAPSQNFQNFRV
L back to topmRNA from alignment at Scaffold_103:264128..268530- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1022_6a-0001 ID=EsuBft1022_6a-0001|Name=EsuBft1022_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4403bp|location=Sequence derived from alignment at Scaffold_103:264128..268530- (Ectocarpus subulatus male Bft15b)
GCTGTTGCCGATCGGGCGATCGACACGGCCCAAGATATCTTGACGCACCC
CTCACGCGCCTTCATGCCGGCCGCCAAGATGAATCTGCCGCTCACCACTG
ACGGCATCGAGGATCCGTCGTGGCTGCCGGCCACCAAGAAGGAGCGGATC
GTCGTGCTGGGCATGGCCACGCCACCAGCAAGGTATGTTTATATCGCTGT
CTGGCCACTGCCAGACACAACAATCAAGTTCTCCGGGCTTGGTTTCATTC
ACGGCATTCAGGGTCGAACAAAGGAATGAATGCTGCAAGTTCCCGGATTG
GCATGCCATTTTCGGTCTAACCAAGAGAATGGGGGCCCTTTGGACGCTCG
TGTAAGGGTATGCTGTTATTGGTGAAGTCGAAGCCGCAACTGTAGTGCTT
TCTACAGCATGCTTTTTATAGCCATGTGGATCATGCGTTGTGGAGAGATA
ATCGTCTGTCCTGGGGTATCACGCTATCAGCGACGGGGATGGAAGCGGTT
GAAAGTGTCACGATTTCGTGGTTACTACTGTATTTTGTTGTTACCTGCAA
TACATTGCTGCATTATTGTTGCTTGCCTTGAGCATTTGACCGTTGCCAAA
TCACATCACCTTTAACAAGGGGCTTGTAGGCGGTCACGGGCTTGCTGGTG
TAGCTTTTGCGAAACGATCGAGAGGCATTCTATTGCTTTGTGCTTTGTCG
TTCGGGCATTTTTTACACGCCACGGACGTGCAAGCGGGGAAGGGCGAGGA
GTGCACACACGTTTGCTGTTGTGTTTCTTCGAACGACTGACGACAAGAGT
CTGAAGATGAAAGGCCAAGGAACGCAGGCTGGGTTCATTACTGAAGCCTA
ACTTTTGAGACACCTATCGCGGTTCCCTGCTACCTCTTTCGTAATTTACT
TGTGAGGCCAAGGTAATCGACAGTGACGTGTACGAGGTGATCTACGTCTC
GCCCCGTAACTACTTCGTGTTCACCCCGATGCTGGCCGCCTCGGCCGTCG
GCACCGTCGATGTAAGGTCCATGATGGAACCGATCAGGATGGCCAACCCC
TGCGTTTCATACGTGAGCGGGGAGGCCATCGACATCTTCCCCCGAGACAA
GATAGTCAGAGTTAGCGATTTAGGATACCGGCCTTGTGTGTTTTGTGAGA
TGTGTGCGACGTTTGATGCGAGATAAGTATGGATGTGCATCCTCGTGCTT
TACCGTGTTCGTCGTCGTGCATGTTTCGCTTCCCTTCGGGCACCCTCTGT
TGTGTCCTTAACATTGAAGCAGTTCCGAGTTCTATCCAGGTGTGCGTGCG
TGTGTGTGTGCATCATATTGTTTCCAGGCAACGACTTCAACTCTCGCTTC
TCTAGTCCCGTTGCCACGTTTTGGTTGCTTGTGTCTGCCCTTGCATGTAC
ATGCGCGAATGTGTATGGCAGGTGGTGTAAGCCCTCCCTTGTCCACGAGA
GCAACACCCACCTCAAGCCATAGAAAGTGCCGGCGCTTTGCCCCCCCCGC
TGTACACGAAGGGCAACCGGAAAGAAGCCGCAACGGCAGGGTTGAATTGG
CAGCAAAACAAGCGGGAAGATCGGCAGCGACCGGTGAACCCCGACGATGC
GAGGCTTCTGATGGAGCTCTCCTACGACAAACTGGTGTACGCCATCGGAA
CAGGAACGGGGACCTTCGGGGTCCCGGGGGTGCGAGAGAACTGCTACATG
CTCAAGGTGTGTACCGAGAGTATTCTGCCTTGCATCTCATGTTGGCCGCT
GGTAAGGACAAACGCCAGTACCGCAACCGCTCTGGTTCGCTTGTCTCGCT
TATCTTCGCTTTCTTCAGGCTCCGGCGCGCAGGGCGGGGAGCGATCATCG
TGTTCATGAGCGCCTGCGGGCCCCCCCCGGTCCTACGTGCTTGCTACGGG
GCTCGCTTCACAGAAGTAGCTCGAACAAAACCGATCTCAACCCTCCATGC
CCTTTCCTTGATGATCATGTTTGGATTGGTTCGAAAACAGGAGGCAAGCG
ACGCGCGACTGCTACGCGCCGCGATCGTTAACGTCCTTGAGGAGGCGTGC
TTGGCCGGGATGACGGACGAGGGGAAGGAAAAACTGTTGTTCTTCGTGGT
AAGAGAGGACCACTGGGCTGATGGTTGGTGGAGAGCAATGGTCCGGTTGG
TGGAGTACTGTGGAGGTTTGGTTTTCAGTCTCGAGGCAGCTGTCCCATGC
TCTGTCATACGACAACATGCAGAAAAGTAACTGGAGGGGAAACACCGCTG
CTATGAGATGGGCTATCGTTCAGCGACTGGGGGCAGCTGAATAGTTTGCC
GAAGCCACTTGTGGTAGATAGGTTCGAAGATTGCGATGATGACTTCTCAG
GCCGTGTTTGTTTTTTTCGCTGGGATGTTTTCAAAGTGAACCAAACTGCC
GGAGAAGGCGGAAGAAAAGCCGTCTGATACCGCCAACGTTTGCCCAGCTC
ATTCAGTTTTGGCTGTCGCTTCTCGCTCTGTAGTTATGTGCTGATCCGCG
ATCTCACAGCAGTATCACCAACTGACGCCAACGTCTGGATGCTGAGAAAC
TAAGGCATTGCTTCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNATCGGTGTTTGCCATCGGGATTGGGTTTTCGTCGCTTGGCAACGACGG
TATAAACAAGCCAATTCACGTCGTGAGCTCGGAATCCAGGTTACCGTTCT
GTTTTTTTCCTCTGCTTTTATATTGGAGGCCATTTGTTACGATGTCTTTT
TTTAGGCTGCCCTTTTTTCCCAAAAGAGACGTCCCTTTGCGCGATGCAAA
GAAGCTGCAGTTCATGAGACTGCACCATCCCTCACACCCTAACACGTGAT
CCGCTCAAACTACGCGTGAAGCGTCGTCGCAAGTAGCACACGACGTGTCC
CCCAATATACGGTACATGCGGTTTGCGAGAAATGGGCTGAAATTCCAACG
ACGAGGCAATATTGTAGCAAGGAAGAACTTTCCGGCTCTCTGGGGGGTGA
TGGTCAAGTTTTCGAGTTGGGCCAGTGCCTCATCGTGTGCACCTGGACTC
CACTAGCAGGGAAATGTTCCACGAGTAGGTTCTGTAGGGTAAGGGTACGT
TCGGTAGGGTACTGGGTCTGTCACAGAACTCACAGAAAAGTTCGGTTGGG
TGCTGGTTCTGTCACAGAACTCACAGAACTATAGGGTATTGTGGTGCGCC
GTCACAGAACTTTCAGAACTTTCGAGTTCTGTAAGCGAGCTGTCACAGAA
AGTTCGGTAGGGTACTGGGTCTGTCACAGAACTCACAAAACTATAGGGTA
TTGCGGCGCGACCTTCACAGAACTTGTTGTTGTTGTTGTTGTTGTTGTCG
GTGAAACTGGGTATCTTCCGGAGGGTACTAAATAGGGTAGGTTCTGTAGG
GTAAGGGTACGGTAGGGTCTGTCACAGAACTCACAGAGAAGTTCGGTAGG
GTACTGGATCTGTCACAGAACTCACAGAACTATAGGGTATTGTGGTGAGC
CGTCACAGATCTCACAGAACTTTCGAGTTCTGTAAGCGAGCTGAATGTTC
TATTGGCTGTCCGATACTCGACACATATTAATAAAGGTTGCTATGCGCGA
CGACATGCAGCGAAACTCTTGATCATTTCATTTGGAAAACCCCAACAACA
AACGTCACTATTCCCCAAATTCTACTCACGTGTCCCATTGCCTTCATGTT
TTTGTTGGTGATGAGGTGCCTCACGCACGCACGCCATGGCGCTTGCGGTA
GAACCGCCCTGAGGGCCGCCGGTGATCCTTTGTGACCGTCGATGAAGAAC
GTCACCTCGCCGAACGAAAGAAGTCGATGCATGTGCTCGTTCCCGCAGGT
CTG back to topCoding sequence (CDS) from alignment at Scaffold_103:264128..268530- >EsuBft1022_6a-0001 ID=EsuBft1022_6a-0001|Name=EsuBft1022_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=456bp|location=Sequence derived from alignment at Scaffold_103:264128..268530- (Ectocarpus subulatus male Bft15b)
ATGCCGGCCGCCAAGATGAATCTGCCGCTCACCACTGACGGCATCGAGGA
TCCGTCGTGGCTGCCGGCCACCAAGAAGGAGCGGATCGTCGTGCTGGGCA
TGGCCACGCCACCAGCAAGGTGGTGGTTGAATTGGCAGCAAAACAAGCGG
GAAGATCGGCAGCGACCGGTGAACCCCGACGATGCGAGGCTTCTGATGGA
GCTCTCCTACGACAAACTGGTGTACGCCATCGGAACAGGAACGGGGACCT
TCGGGGTCCCGGGGGTGCGAGAGAACTGCTACATGCTCAAGGAGGCAAGC
GACGCGCGACTGCTACGCGCCGCGATCGTTAACGTCCTTGAGGAGGCGTG
CTTGGCCGGGATGACGGACGAGGGGAAGGAAAAACTGTTGTTCTTCGTGG
GTAAGGGGTATTGTGGTGCGCCGTCACAGAACTTTCAGAACTTTCGAGTT
CTGTAA back to top
|