Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FSK2 |
| ProteomeId | EsuBft1022_5 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 6 |
| Max annot lvl | 2759|Eukaryota |
| Length | 168 |
| Evalue | 8.96e-53 |
| EggNOG OGs | 2E2RF@1|root,2S9YA@2759|Eukaryota |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| Description | Plant transposon protein |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1022_5a-0001 ID=EsuBft1022_5a-0001|Name=EsuBft1022_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1686bp|location=Sequence derived from alignment at Scaffold_103:259633..263006+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCCTCCACACGACGTACTGGCCTGCGTGACCATACTCGGCAGGGGCAA
TTGCTTTGCAAGCATCTACCAGATGTCGTGGATGAGCGCGAAGACCGTGC
TGATGTTCCACAAGTTCTGCAAGCACTTCGCACGGGAAATGTACGATGAA
CACATCTACCTCCCGCCGGAACAGAGCGGCGAGCTGGACCACGTCATGGA
GCGGTACGACCGGCTTGGGTTTTCGGGCACGATGGGCTCCATGGATGTCA
CGGTTAATCACGCTGGCCGTGCAATTGCCGTGACCGAGGGCTTCACCGGC
TCGACGAACGACAAGACCATCGTCTGCTGGGATGCCGCGGTCGAGAAGAT
TCGGACGGACAAGCAGTACACGGAGAAGGCCTTCGACGTGTACAACGAGG
ATGGCACGACGACAACGCTCAAGGGGTGCTACTTGCTAGTCGACAACGGG
TACCACAAGGTATTCTCCAGCCGCCATGCCGCGAAGGTCGCCGTAGCCGC
TGAGCTTGCTGCCACCTGCCGTTCCATGAAGAATGGAAAGGGTGCCGGCA
GTCGGCAAATTCACCTGGTTTGCAAGACTTGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNATCATGAAAGGAGGAGCGAGCGG
CAGCGCAGGAGCGGCGACGGCGGGTTTGTCCACCATCGTAGCGCCCGTTA
CCGCAGGGCAGAAGGGGGGTGATTTCAAGATCACCAAGGTAGAGGACTCG
CATGTGGTACAACCCCTGGTGGACCAGTTGGTTAGGACCAACCCTAAGAT
CGCCGGTCCCGCGATCAAGAGGACCCTGAAGACCGCGGGATTTACCGTCT
CTGACCGGCAATCACAACGCGCGAAGAAGCGCATCGCGACCGCTTCTAAG
GAGGATGAAGCGGGTGCCATTTCGCGTCTTCCATCCCTTTTCGAAGGGAT
CGAGCGCGATTATCCGGGTTCGGTCGCCACCGTCGAGATGAGTCCCGACA
ACCGGTTCGTCAGGAGCTTCTTGATGCTGGGTAAGGCCGCCTACGTCGCC
GCGCACAGTGTCCCCAAGGCGAGTGCATCGCTTTCGTGATTGTCGTGCAG
ACGTCGCTGGCATTTCATTTTCGCTGAGATTTACCAAGCTATTAGGTAGA
AAATGTATTCAAGCCCTGGAGAGCGCCATTGTCCATTGAAAGCCGTGGAG
AGCCACTAAAAAAGTCAAACAATACGTTGGTCACGTCGATGCGCTTTTAG
GTTGAACAGTACGACACAGCATCCTTGAACCCTCTACATCATTTGTTGTC
GATGAATGAACTCGCGGGGGATAGAAGCAGTGTTGTTCTCAAACCCGCAG
CGAGGTTTGCGCAGGCACAAGTGATTTTCATATTCAGGTAACAATCGAGT
GTGCCCTGGCTTTCCAGCCGCACAATATCGAAATTACGACCAGCCATGTC
TCGAGCTCACCAGCAAAGTCGGTTACTATGCATGTGTATTGCAGCGCACC
TCTGAGGACATTTGAGGCTTATACCAAGTGGTCCAAGGAAGGCCATCAGC
AATTGTTCCTCAGCTTGAGACTTGAGCCCCGGGTTGAATTTTGCACTTTG
GTTGGCGCGCCATGTCTCGTAGCGTAATGGGGTCAAGTGTTCATTATGGC
GACAGCAGTTCCCACATTTGTTCGTGGTACGCCGTG back to topprotein sequence of EsuBft1022_5a-0001 >EsuBft1022_5 ID=EsuBft1022_5|Name=EsuBft1022_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=362bp
MPPHDVLACVTILGRGNCFASIYQMSWMSAKTVLMFHKFCKHFAREMYDE
HIYLPPEQSGELDHVMERYDRLGFSGTMGSMDVTVNHAGRAIAVTEGFTG
STNDKTIVCWDAAVEKIRTDKQYTEKAFDVYNEDGTTTTLKGCYLLVDNG
YHKVFSSRHAAKVAVAAELAATCRSMKNGKGAGSRQIHLVCKTXXXXXXX
XXXXXXXXXIMKGGASGSAGAATAGLSTIVAPVTAGQKGGDFKITKVEDS
HVVQPLVDQLVRTNPKIAGPAIKRTLKTAGFTVSDRQSQRAKKRIATASK
EDEAGAISRLPSLFEGIERDYPGSVATVEMSPDNRFVRSFLMLGKAAYVA
AHSVPKASASLS back to topmRNA from alignment at Scaffold_103:259633..263006+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1022_5a-0001 ID=EsuBft1022_5a-0001|Name=EsuBft1022_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3374bp|location=Sequence derived from alignment at Scaffold_103:259633..263006+ (Ectocarpus subulatus male Bft15b)
ATGCCTCCACACGACGTACGGTACACGCAACCACATCACATCACTAATAA
TGACACCGCGATATCCCGTGTGTACATTCCTTGTTGCACTTGCTGGTGCA
GGTACTGGCCTGCGTGACCATACTCGGCAGGGGCAATTGCTTTGCAAGCA
TCTACCAGATGTCGTGGATGAGCGCGAAGACCGTGCTGATGTTCCACAAG
TTCTGCAAGCACTTCGCACGGGAAATGTACGATGAACACATCTACCTCCC
GCCGGAACAGAGCGGCGAGCTGGACCACGTCATGGAGCGGTACGACCGGC
TTGGGTTTTCGGGCACGATGGGCTCCATGGATGTAACTCATATCGGTTGG
AGTAAGTGCCCCTACAACCTAGCCCGTTCCTACATAGGCAAAGAGGGGGT
TCCTACGATCGGGTACTAGGTCACGGTTAATCACGCTGGCCGTGCAATTG
CCGTGACCGAGGGCTTCACCGGCTCGACGAACGACAAGACCATCGTCTGC
TGGGATGCCGCGGTCGAGAAGATTCGGACGGACAAGCAGTACACGGAGAA
GGCCTTCGACGTGTACAACGAGGATGGCACGACGACAACGCTCAAGGGGT
GCTACTTGCTAGTCGACAACGGGTACCACAAGGTGGATGGAAATGACATG
TTATGATTTTGGGTGACCGACGGTAGTGTTTTTGAAGAGGTGTGTGTCCG
GCCTGACAGAAAGAGAGAGAGGGAGAAAGAGAGAGAGAGAGAGAGAGCTG
CCCAGTGAGGTATTTGTTGTCTCGGGAAATCAGAACCTCGGTTGCCCGCT
CTTGAAGTTGACATGAGGTGTGTCATGGCTTTTGGTTTTTTGATAGGTCT
TTCCATTTCACGCCCCTTCGACCTTGAAGACCCTGCCCCCCCCCCCTATT
TCGCAGCATGTTAACAGCGTCGAATCGAAACGTCCGTCCCTCGGCCCTTC
TCCCTTCCCGTTGTCGTTTTATTTTGGGAAAACGACACAACAGGGTATAC
CCTGGTCGAAAAGCGACACACCTGGGTACACAGTCATTAAAGCAGAAAAT
GCGCTCATTTGATTGGTCACCGCCTAATTTCACCCCGGTGTGTCGCTTTT
CGACCAGGGTAAACCCTGCCGTGACCACTTTTCTCAAAAACTGTACCCTG
TTTTCGGAAATGTACCCTGACCTGTCGGGAAATCAGACCCTTTCATCAAT
CATTTCCCCCGCAGGAATCTTCCCAACTCCTTTTCCCCTCCAACCATGGG
ATACCAAACGGCGACTCTTCCTGCCCAATAACAACCATGGCAACGGGGCA
GGAATCAGTTTTCGCCCCTGCGAAACAACACTAACTATCAACTCTTCCGG
TCTAAATCAACAATGGCCGCCGGGCAATACCCCAGCACAACTCTGTTCCG
TTTTGAAACATGCACACACGGGTACGATACCCCGTGGACCACTGCTTGCT
GCAGTGTATATGCGAGATGCACGGGTCACGCTATGAAAGCGAGACCGATC
CTGCATGGTTGACATGCATATATATGGATATATTTGCCAATGTGTCGCGC
TGCGCTGAGCGGGTGGAGGGGAGAGGCAGCACCAGCACACACAGACACGC
CGTTGACATCAATCATGAAAGGAGGAGCGAGCGGCAGCGCAGGAGCGGCG
ACGGCGGGTTTGCCCACCACGGTAGCGCCCGTTACCGCAGGGCAGGTATT
CTCCAGCCGCCATGCCGCGAAGGTCGCCGTAGCCGCTGAGCTTGCTGCCA
CCTGCCGTTCCATGAAGAATGGAAAGGGTGCCGGCAGTCGGCAAATTCAC
CTGGTTTGCAAGACTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNATCATGAAAGGAGGAGCGAGCGGCAGCGCAGGAGCGG
CGACGGCGGGTTTGTCCACCATCGTAGCGCCCGTTACCGCAGGGCAGGTT
TTCTCCAGCCGCCTTGCCGCGAAGGTCGCCGTAGCCGCTGAGCTTGCTGC
CACCTGCCGTTCCATGAAGAATTGAAAGGGTGCCGGCAGTTGGCAAATTC
ACCTGGTTTGCAAGACGTGCACAAGTTGGGTTGTTTAAGGCTGCCTACAG
AAGGGGGGTGATTTCAAGATCACCAAGGTAGAGGACTCGCATGTGGTACA
ACCCCTGGTGGACCAGTTGGTTAGGACCAACCCTAAGATCGCCGGTCCCG
CGATCAAGAGGACCCTGAAGACCGCGGGATTTACCGTCTCTGACCGGCAA
TCACAACGCGCGAAGAAGCGCATCGCGACCGCTTCTAAGGAGGATGAAGC
GGGTGCCATTTCGCGTCTTCCATCCCTTTTCGAAGGGATCGAGCGCGATT
ATCCGGGTTCGGTCGCCACCGTCGAGGTAAGTGTTTGATCGGGACCCTAC
TGTTCAATATGCACGTGATGCAGCCGTGCAAGGTTGGGCAAGGACTCCAG
ACAACAGCAATACCACATGTACCCTAGCATGTTGTAGATGTGCCGTCGTC
ACGTTCCGTAGGCTCTGGGCACAACTGTAGGCTACCCTCGCTTCTTCCTC
GTCTCCATCCAAATAAATGATCCATCCCCGCACGCGATGTGTGAGCAACG
TGCAGCCCAGTGTGTCGTTCGGGTTCTGACCTTCCTGTGGTTGTTATCCC
GGGTGCACGCGTTTTCCCTTTTTAGATGAGTCCCGACAACCGGTTCGTCA
GGAGCTTCTTGATGCTGGGTAAGGCCGCCTACGTCGCCGCGCACAGTGTC
CCCAAGGCGAGTGCATCGCTTTCGTGATTGTCGTGCAGACGTCGCTGGCA
TTTCATTTTCGCTGAGATTTACCAAGCTATTAGGTAGAAAATGTATTCAA
GCCCTGGAGAGCGCCATTGTCCATTGAAAGCCGTGGAGAGCCACTAAAAA
AGTCAAACAATACGTTGGTCACGTCGATGCGCTTTTAGGTTGAACAGTAC
GACACAGCATCCTTGAACCCTCTACATCATTTGTTGTCGATGAATGAACT
CGCGGGGGATAGAAGCAGTGTTGTTCTCAAACCCGCAGCGAGGTTTGCGC
AGGCACAAGTGATTTTCATATTCAGGTAACAATCGAGTGTGCCCTGGCTT
TCCAGCCGCACAATATCGAAATTACGACCAGCCATGTCTCGAGCTCACCA
GCAAAGTCGGTTACTATGCATGTGTATTGCAGCGCACCTCTGAGGACATT
TGAGGCTTATACCAAGTGGTCCAAGGAAGGCCATCAGCAATTGTTCCTCA
GCTTGAGACTTGAGCCCCGGGTTGAATTTTGCACTTTGGTTGGCGCGCCA
TGTCTCGTAGCGTAATGGGGTCAAGTGTTCATTATGGCGACAGCAGTTCC
CACATTTGTTCGTGGTACGCCGTG back to topCoding sequence (CDS) from alignment at Scaffold_103:259633..263006+ >EsuBft1022_5a-0001 ID=EsuBft1022_5a-0001|Name=EsuBft1022_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1089bp|location=Sequence derived from alignment at Scaffold_103:259633..263006+ (Ectocarpus subulatus male Bft15b)
ATGCCTCCACACGACGTACTGGCCTGCGTGACCATACTCGGCAGGGGCAA
TTGCTTTGCAAGCATCTACCAGATGTCGTGGATGAGCGCGAAGACCGTGC
TGATGTTCCACAAGTTCTGCAAGCACTTCGCACGGGAAATGTACGATGAA
CACATCTACCTCCCGCCGGAACAGAGCGGCGAGCTGGACCACGTCATGGA
GCGGTACGACCGGCTTGGGTTTTCGGGCACGATGGGCTCCATGGATGTCA
CGGTTAATCACGCTGGCCGTGCAATTGCCGTGACCGAGGGCTTCACCGGC
TCGACGAACGACAAGACCATCGTCTGCTGGGATGCCGCGGTCGAGAAGAT
TCGGACGGACAAGCAGTACACGGAGAAGGCCTTCGACGTGTACAACGAGG
ATGGCACGACGACAACGCTCAAGGGGTGCTACTTGCTAGTCGACAACGGG
TACCACAAGGTATTCTCCAGCCGCCATGCCGCGAAGGTCGCCGTAGCCGC
TGAGCTTGCTGCCACCTGCCGTTCCATGAAGAATGGAAAGGGTGCCGGCA
GTCGGCAAATTCACCTGGTTTGCAAGACTTGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNATCATGAAAGGAGGAGCGAGCGG
CAGCGCAGGAGCGGCGACGGCGGGTTTGTCCACCATCGTAGCGCCCGTTA
CCGCAGGGCAGAAGGGGGGTGATTTCAAGATCACCAAGGTAGAGGACTCG
CATGTGGTACAACCCCTGGTGGACCAGTTGGTTAGGACCAACCCTAAGAT
CGCCGGTCCCGCGATCAAGAGGACCCTGAAGACCGCGGGATTTACCGTCT
CTGACCGGCAATCACAACGCGCGAAGAAGCGCATCGCGACCGCTTCTAAG
GAGGATGAAGCGGGTGCCATTTCGCGTCTTCCATCCCTTTTCGAAGGGAT
CGAGCGCGATTATCCGGGTTCGGTCGCCACCGTCGAGATGAGTCCCGACA
ACCGGTTCGTCAGGAGCTTCTTGATGCTGGGTAAGGCCGCCTACGTCGCC
GCGCACAGTGTCCCCAAGGCGAGTGCATCGCTTTCGTGA back to top
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