EsuBft1022_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1022_5a-0001
Unique NameEsuBft1022_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_103contigScaffold_103:259633..263006 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FSK2
ProteomeIdEsuBft1022_5
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_H_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon6
Max annot lvl2759|Eukaryota
Length168
Evalue8.96e-53
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
DescriptionPlant transposon protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1022_5aEsuBft1022_5aEctocarpus subulatus male Bft15bgeneScaffold_103 259633..263006 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1022_5a-0001EsuBft1022_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_103 259633..262409 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1022_5a-0001-exonagat-exon-79153Ectocarpus subulatus male Bft15bexonScaffold_103 259633..259647 +
EsuBft1022_5a-0001-exonEsuBft1022_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_103 259734..259964 +
EsuBft1022_5a-0001-exonagat-exon-79152Ectocarpus subulatus male Bft15bexonScaffold_103 260052..260264 +
EsuBft1022_5a-0001-exonagat-exon-79154Ectocarpus subulatus male Bft15bexonScaffold_103 261328..261579 +
EsuBft1022_5a-0001-exonagat-exon-79150Ectocarpus subulatus male Bft15bexonScaffold_103 261733..262008 +
EsuBft1022_5a-0001-exonagat-exon-79151Ectocarpus subulatus male Bft15bexonScaffold_103 262308..263006 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1022_5a-0001-cdsEsuBft1022_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_103 259633..259647 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1022_5a-0001-exonagat-three_prime_utr-226Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_103 262410..263006 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1022_5a-0001 ID=EsuBft1022_5a-0001|Name=EsuBft1022_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1686bp|location=Sequence derived from alignment at Scaffold_103:259633..263006+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCCACACGACGTACTGGCCTGCGTGACCATACTCGGCAGGGGCAA
TTGCTTTGCAAGCATCTACCAGATGTCGTGGATGAGCGCGAAGACCGTGC
TGATGTTCCACAAGTTCTGCAAGCACTTCGCACGGGAAATGTACGATGAA
CACATCTACCTCCCGCCGGAACAGAGCGGCGAGCTGGACCACGTCATGGA
GCGGTACGACCGGCTTGGGTTTTCGGGCACGATGGGCTCCATGGATGTCA
CGGTTAATCACGCTGGCCGTGCAATTGCCGTGACCGAGGGCTTCACCGGC
TCGACGAACGACAAGACCATCGTCTGCTGGGATGCCGCGGTCGAGAAGAT
TCGGACGGACAAGCAGTACACGGAGAAGGCCTTCGACGTGTACAACGAGG
ATGGCACGACGACAACGCTCAAGGGGTGCTACTTGCTAGTCGACAACGGG
TACCACAAGGTATTCTCCAGCCGCCATGCCGCGAAGGTCGCCGTAGCCGC
TGAGCTTGCTGCCACCTGCCGTTCCATGAAGAATGGAAAGGGTGCCGGCA
GTCGGCAAATTCACCTGGTTTGCAAGACTTGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNATCATGAAAGGAGGAGCGAGCGG
CAGCGCAGGAGCGGCGACGGCGGGTTTGTCCACCATCGTAGCGCCCGTTA
CCGCAGGGCAGAAGGGGGGTGATTTCAAGATCACCAAGGTAGAGGACTCG
CATGTGGTACAACCCCTGGTGGACCAGTTGGTTAGGACCAACCCTAAGAT
CGCCGGTCCCGCGATCAAGAGGACCCTGAAGACCGCGGGATTTACCGTCT
CTGACCGGCAATCACAACGCGCGAAGAAGCGCATCGCGACCGCTTCTAAG
GAGGATGAAGCGGGTGCCATTTCGCGTCTTCCATCCCTTTTCGAAGGGAT
CGAGCGCGATTATCCGGGTTCGGTCGCCACCGTCGAGATGAGTCCCGACA
ACCGGTTCGTCAGGAGCTTCTTGATGCTGGGTAAGGCCGCCTACGTCGCC
GCGCACAGTGTCCCCAAGGCGAGTGCATCGCTTTCGTGATTGTCGTGCAG
ACGTCGCTGGCATTTCATTTTCGCTGAGATTTACCAAGCTATTAGGTAGA
AAATGTATTCAAGCCCTGGAGAGCGCCATTGTCCATTGAAAGCCGTGGAG
AGCCACTAAAAAAGTCAAACAATACGTTGGTCACGTCGATGCGCTTTTAG
GTTGAACAGTACGACACAGCATCCTTGAACCCTCTACATCATTTGTTGTC
GATGAATGAACTCGCGGGGGATAGAAGCAGTGTTGTTCTCAAACCCGCAG
CGAGGTTTGCGCAGGCACAAGTGATTTTCATATTCAGGTAACAATCGAGT
GTGCCCTGGCTTTCCAGCCGCACAATATCGAAATTACGACCAGCCATGTC
TCGAGCTCACCAGCAAAGTCGGTTACTATGCATGTGTATTGCAGCGCACC
TCTGAGGACATTTGAGGCTTATACCAAGTGGTCCAAGGAAGGCCATCAGC
AATTGTTCCTCAGCTTGAGACTTGAGCCCCGGGTTGAATTTTGCACTTTG
GTTGGCGCGCCATGTCTCGTAGCGTAATGGGGTCAAGTGTTCATTATGGC
GACAGCAGTTCCCACATTTGTTCGTGGTACGCCGTG
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protein sequence of EsuBft1022_5a-0001

>EsuBft1022_5 ID=EsuBft1022_5|Name=EsuBft1022_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=362bp
MPPHDVLACVTILGRGNCFASIYQMSWMSAKTVLMFHKFCKHFAREMYDE
HIYLPPEQSGELDHVMERYDRLGFSGTMGSMDVTVNHAGRAIAVTEGFTG
STNDKTIVCWDAAVEKIRTDKQYTEKAFDVYNEDGTTTTLKGCYLLVDNG
YHKVFSSRHAAKVAVAAELAATCRSMKNGKGAGSRQIHLVCKTXXXXXXX
XXXXXXXXXIMKGGASGSAGAATAGLSTIVAPVTAGQKGGDFKITKVEDS
HVVQPLVDQLVRTNPKIAGPAIKRTLKTAGFTVSDRQSQRAKKRIATASK
EDEAGAISRLPSLFEGIERDYPGSVATVEMSPDNRFVRSFLMLGKAAYVA
AHSVPKASASLS
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mRNA from alignment at Scaffold_103:259633..263006+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1022_5a-0001 ID=EsuBft1022_5a-0001|Name=EsuBft1022_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3374bp|location=Sequence derived from alignment at Scaffold_103:259633..263006+ (Ectocarpus subulatus male Bft15b)
ATGCCTCCACACGACGTACGGTACACGCAACCACATCACATCACTAATAA
TGACACCGCGATATCCCGTGTGTACATTCCTTGTTGCACTTGCTGGTGCA
GGTACTGGCCTGCGTGACCATACTCGGCAGGGGCAATTGCTTTGCAAGCA
TCTACCAGATGTCGTGGATGAGCGCGAAGACCGTGCTGATGTTCCACAAG
TTCTGCAAGCACTTCGCACGGGAAATGTACGATGAACACATCTACCTCCC
GCCGGAACAGAGCGGCGAGCTGGACCACGTCATGGAGCGGTACGACCGGC
TTGGGTTTTCGGGCACGATGGGCTCCATGGATGTAACTCATATCGGTTGG
AGTAAGTGCCCCTACAACCTAGCCCGTTCCTACATAGGCAAAGAGGGGGT
TCCTACGATCGGGTACTAGGTCACGGTTAATCACGCTGGCCGTGCAATTG
CCGTGACCGAGGGCTTCACCGGCTCGACGAACGACAAGACCATCGTCTGC
TGGGATGCCGCGGTCGAGAAGATTCGGACGGACAAGCAGTACACGGAGAA
GGCCTTCGACGTGTACAACGAGGATGGCACGACGACAACGCTCAAGGGGT
GCTACTTGCTAGTCGACAACGGGTACCACAAGGTGGATGGAAATGACATG
TTATGATTTTGGGTGACCGACGGTAGTGTTTTTGAAGAGGTGTGTGTCCG
GCCTGACAGAAAGAGAGAGAGGGAGAAAGAGAGAGAGAGAGAGAGAGCTG
CCCAGTGAGGTATTTGTTGTCTCGGGAAATCAGAACCTCGGTTGCCCGCT
CTTGAAGTTGACATGAGGTGTGTCATGGCTTTTGGTTTTTTGATAGGTCT
TTCCATTTCACGCCCCTTCGACCTTGAAGACCCTGCCCCCCCCCCCTATT
TCGCAGCATGTTAACAGCGTCGAATCGAAACGTCCGTCCCTCGGCCCTTC
TCCCTTCCCGTTGTCGTTTTATTTTGGGAAAACGACACAACAGGGTATAC
CCTGGTCGAAAAGCGACACACCTGGGTACACAGTCATTAAAGCAGAAAAT
GCGCTCATTTGATTGGTCACCGCCTAATTTCACCCCGGTGTGTCGCTTTT
CGACCAGGGTAAACCCTGCCGTGACCACTTTTCTCAAAAACTGTACCCTG
TTTTCGGAAATGTACCCTGACCTGTCGGGAAATCAGACCCTTTCATCAAT
CATTTCCCCCGCAGGAATCTTCCCAACTCCTTTTCCCCTCCAACCATGGG
ATACCAAACGGCGACTCTTCCTGCCCAATAACAACCATGGCAACGGGGCA
GGAATCAGTTTTCGCCCCTGCGAAACAACACTAACTATCAACTCTTCCGG
TCTAAATCAACAATGGCCGCCGGGCAATACCCCAGCACAACTCTGTTCCG
TTTTGAAACATGCACACACGGGTACGATACCCCGTGGACCACTGCTTGCT
GCAGTGTATATGCGAGATGCACGGGTCACGCTATGAAAGCGAGACCGATC
CTGCATGGTTGACATGCATATATATGGATATATTTGCCAATGTGTCGCGC
TGCGCTGAGCGGGTGGAGGGGAGAGGCAGCACCAGCACACACAGACACGC
CGTTGACATCAATCATGAAAGGAGGAGCGAGCGGCAGCGCAGGAGCGGCG
ACGGCGGGTTTGCCCACCACGGTAGCGCCCGTTACCGCAGGGCAGGTATT
CTCCAGCCGCCATGCCGCGAAGGTCGCCGTAGCCGCTGAGCTTGCTGCCA
CCTGCCGTTCCATGAAGAATGGAAAGGGTGCCGGCAGTCGGCAAATTCAC
CTGGTTTGCAAGACTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNATCATGAAAGGAGGAGCGAGCGGCAGCGCAGGAGCGG
CGACGGCGGGTTTGTCCACCATCGTAGCGCCCGTTACCGCAGGGCAGGTT
TTCTCCAGCCGCCTTGCCGCGAAGGTCGCCGTAGCCGCTGAGCTTGCTGC
CACCTGCCGTTCCATGAAGAATTGAAAGGGTGCCGGCAGTTGGCAAATTC
ACCTGGTTTGCAAGACGTGCACAAGTTGGGTTGTTTAAGGCTGCCTACAG
AAGGGGGGTGATTTCAAGATCACCAAGGTAGAGGACTCGCATGTGGTACA
ACCCCTGGTGGACCAGTTGGTTAGGACCAACCCTAAGATCGCCGGTCCCG
CGATCAAGAGGACCCTGAAGACCGCGGGATTTACCGTCTCTGACCGGCAA
TCACAACGCGCGAAGAAGCGCATCGCGACCGCTTCTAAGGAGGATGAAGC
GGGTGCCATTTCGCGTCTTCCATCCCTTTTCGAAGGGATCGAGCGCGATT
ATCCGGGTTCGGTCGCCACCGTCGAGGTAAGTGTTTGATCGGGACCCTAC
TGTTCAATATGCACGTGATGCAGCCGTGCAAGGTTGGGCAAGGACTCCAG
ACAACAGCAATACCACATGTACCCTAGCATGTTGTAGATGTGCCGTCGTC
ACGTTCCGTAGGCTCTGGGCACAACTGTAGGCTACCCTCGCTTCTTCCTC
GTCTCCATCCAAATAAATGATCCATCCCCGCACGCGATGTGTGAGCAACG
TGCAGCCCAGTGTGTCGTTCGGGTTCTGACCTTCCTGTGGTTGTTATCCC
GGGTGCACGCGTTTTCCCTTTTTAGATGAGTCCCGACAACCGGTTCGTCA
GGAGCTTCTTGATGCTGGGTAAGGCCGCCTACGTCGCCGCGCACAGTGTC
CCCAAGGCGAGTGCATCGCTTTCGTGATTGTCGTGCAGACGTCGCTGGCA
TTTCATTTTCGCTGAGATTTACCAAGCTATTAGGTAGAAAATGTATTCAA
GCCCTGGAGAGCGCCATTGTCCATTGAAAGCCGTGGAGAGCCACTAAAAA
AGTCAAACAATACGTTGGTCACGTCGATGCGCTTTTAGGTTGAACAGTAC
GACACAGCATCCTTGAACCCTCTACATCATTTGTTGTCGATGAATGAACT
CGCGGGGGATAGAAGCAGTGTTGTTCTCAAACCCGCAGCGAGGTTTGCGC
AGGCACAAGTGATTTTCATATTCAGGTAACAATCGAGTGTGCCCTGGCTT
TCCAGCCGCACAATATCGAAATTACGACCAGCCATGTCTCGAGCTCACCA
GCAAAGTCGGTTACTATGCATGTGTATTGCAGCGCACCTCTGAGGACATT
TGAGGCTTATACCAAGTGGTCCAAGGAAGGCCATCAGCAATTGTTCCTCA
GCTTGAGACTTGAGCCCCGGGTTGAATTTTGCACTTTGGTTGGCGCGCCA
TGTCTCGTAGCGTAATGGGGTCAAGTGTTCATTATGGCGACAGCAGTTCC
CACATTTGTTCGTGGTACGCCGTG
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Coding sequence (CDS) from alignment at Scaffold_103:259633..263006+

>EsuBft1022_5a-0001 ID=EsuBft1022_5a-0001|Name=EsuBft1022_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1089bp|location=Sequence derived from alignment at Scaffold_103:259633..263006+ (Ectocarpus subulatus male Bft15b)
ATGCCTCCACACGACGTACTGGCCTGCGTGACCATACTCGGCAGGGGCAA
TTGCTTTGCAAGCATCTACCAGATGTCGTGGATGAGCGCGAAGACCGTGC
TGATGTTCCACAAGTTCTGCAAGCACTTCGCACGGGAAATGTACGATGAA
CACATCTACCTCCCGCCGGAACAGAGCGGCGAGCTGGACCACGTCATGGA
GCGGTACGACCGGCTTGGGTTTTCGGGCACGATGGGCTCCATGGATGTCA
CGGTTAATCACGCTGGCCGTGCAATTGCCGTGACCGAGGGCTTCACCGGC
TCGACGAACGACAAGACCATCGTCTGCTGGGATGCCGCGGTCGAGAAGAT
TCGGACGGACAAGCAGTACACGGAGAAGGCCTTCGACGTGTACAACGAGG
ATGGCACGACGACAACGCTCAAGGGGTGCTACTTGCTAGTCGACAACGGG
TACCACAAGGTATTCTCCAGCCGCCATGCCGCGAAGGTCGCCGTAGCCGC
TGAGCTTGCTGCCACCTGCCGTTCCATGAAGAATGGAAAGGGTGCCGGCA
GTCGGCAAATTCACCTGGTTTGCAAGACTTGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNATCATGAAAGGAGGAGCGAGCGG
CAGCGCAGGAGCGGCGACGGCGGGTTTGTCCACCATCGTAGCGCCCGTTA
CCGCAGGGCAGAAGGGGGGTGATTTCAAGATCACCAAGGTAGAGGACTCG
CATGTGGTACAACCCCTGGTGGACCAGTTGGTTAGGACCAACCCTAAGAT
CGCCGGTCCCGCGATCAAGAGGACCCTGAAGACCGCGGGATTTACCGTCT
CTGACCGGCAATCACAACGCGCGAAGAAGCGCATCGCGACCGCTTCTAAG
GAGGATGAAGCGGGTGCCATTTCGCGTCTTCCATCCCTTTTCGAAGGGAT
CGAGCGCGATTATCCGGGTTCGGTCGCCACCGTCGAGATGAGTCCCGACA
ACCGGTTCGTCAGGAGCTTCTTGATGCTGGGTAAGGCCGCCTACGTCGCC
GCGCACAGTGTCCCCAAGGCGAGTGCATCGCTTTCGTGA
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