EsuBft1017_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1017_8a-0001
Unique NameEsuBft1017_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_189contigScaffold_189:544789..549177 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog4558.Sb04g007640.1
ProteomeIdEsuBft1017_8
Protein domainsIPR001128
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE
Protein domainsCoil
Protein domainsPTHR24286
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE_N_REGION
Ownerapollo_admin@sb-roscoff.fr
Noteallene oxide synthase 4 os:oryza sativa japonica gn:cyp74a4 pe:2 sv:1 [Automatic annotation]
Nb exon5
Max annot lvl35493|Streptophyta
Length1302
Hectar predicted targeting categoryother localisation
Evalue8.62e-11
EggNOG OGs2CMKA@1|root,2QQNS@2759|Eukaryota,37T8J@33090|Viridiplantae,3GANG@35493|Streptophyta,3KU93@4447|Liliopsida,3IG6H@38820|Poales
Date last modified2016-06-13
Date creation2016-06-13
KEGG rclassRC02105
KEGG koko:K01723
KEGG ReactionR07863,R07865
KEGG Pathwayko00592,ko01100,ko01110,map00592,map01100,map01110
KEGG ModuleM00113
GOsGO:0003674,GO:0003824,GO:0004497,GO:0006629,GO:0008150,GO:0008152,GO:0008202,GO:0016125,GO:0016491,GO:0044238,GO:0055114,GO:0071704,GO:1901360,GO:1901615
EC4.2.1.92
DescriptionBelongs to the cytochrome P450 family
COG categoryQ
BRITEko00000,ko00001,ko00002,ko00199,ko01000
Cross References
External references for this mRNA
DatabaseAccession
GO0020037
GO0005506
GO0016705
GO0055114
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1017_8aEsuBft1017_8aEctocarpus subulatus male Bft15bgeneScaffold_189 544789..549177 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1017_8a-0001EsuBft1017_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_189 545264..549013 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1017_8a-0001-exonagat-exon-30166Ectocarpus subulatus male Bft15bexonScaffold_189 544789..545381 -
EsuBft1017_8a-0001-exonagat-exon-30167Ectocarpus subulatus male Bft15bexonScaffold_189 546053..546171 -
EsuBft1017_8a-0001-exonagat-exon-30168Ectocarpus subulatus male Bft15bexonScaffold_189 546937..547062 -
EsuBft1017_8a-0001-exonagat-exon-30165Ectocarpus subulatus male Bft15bexonScaffold_189 547749..547904 -
EsuBft1017_8a-0001-exonEsuBft1017_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_189 548870..549177 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1017_8a-0001-exonagat-three_prime_utr-189Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_189 544789..545263 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1017_8a-0001-cdsEsuBft1017_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_189 545264..545381 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1017_8a-0001-exonagat-five_prime_utr-111Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_189 549014..549177 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1017_8a-0001 ID=EsuBft1017_8a-0001|Name=EsuBft1017_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1302bp|location=Sequence derived from alignment at Scaffold_189:544789..549177- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGGAATTGGGCGACGTGTGGACGCATGTGACCACCGCAAATGCCGAGAGC
TGTGCACTTGTAACCTCTCCAATCAGTTAGAAAAGATACCGCGCAAGTAA
CCACCCTGCCCCCGCGTTTACACCCACACGCCATGCTTGCGTTCGAACGG
AAACCCAGTTGCCCATGCAGGACATGGATAAATCGTTCATGTTCTTCACG
GGCTTCCAGTCGTCCTCGGCCCTGGCCAAGAACATGGAGTACTGCGTCGG
CTCGCTCGCGGCGAACCCGGATTTCCTGGCGGAGCTGAGGGCGGAACTCG
ACGGCCAGGAGCTGACGATCAAGTCGGTTTCCGATGCGAAGCGCTTCCCC
CTCCTGGACAGCTTCCACTGGGAAATCCTCCGCCTGTATCCCGCCCCCCA
GTTCTTCTTCAAGACCGCACAGATGGATCTTGTGGTGCCCACCAGCTCAG
GAGCAAGGTACCAGGTCCGGAAGGGGGACATGCTGTGCTGCCACCACCCT
TTGATTCACATCGACGAGGCTGTCTTTGGGGCGGACGCTACGGAGTTCAA
GCCCAAGCGCTTCATCGGTAACCCCGACCTGAAAGATGATGTGTTCGCCT
ATGCTTTCCCCAAGCCGTCGGAGGCGGGACGGGTGGAGGGCATGCCCTGG
GGCTGCGCGGCGCACACGGTCGGCGTGCTCGACGGCATCCTCAAGGTCTT
CTACGGCAGGTGGGTACAAGAAGCGGAGTGGGAGATGAAGGACCCGCCAA
TAATCGACCCCGTGGAATACCTTGGCGTGGTGGGGCCCGACGGATTGGGA
TTTGCCGAGGTTACACCCCGCAAATAACAAGTGGTGTTGAGGAAAATAGG
ACTATCATCGCATATTTTGGGAACTCGATCGATCCCCTATTTTGCCGAGG
TCGGGTTCTCGGCCCCGTCAATTTTTTTTTGGAAATATAAATAAGCGCCG
CAGATAGGCCGCCTGTTGGAGATAGTTTTATGAATGAGTGTGTGTTGGAG
TTGTCACAACCAGGAGTGTAGTTGTTGGACATTTTGTGTGTCGCCATGAT
TTCGTTGCTTGTGTTGGATGCTCTTTGTGTCTATCCTCACGAAGGACCTC
GGGGAAAACGTTTCGTATTGTGTCACGATTCTCGGGGGTGGACAAGTAAT
GCTGAAGCTGACGGTGATCATGGAATGTTGCAAGAGAGAGAAGGAGGTGC
CCCAAAACTTCGACAGAAATCGGGGACTCCGCGCTATCGTCCAAAGCCTC
TCACCACATACCCTCCAGGTACATCCCAATTGCGTCCTATGTACGGCTAC
CT
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protein sequence of EsuBft1017_8a-0001

>EsuBft1017_8 ID=EsuBft1017_8|Name=EsuBft1017_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=220bp
MQDMDKSFMFFTGFQSSSALAKNMEYCVGSLAANPDFLAELRAELDGQEL
TIKSVSDAKRFPLLDSFHWEILRLYPAPQFFFKTAQMDLVVPTSSGARYQ
VRKGDMLCCHHPLIHIDEAVFGADATEFKPKRFIGNPDLKDDVFAYAFPK
PSEAGRVEGMPWGCAAHTVGVLDGILKVFYGRWVQEAEWEMKDPPIIDPV
EYLGVVGPDGLGFAEVTPRK
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mRNA from alignment at Scaffold_189:544789..549177-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1017_8a-0001 ID=EsuBft1017_8a-0001|Name=EsuBft1017_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4389bp|location=Sequence derived from alignment at Scaffold_189:544789..549177- (Ectocarpus subulatus male Bft15b)
GGGAATTGGGCGACGTGTGGACGCATGTGACCACCGCAAATGCCGAGAGC
TGTGCACTTGTAACCTCTCCAATCAGTTAGAAAAGATACCGCGCAAGTAA
CCACCCTGCCCCCGCGTTTACACCCACACGCCATGCTTGCGTTCGAACGG
AAACCCAGTTGCCCATGCAGGACATGGATAAATCGTTCATGTTCTTCACG
GGCTTCCAGTCGTCCTCGGCCCTGGCCAAGAACATGGAGTACTGCGTCGG
CTCGCTCGCGGCGAACCCGGATTTCCTGGCGGAGCTGAGGGCGGAACTCG
ACGGCCAGGTACAGCAGTGGTAGCGACTTGGGCGTAAAAGAGAGATCATG
AAAGAGAAAAGTATAGGTTCAAGAGGGTAAACCGTGTTCTGTGCCGAACG
AGAGACTTGCCACACATATTTCCTATGATACGGTTTAGAAGAAAATCGTT
TTGTGGCTTGCCCCCTCCTCAAAGCTTCTGCTGTAGGTATTAGTTGCAAC
TAAAAATGGCTTTTATGCGTCTCCCAGGCAGCGCCCTTGTAACGCTGGCT
GAGGAGCGACCGCAATAGTTGGTGGGGTGTATCGTACTGGAGGCCGTGTG
CCTTATCCACCATGTAAGCTAGCCCCACATTCTGGTATTGTTTTTCACCG
GCTGAAGCAAGGTGAGATGTATTGAGGGTGGCGACCGTGGCTCCGTAACG
CGGACTAACCTGGCCGCAAACCCTGGCCCCAGAAAACCAGAAATTCCATC
CAAGGTTACGGAAGCACTCGAAGAAAGTGCTTCAACCCATTCCCAGAAGG
TATTCAAACAATTGCCGCTTCAAGATAGCGACCCAAATCGCTTGTCCGGG
TTATTATAGTACGAGCGCGCACCGAGGGTTGGCCGTGTGGGTTCGCACCA
TCGTTGCCTTGGCAACAAGGATCACAGTACCGCAGGCTGACTGCACGAGA
TGTCGCGCTCCCTGGACCGATTTTCAAAGCTTAAGGTCTCTGCAGGAAAC
GTCGGTGGCGATGCCGAAAATCGTGGCGTTGGAAACGTGTCTCTCCTTCG
AGTGGTTTTCCGAGGGTGTATCACTTAACGTTGGCATTTCCTTCGTTGTG
GAATAAACGGGTTTCAAAACTCTGTCCTCTGGGGGGTGATGTCTTCCGCA
GCCCACGGTGGTTGCCTTTTTGCGTGGTACATACGAAACCAATCCTTTTG
GTCTGCCAATCCGACGCGCGTATCTTGACCGCCGTCGCCCTCGTTCTTTT
TGTTTTTGTCATCGAGAGAGCAGGAGCTGACGATCAAGTCGGTTTCCGAT
GCGAAGCGCTTCCCCCTCCTGGACAGCTTCCACTGGGAAATCCTCCGCCT
GTATCCCGCCCCCCAGTTCTTCTTCAAGACCGCACAGATGGATCTTGTGG
TGCCCACCAGCTCAGGAGCAAGGTACCAGGTGAGTGATGCCCGTGCGCTC
CGCTTGCATGTGTCGTGGAGCTTCGTGGCACCCGCATGCCGACCGGGGAC
CATTGAAACAGCAGTCCCGTGATGCCTCAGCATCTCGGGGTAGCCTAGAA
TTAGCTTGGCATGTCGGCGTGGCCTAGAAAGTGGCTCGGTTTCCGCGATC
CGCCGTCCTTGCTAACGTATATGACACAAGATAGCACACCACCTGGATCA
ATTTTCAAAGCTCAATTACGCCACAACGAAGAGGATGTAAAAATGAAACA
ACGCATGCTCGGAGAGCTCTCAACGAGACAGCTTCAATGCCACCGGTGTC
GGCGCTGTGACTCTTTCTGCTGCTTAGAAGTCGGGGTTTGAAAATCGATC
CAGGGGGTGTGTTATCTTGTGTCATTTACGGTATTTACCCTTCGCGCGTC
TGCGACGGTGTTTCGTTGTCGCGTGTGGATTGGGGATCTTTGAAGCCATC
ATGATGGGATGCCGCAGCACGGCTCACAGAATCGCTTTGTTGTGGGCGAT
CCGTGCGTGAGAAAGCGGCGCAGACCCCGACGCAGGTTAGTCATATTGAC
TACAAATTATCACGAAACATTGTCGAGTCTGACATGCACAATAGCGAGGT
CGACAGGCACAAACGGACGGCGTTGGTTGTAACGGTTTTGCGCGAAACGG
TCGTGGTTTCCGCAGGTCCGGAAGGGGGACATGCTGTGCTGCCACCACCC
TTTGATTCACATCGACGAGGCTGTCTTTGGGGCGGACGCTACGGAGTTCA
AGCCCAAGCGCTTCATCGGTAACCCCGACCTGAAAGATGATGTGAGTGTT
TTTCCTGCTGCTGTTGTCGTTGATGGTGGTGACAATGATGGCAAGATGTC
TGTCAGTAGTCGTTGCACCTGTAGTTTCTTCAGCATCCTTTCTGGCTTGA
ACTTTTCATTCGACGGAAAAGTCGTTTTCATCCCGTAAATGCACCAGCAT
GAACAACATGATTTTCCAATACCTTGGTATCGTTTGCCTTTCGGTGAGCC
CTCTCCTAGAGGCGCCCCCTCTGCGCTTCCTGTGAGCAGTCAACAACGCG
TGGCAGGGTGGCCACAACCTAACGAGTTCGGCATCTCCCGCTGGTCATCA
TTCAGATTCGCTGTATTGTCCTATTTAAACTCTACTGTAAGTTGGGCACG
ACGATTTATAGATTTTCCTGTTCACGTTCCTTTCGCTGAGAATTCGATTT
TGCCAGCTCCGAACGGAAAGGCCCTAACCAGAGCCAGGCGGGGCCCCTTG
TGCAGCACAAGCCCCTTTCCCCAAACATGGCCCAACCACTCCCCTCGGTG
CCCAGCGGGCGCTCTTGTTCGCGAGGACGAGAACCAGACCCCGATCGATA
CTGTTGTGCATAAGCTAACCCCCAGGGTGATCGCCGCAGGTACCGCGTGA
CCGCACAACCTCCAAAACCACCGTGGCAGCACCTAACATCAACACCTGGC
TTGGAACAACTTGACTCCACACATTCCGGTGGCGATGTCTCTGTCGCCCC
GTCGTTGACGCCGTCCAATTTTGTTTTTTCCCTTCTCCCGGCTTGCCGTA
CAACAGGTGTTCGCCTATGCTTTCCCCAAGCCGTCGGAGGCGGGACGGGT
GGAGGGCATGCCCTGGGGCTGCGCGGCGCACACGGTCGGCGTGCTCGACG
GCATCCTCAAGGTCTTCTACGGCAGGTGAGGCAAGAAGCGTTCATCGGTG
CGCTGTACGTTAGAAGTGTATGTACATCGACGCGCAACGCGTTTTGGTGT
TGGATTGGACAAAGTTTTTTCCCGTCCCTTCGTGTCAACACCTTCCGCCC
GCAGAGCTTTTTGAGCAAATGCAAAGTACACCCATGGCAATACTTGCAAG
TACTAGATAGGGCGGGGCCGTCAATCGGTGCTCTATAGGTGTTGGTTGGG
TCGAGAAAGAGGGATGTTTATGCTTGCCGGTTTTCAGTTTTTGGGGCCCG
TGCATGGTGTACGAACAGGCCGATATTTGAGGCTATGTTTTCCTCCTCGG
ATGAAGGGAAAATCGGTCACACTTTGCGCTCCGCTGGTAATCATTAAACT
GTTTCTGTGAGGGTGGGGCAGGACACTACTTTCCGCTTTCACAAAGTACA
CCGAGCTGAAGCTGAAAGCAAATCTAACCGCAGCATTGTTTGGTCCATGA
GCAGTAGTCGAATCATGTCAAACCTTGTCCATTCTCCGCCGTTGCTTGCC
GGTTTGTCCAACTTACCCGATCAAACGAAACAAAACATCTCACCAAGCTC
GTGCAACACTCTTTTCACCCCCTGTTTCGCTTTAGTTTTCCCTGCGTTTC
TCCTCATCTGTCTTTGACGGTTTACCTGTTGCTATTTTTTTGAAAGGTGG
GTACAAGAAGCGGAGTGGGAGATGAAGGACCCGCCAATAATCGACCCCGT
GGAATACCTTGGCGTGGTGGGGCCCGACGGATTGGGATTTGCCGAGGTTA
CACCCCGCAAATAACAAGTGGTGTTGAGGAAAATAGGACTATCATCGCAT
ATTTTGGGAACTCGATCGATCCCCTATTTTGCCGAGGTCGGGTTCTCGGC
CCCGTCAATTTTTTTTTGGAAATATAAATAAGCGCCGCAGATAGGCCGCC
TGTTGGAGATAGTTTTATGAATGAGTGTGTGTTGGAGTTGTCACAACCAG
GAGTGTAGTTGTTGGACATTTTGTGTGTCGCCATGATTTCGTTGCTTGTG
TTGGATGCTCTTTGTGTCTATCCTCACGAAGGACCTCGGGGAAAACGTTT
CGTATTGTGTCACGATTCTCGGGGGTGGACAAGTAATGCTGAAGCTGACG
GTGATCATGGAATGTTGCAAGAGAGAGAAGGAGGTGCCCCAAAACTTCGA
CAGAAATCGGGGACTCCGCGCTATCGTCCAAAGCCTCTCACCACATACCC
TCCAGGTACATCCCAATTGCGTCCTATGTACGGCTACCT
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Coding sequence (CDS) from alignment at Scaffold_189:544789..549177-

>EsuBft1017_8a-0001 ID=EsuBft1017_8a-0001|Name=EsuBft1017_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=663bp|location=Sequence derived from alignment at Scaffold_189:544789..549177- (Ectocarpus subulatus male Bft15b)
ATGCAGGACATGGATAAATCGTTCATGTTCTTCACGGGCTTCCAGTCGTC
CTCGGCCCTGGCCAAGAACATGGAGTACTGCGTCGGCTCGCTCGCGGCGA
ACCCGGATTTCCTGGCGGAGCTGAGGGCGGAACTCGACGGCCAGGAGCTG
ACGATCAAGTCGGTTTCCGATGCGAAGCGCTTCCCCCTCCTGGACAGCTT
CCACTGGGAAATCCTCCGCCTGTATCCCGCCCCCCAGTTCTTCTTCAAGA
CCGCACAGATGGATCTTGTGGTGCCCACCAGCTCAGGAGCAAGGTACCAG
GTCCGGAAGGGGGACATGCTGTGCTGCCACCACCCTTTGATTCACATCGA
CGAGGCTGTCTTTGGGGCGGACGCTACGGAGTTCAAGCCCAAGCGCTTCA
TCGGTAACCCCGACCTGAAAGATGATGTGTTCGCCTATGCTTTCCCCAAG
CCGTCGGAGGCGGGACGGGTGGAGGGCATGCCCTGGGGCTGCGCGGCGCA
CACGGTCGGCGTGCTCGACGGCATCCTCAAGGTCTTCTACGGCAGGTGGG
TACAAGAAGCGGAGTGGGAGATGAAGGACCCGCCAATAATCGACCCCGTG
GAATACCTTGGCGTGGTGGGGCCCGACGGATTGGGATTTGCCGAGGTTAC
ACCCCGCAAATAA
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