|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 4558.Sb04g007640.1 |
| ProteomeId | EsuBft1017_8 |
| Protein domains | IPR001128 |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | Coil |
| Protein domains | PTHR24286 |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | allene oxide synthase 4 os:oryza sativa japonica gn:cyp74a4 pe:2 sv:1 [Automatic annotation] |
| Nb exon | 5 |
| Max annot lvl | 35493|Streptophyta |
| Length | 1302 |
| Hectar predicted targeting category | other localisation |
| Evalue | 8.62e-11 |
| EggNOG OGs | 2CMKA@1|root,2QQNS@2759|Eukaryota,37T8J@33090|Viridiplantae,3GANG@35493|Streptophyta,3KU93@4447|Liliopsida,3IG6H@38820|Poales |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| KEGG rclass | RC02105 |
| KEGG ko | ko:K01723 |
| KEGG Reaction | R07863,R07865 |
| KEGG Pathway | ko00592,ko01100,ko01110,map00592,map01100,map01110 |
| KEGG Module | M00113 |
| GOs | GO:0003674,GO:0003824,GO:0004497,GO:0006629,GO:0008150,GO:0008152,GO:0008202,GO:0016125,GO:0016491,GO:0044238,GO:0055114,GO:0071704,GO:1901360,GO:1901615 |
| EC | 4.2.1.92 |
| Description | Belongs to the cytochrome P450 family |
| COG category | Q |
| BRITE | ko00000,ko00001,ko00002,ko00199,ko01000 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0020037 |
| GO | 0005506 |
| GO | 0016705 |
| GO | 0055114 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1017_8a-0001 ID=EsuBft1017_8a-0001|Name=EsuBft1017_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1302bp|location=Sequence derived from alignment at Scaffold_189:544789..549177- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GGGAATTGGGCGACGTGTGGACGCATGTGACCACCGCAAATGCCGAGAGC
TGTGCACTTGTAACCTCTCCAATCAGTTAGAAAAGATACCGCGCAAGTAA
CCACCCTGCCCCCGCGTTTACACCCACACGCCATGCTTGCGTTCGAACGG
AAACCCAGTTGCCCATGCAGGACATGGATAAATCGTTCATGTTCTTCACG
GGCTTCCAGTCGTCCTCGGCCCTGGCCAAGAACATGGAGTACTGCGTCGG
CTCGCTCGCGGCGAACCCGGATTTCCTGGCGGAGCTGAGGGCGGAACTCG
ACGGCCAGGAGCTGACGATCAAGTCGGTTTCCGATGCGAAGCGCTTCCCC
CTCCTGGACAGCTTCCACTGGGAAATCCTCCGCCTGTATCCCGCCCCCCA
GTTCTTCTTCAAGACCGCACAGATGGATCTTGTGGTGCCCACCAGCTCAG
GAGCAAGGTACCAGGTCCGGAAGGGGGACATGCTGTGCTGCCACCACCCT
TTGATTCACATCGACGAGGCTGTCTTTGGGGCGGACGCTACGGAGTTCAA
GCCCAAGCGCTTCATCGGTAACCCCGACCTGAAAGATGATGTGTTCGCCT
ATGCTTTCCCCAAGCCGTCGGAGGCGGGACGGGTGGAGGGCATGCCCTGG
GGCTGCGCGGCGCACACGGTCGGCGTGCTCGACGGCATCCTCAAGGTCTT
CTACGGCAGGTGGGTACAAGAAGCGGAGTGGGAGATGAAGGACCCGCCAA
TAATCGACCCCGTGGAATACCTTGGCGTGGTGGGGCCCGACGGATTGGGA
TTTGCCGAGGTTACACCCCGCAAATAACAAGTGGTGTTGAGGAAAATAGG
ACTATCATCGCATATTTTGGGAACTCGATCGATCCCCTATTTTGCCGAGG
TCGGGTTCTCGGCCCCGTCAATTTTTTTTTGGAAATATAAATAAGCGCCG
CAGATAGGCCGCCTGTTGGAGATAGTTTTATGAATGAGTGTGTGTTGGAG
TTGTCACAACCAGGAGTGTAGTTGTTGGACATTTTGTGTGTCGCCATGAT
TTCGTTGCTTGTGTTGGATGCTCTTTGTGTCTATCCTCACGAAGGACCTC
GGGGAAAACGTTTCGTATTGTGTCACGATTCTCGGGGGTGGACAAGTAAT
GCTGAAGCTGACGGTGATCATGGAATGTTGCAAGAGAGAGAAGGAGGTGC
CCCAAAACTTCGACAGAAATCGGGGACTCCGCGCTATCGTCCAAAGCCTC
TCACCACATACCCTCCAGGTACATCCCAATTGCGTCCTATGTACGGCTAC
CT back to topprotein sequence of EsuBft1017_8a-0001 >EsuBft1017_8 ID=EsuBft1017_8|Name=EsuBft1017_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=220bp
MQDMDKSFMFFTGFQSSSALAKNMEYCVGSLAANPDFLAELRAELDGQEL
TIKSVSDAKRFPLLDSFHWEILRLYPAPQFFFKTAQMDLVVPTSSGARYQ
VRKGDMLCCHHPLIHIDEAVFGADATEFKPKRFIGNPDLKDDVFAYAFPK
PSEAGRVEGMPWGCAAHTVGVLDGILKVFYGRWVQEAEWEMKDPPIIDPV
EYLGVVGPDGLGFAEVTPRK back to topmRNA from alignment at Scaffold_189:544789..549177- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1017_8a-0001 ID=EsuBft1017_8a-0001|Name=EsuBft1017_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4389bp|location=Sequence derived from alignment at Scaffold_189:544789..549177- (Ectocarpus subulatus male Bft15b)
GGGAATTGGGCGACGTGTGGACGCATGTGACCACCGCAAATGCCGAGAGC
TGTGCACTTGTAACCTCTCCAATCAGTTAGAAAAGATACCGCGCAAGTAA
CCACCCTGCCCCCGCGTTTACACCCACACGCCATGCTTGCGTTCGAACGG
AAACCCAGTTGCCCATGCAGGACATGGATAAATCGTTCATGTTCTTCACG
GGCTTCCAGTCGTCCTCGGCCCTGGCCAAGAACATGGAGTACTGCGTCGG
CTCGCTCGCGGCGAACCCGGATTTCCTGGCGGAGCTGAGGGCGGAACTCG
ACGGCCAGGTACAGCAGTGGTAGCGACTTGGGCGTAAAAGAGAGATCATG
AAAGAGAAAAGTATAGGTTCAAGAGGGTAAACCGTGTTCTGTGCCGAACG
AGAGACTTGCCACACATATTTCCTATGATACGGTTTAGAAGAAAATCGTT
TTGTGGCTTGCCCCCTCCTCAAAGCTTCTGCTGTAGGTATTAGTTGCAAC
TAAAAATGGCTTTTATGCGTCTCCCAGGCAGCGCCCTTGTAACGCTGGCT
GAGGAGCGACCGCAATAGTTGGTGGGGTGTATCGTACTGGAGGCCGTGTG
CCTTATCCACCATGTAAGCTAGCCCCACATTCTGGTATTGTTTTTCACCG
GCTGAAGCAAGGTGAGATGTATTGAGGGTGGCGACCGTGGCTCCGTAACG
CGGACTAACCTGGCCGCAAACCCTGGCCCCAGAAAACCAGAAATTCCATC
CAAGGTTACGGAAGCACTCGAAGAAAGTGCTTCAACCCATTCCCAGAAGG
TATTCAAACAATTGCCGCTTCAAGATAGCGACCCAAATCGCTTGTCCGGG
TTATTATAGTACGAGCGCGCACCGAGGGTTGGCCGTGTGGGTTCGCACCA
TCGTTGCCTTGGCAACAAGGATCACAGTACCGCAGGCTGACTGCACGAGA
TGTCGCGCTCCCTGGACCGATTTTCAAAGCTTAAGGTCTCTGCAGGAAAC
GTCGGTGGCGATGCCGAAAATCGTGGCGTTGGAAACGTGTCTCTCCTTCG
AGTGGTTTTCCGAGGGTGTATCACTTAACGTTGGCATTTCCTTCGTTGTG
GAATAAACGGGTTTCAAAACTCTGTCCTCTGGGGGGTGATGTCTTCCGCA
GCCCACGGTGGTTGCCTTTTTGCGTGGTACATACGAAACCAATCCTTTTG
GTCTGCCAATCCGACGCGCGTATCTTGACCGCCGTCGCCCTCGTTCTTTT
TGTTTTTGTCATCGAGAGAGCAGGAGCTGACGATCAAGTCGGTTTCCGAT
GCGAAGCGCTTCCCCCTCCTGGACAGCTTCCACTGGGAAATCCTCCGCCT
GTATCCCGCCCCCCAGTTCTTCTTCAAGACCGCACAGATGGATCTTGTGG
TGCCCACCAGCTCAGGAGCAAGGTACCAGGTGAGTGATGCCCGTGCGCTC
CGCTTGCATGTGTCGTGGAGCTTCGTGGCACCCGCATGCCGACCGGGGAC
CATTGAAACAGCAGTCCCGTGATGCCTCAGCATCTCGGGGTAGCCTAGAA
TTAGCTTGGCATGTCGGCGTGGCCTAGAAAGTGGCTCGGTTTCCGCGATC
CGCCGTCCTTGCTAACGTATATGACACAAGATAGCACACCACCTGGATCA
ATTTTCAAAGCTCAATTACGCCACAACGAAGAGGATGTAAAAATGAAACA
ACGCATGCTCGGAGAGCTCTCAACGAGACAGCTTCAATGCCACCGGTGTC
GGCGCTGTGACTCTTTCTGCTGCTTAGAAGTCGGGGTTTGAAAATCGATC
CAGGGGGTGTGTTATCTTGTGTCATTTACGGTATTTACCCTTCGCGCGTC
TGCGACGGTGTTTCGTTGTCGCGTGTGGATTGGGGATCTTTGAAGCCATC
ATGATGGGATGCCGCAGCACGGCTCACAGAATCGCTTTGTTGTGGGCGAT
CCGTGCGTGAGAAAGCGGCGCAGACCCCGACGCAGGTTAGTCATATTGAC
TACAAATTATCACGAAACATTGTCGAGTCTGACATGCACAATAGCGAGGT
CGACAGGCACAAACGGACGGCGTTGGTTGTAACGGTTTTGCGCGAAACGG
TCGTGGTTTCCGCAGGTCCGGAAGGGGGACATGCTGTGCTGCCACCACCC
TTTGATTCACATCGACGAGGCTGTCTTTGGGGCGGACGCTACGGAGTTCA
AGCCCAAGCGCTTCATCGGTAACCCCGACCTGAAAGATGATGTGAGTGTT
TTTCCTGCTGCTGTTGTCGTTGATGGTGGTGACAATGATGGCAAGATGTC
TGTCAGTAGTCGTTGCACCTGTAGTTTCTTCAGCATCCTTTCTGGCTTGA
ACTTTTCATTCGACGGAAAAGTCGTTTTCATCCCGTAAATGCACCAGCAT
GAACAACATGATTTTCCAATACCTTGGTATCGTTTGCCTTTCGGTGAGCC
CTCTCCTAGAGGCGCCCCCTCTGCGCTTCCTGTGAGCAGTCAACAACGCG
TGGCAGGGTGGCCACAACCTAACGAGTTCGGCATCTCCCGCTGGTCATCA
TTCAGATTCGCTGTATTGTCCTATTTAAACTCTACTGTAAGTTGGGCACG
ACGATTTATAGATTTTCCTGTTCACGTTCCTTTCGCTGAGAATTCGATTT
TGCCAGCTCCGAACGGAAAGGCCCTAACCAGAGCCAGGCGGGGCCCCTTG
TGCAGCACAAGCCCCTTTCCCCAAACATGGCCCAACCACTCCCCTCGGTG
CCCAGCGGGCGCTCTTGTTCGCGAGGACGAGAACCAGACCCCGATCGATA
CTGTTGTGCATAAGCTAACCCCCAGGGTGATCGCCGCAGGTACCGCGTGA
CCGCACAACCTCCAAAACCACCGTGGCAGCACCTAACATCAACACCTGGC
TTGGAACAACTTGACTCCACACATTCCGGTGGCGATGTCTCTGTCGCCCC
GTCGTTGACGCCGTCCAATTTTGTTTTTTCCCTTCTCCCGGCTTGCCGTA
CAACAGGTGTTCGCCTATGCTTTCCCCAAGCCGTCGGAGGCGGGACGGGT
GGAGGGCATGCCCTGGGGCTGCGCGGCGCACACGGTCGGCGTGCTCGACG
GCATCCTCAAGGTCTTCTACGGCAGGTGAGGCAAGAAGCGTTCATCGGTG
CGCTGTACGTTAGAAGTGTATGTACATCGACGCGCAACGCGTTTTGGTGT
TGGATTGGACAAAGTTTTTTCCCGTCCCTTCGTGTCAACACCTTCCGCCC
GCAGAGCTTTTTGAGCAAATGCAAAGTACACCCATGGCAATACTTGCAAG
TACTAGATAGGGCGGGGCCGTCAATCGGTGCTCTATAGGTGTTGGTTGGG
TCGAGAAAGAGGGATGTTTATGCTTGCCGGTTTTCAGTTTTTGGGGCCCG
TGCATGGTGTACGAACAGGCCGATATTTGAGGCTATGTTTTCCTCCTCGG
ATGAAGGGAAAATCGGTCACACTTTGCGCTCCGCTGGTAATCATTAAACT
GTTTCTGTGAGGGTGGGGCAGGACACTACTTTCCGCTTTCACAAAGTACA
CCGAGCTGAAGCTGAAAGCAAATCTAACCGCAGCATTGTTTGGTCCATGA
GCAGTAGTCGAATCATGTCAAACCTTGTCCATTCTCCGCCGTTGCTTGCC
GGTTTGTCCAACTTACCCGATCAAACGAAACAAAACATCTCACCAAGCTC
GTGCAACACTCTTTTCACCCCCTGTTTCGCTTTAGTTTTCCCTGCGTTTC
TCCTCATCTGTCTTTGACGGTTTACCTGTTGCTATTTTTTTGAAAGGTGG
GTACAAGAAGCGGAGTGGGAGATGAAGGACCCGCCAATAATCGACCCCGT
GGAATACCTTGGCGTGGTGGGGCCCGACGGATTGGGATTTGCCGAGGTTA
CACCCCGCAAATAACAAGTGGTGTTGAGGAAAATAGGACTATCATCGCAT
ATTTTGGGAACTCGATCGATCCCCTATTTTGCCGAGGTCGGGTTCTCGGC
CCCGTCAATTTTTTTTTGGAAATATAAATAAGCGCCGCAGATAGGCCGCC
TGTTGGAGATAGTTTTATGAATGAGTGTGTGTTGGAGTTGTCACAACCAG
GAGTGTAGTTGTTGGACATTTTGTGTGTCGCCATGATTTCGTTGCTTGTG
TTGGATGCTCTTTGTGTCTATCCTCACGAAGGACCTCGGGGAAAACGTTT
CGTATTGTGTCACGATTCTCGGGGGTGGACAAGTAATGCTGAAGCTGACG
GTGATCATGGAATGTTGCAAGAGAGAGAAGGAGGTGCCCCAAAACTTCGA
CAGAAATCGGGGACTCCGCGCTATCGTCCAAAGCCTCTCACCACATACCC
TCCAGGTACATCCCAATTGCGTCCTATGTACGGCTACCT back to topCoding sequence (CDS) from alignment at Scaffold_189:544789..549177- >EsuBft1017_8a-0001 ID=EsuBft1017_8a-0001|Name=EsuBft1017_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=663bp|location=Sequence derived from alignment at Scaffold_189:544789..549177- (Ectocarpus subulatus male Bft15b)
ATGCAGGACATGGATAAATCGTTCATGTTCTTCACGGGCTTCCAGTCGTC
CTCGGCCCTGGCCAAGAACATGGAGTACTGCGTCGGCTCGCTCGCGGCGA
ACCCGGATTTCCTGGCGGAGCTGAGGGCGGAACTCGACGGCCAGGAGCTG
ACGATCAAGTCGGTTTCCGATGCGAAGCGCTTCCCCCTCCTGGACAGCTT
CCACTGGGAAATCCTCCGCCTGTATCCCGCCCCCCAGTTCTTCTTCAAGA
CCGCACAGATGGATCTTGTGGTGCCCACCAGCTCAGGAGCAAGGTACCAG
GTCCGGAAGGGGGACATGCTGTGCTGCCACCACCCTTTGATTCACATCGA
CGAGGCTGTCTTTGGGGCGGACGCTACGGAGTTCAAGCCCAAGCGCTTCA
TCGGTAACCCCGACCTGAAAGATGATGTGTTCGCCTATGCTTTCCCCAAG
CCGTCGGAGGCGGGACGGGTGGAGGGCATGCCCTGGGGCTGCGCGGCGCA
CACGGTCGGCGTGCTCGACGGCATCCTCAAGGTCTTCTACGGCAGGTGGG
TACAAGAAGCGGAGTGGGAGATGAAGGACCCGCCAATAATCGACCCCGTG
GAATACCTTGGCGTGGTGGGGCCCGACGGATTGGGATTTGCCGAGGTTAC
ACCCCGCAAATAA back to top
|