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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Seed ortholog | 13735.ENSPSIP00000001057 |
ProteomeId | EsuBft1017_17 |
Protein domains | SSF56672 |
Protein domains | PTHR19446 |
Protein domains | IPR005135 |
Protein domains | IPR000477 |
Owner | apollo_admin@sb-roscoff.fr |
Note | rna-directed dna polymerase from mobile element jockey os:drosophila funebris gn:jockey\pol pe: [Automatic annotation] |
Nb exon | 1 |
Max annot lvl | 33208|Metazoa |
Length | 2942 |
Hectar predicted targeting category | other localisation |
Evalue | 3.21e-76 |
EggNOG OGs | KOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BHR3@33208|Metazoa,3CUIP@33213|Bilateria,48DAM@7711|Chordata,49HS5@7742|Vertebrata,4CMNI@8459|Testudines |
Date last modified | 2016-06-13 |
Date creation | 2016-06-13 |
Description | Reverse transcriptase (RNA-dependent DNA polymerase) |
COG category | S |
Cross References
External references for this mRNA
Database | Accession |
GO | 0006259 |
EC | 3.1 |
GO | 0004518 |
GO | 0016740 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1017_17a-0001 ID=EsuBft1017_17a-0001|Name=EsuBft1017_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2942bp|location=Sequence derived from alignment at Scaffold_189:604222..607163- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GTNGAGGGCCACACCGCTCCGGGACAAGAAGACAACTCTATGGGAAACAA GGCAAGAACCGGGGTAACTATCACGTTAGCCCGAGTATCGCAAGAAAATA GTAAAAATACGAAAAAGAGAGGAAAATGGAGGAAACGGAGGGGTCGGGCG GCGCGTAGGCTAGCTAAGAGAGCAGCGCGCACCGCGCGAAAGAGACAGCA GGGTCAACTTCTTAGGGTAGCAACCTGGAATGTGCGGACTTTGGCTGTAA TCGGGGTCAATGGATACGGGCGAGCTTACAGCGTTCTACACGAGGCAGCG AGACAAGACGTATCGGTGGTAGGAATGCAGGAGACACGGAGGGCAGGTCG AACGGAATTTGCAGCAGCGGGTTTCCGGGTGTTCTGCTGTGGCACGGAGA CTGGTGGAGTCCATGGTGTGGGGATAGCCGTCAAAGAGTCACTGTGCAAG ACATCCACGTTCACTACGGAGTTTATCGACGAACGCCTTATGGCCATGAG GCTTCTGTTGGCAGGCCACCGTGGAGCGGTCAACTTCGTAGCCGCGTCTG CTCCAACCGAACCTTCAACCGCCTCCAGCAAGCGCGTGTTCTGGGGAAAA CTTGACAGTCTCGTGCGGAGGATCCCTTCCAAAGAATGTGTGTATGTCCT ACTGGACGCCAACGCGCGGACGGGAGATAGGTTGGACGGAGGGGACGGAA GGGTAATAGGAATGTACGGGCGTGATGAGCTCAACGACAATGGCATGCTA CTGTTGAACTTCGCAACGGAAAACAGGCTAGCTCTCACGAACACGTTCTT TGAGACACGCAAGGGCGGAATATGGCACACATACAACGGTGTGTCGGGAA ACGATTGCAAGCGCCTTGACTACATCCTGACAAGGCAGGCACATCACGGC CGAGTATCTAACGTGGTCGTCATCCCCCAGCCGGTTCGCCCGGTCAAAGC AGACTCAGACCACAATATGGTAGTAGCCACCGTCAACCTCGGTGGCAGGC TTGCCCACAACCGTGCAGTTCGGACTAAACCGAAACAGAAGCAATTCAAC CGACAGGAATTGCAGTTCGAAGCAGCACGGTGTGCGGTGACTAATCGACT CCTCCTCAACCTCGACACACGACTTGACGAGCGAACAACCACCGCGGCGG AATTGGCGACCGACTTTACCAATGCTCTCCTCGACGCAGCGCGGACGACC CTGGGGGAGGAACCGCGGAGACGCCGCACGCAGGAGTGGTGTGAGACCCC AGAGACGCGAGCAGCGCTGGAGCAGGCCCTTACCAAACGTCGGGAAGCGC GCCGGGCGATGAGGGGCAACTGGAACTCAGCGACGTGGAGGGTTCTCAAA GCAGCGTGTCAGGGAGTGGCTACAGCAGTCGAAACGGTCATTCATGCCCA CCTGGACGCATATGTGACTGAGCTCGAAGAAATCTACAAAGATCGCGACA TGCGAGGACTGTACCAACGCCTCAAGAGATCAGTGGGCCTCAGCGGGAGA CAAGCGGGGGGACAGCAGTTCATCACGAACAAGGACGGCGTGTTGCTCCG GAACAGGGACGACATCCTCCAGCGGTGGGCGAGATTCTTCAGCACCCTAC TCAACACCAAATCCCCCACCCTGAACCCAGACATCATCGAACGAGTGACA CAGCGGCAAGCGACACGTGACACTCAACGGTTGGGAGATGTGCCAAAACT CGAGGAGGTGGCACGGGCAACGAAAGGCCTCAAGAACTGGAAGGCACCCG GCCATGACTCCCTCCCTGCCGAGTTGCTCAAGATCGATGACGACGAACCC TTCGTCCTGGGACACCTCCATACCATCCTCGTCAAGGTGTGGAACGGAGG AGATTTTCCGCTAGAGTGGAAGGATGCAACCATCACGGTGCTGTACAACA AGGGTGACCGGTCCAACTGTAACAACTACAGGAGGATTTCGCTACTATCT CACGTAGGCAAGGTCCCCATCAAGATCATCACCAACCGTCTAAGCGCCTT CGGCGAAGCCAACAACATCCTCCCGGAGGAACAGTGCGGATTTCGACCCG GGCGATCCACCGTCGACATGCTGTTCGTCGTGCGCCGCCTCCAGGAGCTG GGGCGGAGAAAGAAAATACCGCTCTACATGTGCTTCGTCGACTTGAACAA GGCGTATGATTCGGTGGACCGAGAGATGCTATGGAAGGTGCTGGCCAGGG CCGGGATTCCCGCGAAGCTGATCGAAGTCATCCGCCAATTCCACGATGGA ATGCGGGCCCGGGTGCGCATGGACGACGGAGAACTGTCGGACTGGCTCTT CGTGACACAGCGCGTGCGACAAGGATGTGTGCTATCCCCACTGCTGTTCA ACATCTTCTTCACCGAGGTCCTCGAGGTCGTTATCATCCGATTCAGCGAG GATGATGTTGTCCTGCGCAGCCTGGTGTGCTTGGAGGAGGGGAAGGCGGA AGCGGGGGGGTGGAGGAGACACCCCTTGACCGAGTACGGAGGGCAGTATG GGGGATGCTGTATGCCGATGATGCCGGCGTCGTATCGAGGTCTGCAGAAG GACTGGCGAGAATGATGACCATCATCGTTGAGGTGTTCGGGGAGTTCGGG CTAACGGTGTCGGAGAAGAAGACGGAGACGCTCCTGATGCGCGCAAAGGA CAAGCCGACTACAACATCACAGCCCGCCCCGCCTCCACCACTGACCATCG AAGCCGCGGGACAGAAATACGCCCAGACGACCGAGTTCCGGTACCTCGGT GGCCTCGTCAACGAACATGGCGACCTCACCCGGGAGATCAACTACAGGAG CAGAGGAGCGTGGGCGTGCCTCAGGCGATATGGCCGGGAGCTCTTCGACA GACCGCAAGCGCCATTCCGACTCAAGATCCACCTGCTCCAGGCGGAGGCG ATGGAGGCACTGCTGTACGGCTGCATGACATGGTCACCACTC back to topprotein sequence of EsuBft1017_17a-0001 >EsuBft1017_17 ID=EsuBft1017_17|Name=EsuBft1017_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=841bp
MGNKARTGVTITLARVSQENSKNTKKRGKWRKRRGRAARRLAKRAARTAR KRQQGQLLRVATWNVRTLAVIGVNGYGRAYSVLHEAARQDVSVVGMQETR RAGRTEFAAAGFRVFCCGTETGGVHGVGIAVKESLCKTSTFTTEFIDERL MAMRLLLAGHRGAVNFVAASAPTEPSTASSKRVFWGKLDSLVRRIPSKEC VYVLLDANARTGDRLDGGDGRVIGMYGRDELNDNGMLLLNFATENRLALT NTFFETRKGGIWHTYNGVSGNDCKRLDYILTRQAHHGRVSNVVVIPQPVR PVKADSDHNMVVATVNLGGRLAHNRAVRTKPKQKQFNRQELQFEAARCAV TNRLLLNLDTRLDERTTTAAELATDFTNALLDAARTTLGEEPRRRRTQEW CETPETRAALEQALTKRREARRAMRGNWNSATWRVLKAACQGVATAVETV IHAHLDAYVTELEEIYKDRDMRGLYQRLKRSVGLSGRQAGGQQFITNKDG VLLRNRDDILQRWARFFSTLLNTKSPTLNPDIIERVTQRQATRDTQRLGD VPKLEEVARATKGLKNWKAPGHDSLPAELLKIDDDEPFVLGHLHTILVKV WNGGDFPLEWKDATITVLYNKGDRSNCNNYRRISLLSHVGKVPIKIITNR LSAFGEANNILPEEQCGFRPGRSTVDMLFVVRRLQELGRRKKIPLYMCFV DLNKAYDSVDREMLWKVLARAGIPAKLIEVIRQFHDGMRARVRMDDGELS DWLFVTQRVRQGCVLSPLLFNIFFTEVLEVVIIRFSEDDVVLRSLVCLEE GKAEAGGWRRHPLTEYGGQYGGCCMPMMPASYRGLQKDWRE back to topmRNA from alignment at Scaffold_189:604222..607163- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1017_17a-0001 ID=EsuBft1017_17a-0001|Name=EsuBft1017_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2942bp|location=Sequence derived from alignment at Scaffold_189:604222..607163- (Ectocarpus subulatus male Bft15b) GTNGAGGGCCACACCGCTCCGGGACAAGAAGACAACTCTATGGGAAACAA
GGCAAGAACCGGGGTAACTATCACGTTAGCCCGAGTATCGCAAGAAAATA
GTAAAAATACGAAAAAGAGAGGAAAATGGAGGAAACGGAGGGGTCGGGCG
GCGCGTAGGCTAGCTAAGAGAGCAGCGCGCACCGCGCGAAAGAGACAGCA
GGGTCAACTTCTTAGGGTAGCAACCTGGAATGTGCGGACTTTGGCTGTAA
TCGGGGTCAATGGATACGGGCGAGCTTACAGCGTTCTACACGAGGCAGCG
AGACAAGACGTATCGGTGGTAGGAATGCAGGAGACACGGAGGGCAGGTCG
AACGGAATTTGCAGCAGCGGGTTTCCGGGTGTTCTGCTGTGGCACGGAGA
CTGGTGGAGTCCATGGTGTGGGGATAGCCGTCAAAGAGTCACTGTGCAAG
ACATCCACGTTCACTACGGAGTTTATCGACGAACGCCTTATGGCCATGAG
GCTTCTGTTGGCAGGCCACCGTGGAGCGGTCAACTTCGTAGCCGCGTCTG
CTCCAACCGAACCTTCAACCGCCTCCAGCAAGCGCGTGTTCTGGGGAAAA
CTTGACAGTCTCGTGCGGAGGATCCCTTCCAAAGAATGTGTGTATGTCCT
ACTGGACGCCAACGCGCGGACGGGAGATAGGTTGGACGGAGGGGACGGAA
GGGTAATAGGAATGTACGGGCGTGATGAGCTCAACGACAATGGCATGCTA
CTGTTGAACTTCGCAACGGAAAACAGGCTAGCTCTCACGAACACGTTCTT
TGAGACACGCAAGGGCGGAATATGGCACACATACAACGGTGTGTCGGGAA
ACGATTGCAAGCGCCTTGACTACATCCTGACAAGGCAGGCACATCACGGC
CGAGTATCTAACGTGGTCGTCATCCCCCAGCCGGTTCGCCCGGTCAAAGC
AGACTCAGACCACAATATGGTAGTAGCCACCGTCAACCTCGGTGGCAGGC
TTGCCCACAACCGTGCAGTTCGGACTAAACCGAAACAGAAGCAATTCAAC
CGACAGGAATTGCAGTTCGAAGCAGCACGGTGTGCGGTGACTAATCGACT
CCTCCTCAACCTCGACACACGACTTGACGAGCGAACAACCACCGCGGCGG
AATTGGCGACCGACTTTACCAATGCTCTCCTCGACGCAGCGCGGACGACC
CTGGGGGAGGAACCGCGGAGACGCCGCACGCAGGAGTGGTGTGAGACCCC
AGAGACGCGAGCAGCGCTGGAGCAGGCCCTTACCAAACGTCGGGAAGCGC
GCCGGGCGATGAGGGGCAACTGGAACTCAGCGACGTGGAGGGTTCTCAAA
GCAGCGTGTCAGGGAGTGGCTACAGCAGTCGAAACGGTCATTCATGCCCA
CCTGGACGCATATGTGACTGAGCTCGAAGAAATCTACAAAGATCGCGACA
TGCGAGGACTGTACCAACGCCTCAAGAGATCAGTGGGCCTCAGCGGGAGA
CAAGCGGGGGGACAGCAGTTCATCACGAACAAGGACGGCGTGTTGCTCCG
GAACAGGGACGACATCCTCCAGCGGTGGGCGAGATTCTTCAGCACCCTAC
TCAACACCAAATCCCCCACCCTGAACCCAGACATCATCGAACGAGTGACA
CAGCGGCAAGCGACACGTGACACTCAACGGTTGGGAGATGTGCCAAAACT
CGAGGAGGTGGCACGGGCAACGAAAGGCCTCAAGAACTGGAAGGCACCCG
GCCATGACTCCCTCCCTGCCGAGTTGCTCAAGATCGATGACGACGAACCC
TTCGTCCTGGGACACCTCCATACCATCCTCGTCAAGGTGTGGAACGGAGG
AGATTTTCCGCTAGAGTGGAAGGATGCAACCATCACGGTGCTGTACAACA
AGGGTGACCGGTCCAACTGTAACAACTACAGGAGGATTTCGCTACTATCT
CACGTAGGCAAGGTCCCCATCAAGATCATCACCAACCGTCTAAGCGCCTT
CGGCGAAGCCAACAACATCCTCCCGGAGGAACAGTGCGGATTTCGACCCG
GGCGATCCACCGTCGACATGCTGTTCGTCGTGCGCCGCCTCCAGGAGCTG
GGGCGGAGAAAGAAAATACCGCTCTACATGTGCTTCGTCGACTTGAACAA
GGCGTATGATTCGGTGGACCGAGAGATGCTATGGAAGGTGCTGGCCAGGG
CCGGGATTCCCGCGAAGCTGATCGAAGTCATCCGCCAATTCCACGATGGA
ATGCGGGCCCGGGTGCGCATGGACGACGGAGAACTGTCGGACTGGCTCTT
CGTGACACAGCGCGTGCGACAAGGATGTGTGCTATCCCCACTGCTGTTCA
ACATCTTCTTCACCGAGGTCCTCGAGGTCGTTATCATCCGATTCAGCGAG
GATGATGTTGTCCTGCGCAGCCTGGTGTGCTTGGAGGAGGGGAAGGCGGA
AGCGGGGGGGTGGAGGAGACACCCCTTGACCGAGTACGGAGGGCAGTATG
GGGGATGCTGTATGCCGATGATGCCGGCGTCGTATCGAGGTCTGCAGAAG
GACTGGCGAGAATGATGACCATCATCGTTGAGGTGTTCGGGGAGTTCGGG
CTAACGGTGTCGGAGAAGAAGACGGAGACGCTCCTGATGCGCGCAAAGGA
CAAGCCGACTACAACATCACAGCCCGCCCCGCCTCCACCACTGACCATCG
AAGCCGCGGGACAGAAATACGCCCAGACGACCGAGTTCCGGTACCTCGGT
GGCCTCGTCAACGAACATGGCGACCTCACCCGGGAGATCAACTACAGGAG
CAGAGGAGCGTGGGCGTGCCTCAGGCGATATGGCCGGGAGCTCTTCGACA
GACCGCAAGCGCCATTCCGACTCAAGATCCACCTGCTCCAGGCGGAGGCG
ATGGAGGCACTGCTGTACGGCTGCATGACATGGTCACCACTC back to topCoding sequence (CDS) from alignment at Scaffold_189:604222..607163- >EsuBft1017_17a-0001 ID=EsuBft1017_17a-0001|Name=EsuBft1017_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2526bp|location=Sequence derived from alignment at Scaffold_189:604222..607163- (Ectocarpus subulatus male Bft15b) ATGGGAAACAAGGCAAGAACCGGGGTAACTATCACGTTAGCCCGAGTATC GCAAGAAAATAGTAAAAATACGAAAAAGAGAGGAAAATGGAGGAAACGGA GGGGTCGGGCGGCGCGTAGGCTAGCTAAGAGAGCAGCGCGCACCGCGCGA AAGAGACAGCAGGGTCAACTTCTTAGGGTAGCAACCTGGAATGTGCGGAC TTTGGCTGTAATCGGGGTCAATGGATACGGGCGAGCTTACAGCGTTCTAC ACGAGGCAGCGAGACAAGACGTATCGGTGGTAGGAATGCAGGAGACACGG AGGGCAGGTCGAACGGAATTTGCAGCAGCGGGTTTCCGGGTGTTCTGCTG TGGCACGGAGACTGGTGGAGTCCATGGTGTGGGGATAGCCGTCAAAGAGT CACTGTGCAAGACATCCACGTTCACTACGGAGTTTATCGACGAACGCCTT ATGGCCATGAGGCTTCTGTTGGCAGGCCACCGTGGAGCGGTCAACTTCGT AGCCGCGTCTGCTCCAACCGAACCTTCAACCGCCTCCAGCAAGCGCGTGT TCTGGGGAAAACTTGACAGTCTCGTGCGGAGGATCCCTTCCAAAGAATGT GTGTATGTCCTACTGGACGCCAACGCGCGGACGGGAGATAGGTTGGACGG AGGGGACGGAAGGGTAATAGGAATGTACGGGCGTGATGAGCTCAACGACA ATGGCATGCTACTGTTGAACTTCGCAACGGAAAACAGGCTAGCTCTCACG AACACGTTCTTTGAGACACGCAAGGGCGGAATATGGCACACATACAACGG TGTGTCGGGAAACGATTGCAAGCGCCTTGACTACATCCTGACAAGGCAGG CACATCACGGCCGAGTATCTAACGTGGTCGTCATCCCCCAGCCGGTTCGC CCGGTCAAAGCAGACTCAGACCACAATATGGTAGTAGCCACCGTCAACCT CGGTGGCAGGCTTGCCCACAACCGTGCAGTTCGGACTAAACCGAAACAGA AGCAATTCAACCGACAGGAATTGCAGTTCGAAGCAGCACGGTGTGCGGTG ACTAATCGACTCCTCCTCAACCTCGACACACGACTTGACGAGCGAACAAC CACCGCGGCGGAATTGGCGACCGACTTTACCAATGCTCTCCTCGACGCAG CGCGGACGACCCTGGGGGAGGAACCGCGGAGACGCCGCACGCAGGAGTGG TGTGAGACCCCAGAGACGCGAGCAGCGCTGGAGCAGGCCCTTACCAAACG TCGGGAAGCGCGCCGGGCGATGAGGGGCAACTGGAACTCAGCGACGTGGA GGGTTCTCAAAGCAGCGTGTCAGGGAGTGGCTACAGCAGTCGAAACGGTC ATTCATGCCCACCTGGACGCATATGTGACTGAGCTCGAAGAAATCTACAA AGATCGCGACATGCGAGGACTGTACCAACGCCTCAAGAGATCAGTGGGCC TCAGCGGGAGACAAGCGGGGGGACAGCAGTTCATCACGAACAAGGACGGC GTGTTGCTCCGGAACAGGGACGACATCCTCCAGCGGTGGGCGAGATTCTT CAGCACCCTACTCAACACCAAATCCCCCACCCTGAACCCAGACATCATCG AACGAGTGACACAGCGGCAAGCGACACGTGACACTCAACGGTTGGGAGAT GTGCCAAAACTCGAGGAGGTGGCACGGGCAACGAAAGGCCTCAAGAACTG GAAGGCACCCGGCCATGACTCCCTCCCTGCCGAGTTGCTCAAGATCGATG ACGACGAACCCTTCGTCCTGGGACACCTCCATACCATCCTCGTCAAGGTG TGGAACGGAGGAGATTTTCCGCTAGAGTGGAAGGATGCAACCATCACGGT GCTGTACAACAAGGGTGACCGGTCCAACTGTAACAACTACAGGAGGATTT CGCTACTATCTCACGTAGGCAAGGTCCCCATCAAGATCATCACCAACCGT CTAAGCGCCTTCGGCGAAGCCAACAACATCCTCCCGGAGGAACAGTGCGG ATTTCGACCCGGGCGATCCACCGTCGACATGCTGTTCGTCGTGCGCCGCC TCCAGGAGCTGGGGCGGAGAAAGAAAATACCGCTCTACATGTGCTTCGTC GACTTGAACAAGGCGTATGATTCGGTGGACCGAGAGATGCTATGGAAGGT GCTGGCCAGGGCCGGGATTCCCGCGAAGCTGATCGAAGTCATCCGCCAAT TCCACGATGGAATGCGGGCCCGGGTGCGCATGGACGACGGAGAACTGTCG GACTGGCTCTTCGTGACACAGCGCGTGCGACAAGGATGTGTGCTATCCCC ACTGCTGTTCAACATCTTCTTCACCGAGGTCCTCGAGGTCGTTATCATCC GATTCAGCGAGGATGATGTTGTCCTGCGCAGCCTGGTGTGCTTGGAGGAG GGGAAGGCGGAAGCGGGGGGGTGGAGGAGACACCCCTTGACCGAGTACGG AGGGCAGTATGGGGGATGCTGTATGCCGATGATGCCGGCGTCGTATCGAG GTCTGCAGAAGGACTGGCGAGAATGA back to top
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