Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 13735.ENSPSIP00000001057 |
| ProteomeId | EsuBft1017_17 |
| Protein domains | SSF56672 |
| Protein domains | PTHR19446 |
| Protein domains | IPR005135 |
| Protein domains | IPR000477 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | rna-directed dna polymerase from mobile element jockey os:drosophila funebris gn:jockey\pol pe: [Automatic annotation] |
| Nb exon | 1 |
| Max annot lvl | 33208|Metazoa |
| Length | 2942 |
| Hectar predicted targeting category | other localisation |
| Evalue | 3.21e-76 |
| EggNOG OGs | KOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BHR3@33208|Metazoa,3CUIP@33213|Bilateria,48DAM@7711|Chordata,49HS5@7742|Vertebrata,4CMNI@8459|Testudines |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| Description | Reverse transcriptase (RNA-dependent DNA polymerase) |
| COG category | S |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0006259 |
| EC | 3.1 |
| GO | 0004518 |
| GO | 0016740 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1017_17a-0001 ID=EsuBft1017_17a-0001|Name=EsuBft1017_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2942bp|location=Sequence derived from alignment at Scaffold_189:604222..607163- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GTNGAGGGCCACACCGCTCCGGGACAAGAAGACAACTCTATGGGAAACAA
GGCAAGAACCGGGGTAACTATCACGTTAGCCCGAGTATCGCAAGAAAATA
GTAAAAATACGAAAAAGAGAGGAAAATGGAGGAAACGGAGGGGTCGGGCG
GCGCGTAGGCTAGCTAAGAGAGCAGCGCGCACCGCGCGAAAGAGACAGCA
GGGTCAACTTCTTAGGGTAGCAACCTGGAATGTGCGGACTTTGGCTGTAA
TCGGGGTCAATGGATACGGGCGAGCTTACAGCGTTCTACACGAGGCAGCG
AGACAAGACGTATCGGTGGTAGGAATGCAGGAGACACGGAGGGCAGGTCG
AACGGAATTTGCAGCAGCGGGTTTCCGGGTGTTCTGCTGTGGCACGGAGA
CTGGTGGAGTCCATGGTGTGGGGATAGCCGTCAAAGAGTCACTGTGCAAG
ACATCCACGTTCACTACGGAGTTTATCGACGAACGCCTTATGGCCATGAG
GCTTCTGTTGGCAGGCCACCGTGGAGCGGTCAACTTCGTAGCCGCGTCTG
CTCCAACCGAACCTTCAACCGCCTCCAGCAAGCGCGTGTTCTGGGGAAAA
CTTGACAGTCTCGTGCGGAGGATCCCTTCCAAAGAATGTGTGTATGTCCT
ACTGGACGCCAACGCGCGGACGGGAGATAGGTTGGACGGAGGGGACGGAA
GGGTAATAGGAATGTACGGGCGTGATGAGCTCAACGACAATGGCATGCTA
CTGTTGAACTTCGCAACGGAAAACAGGCTAGCTCTCACGAACACGTTCTT
TGAGACACGCAAGGGCGGAATATGGCACACATACAACGGTGTGTCGGGAA
ACGATTGCAAGCGCCTTGACTACATCCTGACAAGGCAGGCACATCACGGC
CGAGTATCTAACGTGGTCGTCATCCCCCAGCCGGTTCGCCCGGTCAAAGC
AGACTCAGACCACAATATGGTAGTAGCCACCGTCAACCTCGGTGGCAGGC
TTGCCCACAACCGTGCAGTTCGGACTAAACCGAAACAGAAGCAATTCAAC
CGACAGGAATTGCAGTTCGAAGCAGCACGGTGTGCGGTGACTAATCGACT
CCTCCTCAACCTCGACACACGACTTGACGAGCGAACAACCACCGCGGCGG
AATTGGCGACCGACTTTACCAATGCTCTCCTCGACGCAGCGCGGACGACC
CTGGGGGAGGAACCGCGGAGACGCCGCACGCAGGAGTGGTGTGAGACCCC
AGAGACGCGAGCAGCGCTGGAGCAGGCCCTTACCAAACGTCGGGAAGCGC
GCCGGGCGATGAGGGGCAACTGGAACTCAGCGACGTGGAGGGTTCTCAAA
GCAGCGTGTCAGGGAGTGGCTACAGCAGTCGAAACGGTCATTCATGCCCA
CCTGGACGCATATGTGACTGAGCTCGAAGAAATCTACAAAGATCGCGACA
TGCGAGGACTGTACCAACGCCTCAAGAGATCAGTGGGCCTCAGCGGGAGA
CAAGCGGGGGGACAGCAGTTCATCACGAACAAGGACGGCGTGTTGCTCCG
GAACAGGGACGACATCCTCCAGCGGTGGGCGAGATTCTTCAGCACCCTAC
TCAACACCAAATCCCCCACCCTGAACCCAGACATCATCGAACGAGTGACA
CAGCGGCAAGCGACACGTGACACTCAACGGTTGGGAGATGTGCCAAAACT
CGAGGAGGTGGCACGGGCAACGAAAGGCCTCAAGAACTGGAAGGCACCCG
GCCATGACTCCCTCCCTGCCGAGTTGCTCAAGATCGATGACGACGAACCC
TTCGTCCTGGGACACCTCCATACCATCCTCGTCAAGGTGTGGAACGGAGG
AGATTTTCCGCTAGAGTGGAAGGATGCAACCATCACGGTGCTGTACAACA
AGGGTGACCGGTCCAACTGTAACAACTACAGGAGGATTTCGCTACTATCT
CACGTAGGCAAGGTCCCCATCAAGATCATCACCAACCGTCTAAGCGCCTT
CGGCGAAGCCAACAACATCCTCCCGGAGGAACAGTGCGGATTTCGACCCG
GGCGATCCACCGTCGACATGCTGTTCGTCGTGCGCCGCCTCCAGGAGCTG
GGGCGGAGAAAGAAAATACCGCTCTACATGTGCTTCGTCGACTTGAACAA
GGCGTATGATTCGGTGGACCGAGAGATGCTATGGAAGGTGCTGGCCAGGG
CCGGGATTCCCGCGAAGCTGATCGAAGTCATCCGCCAATTCCACGATGGA
ATGCGGGCCCGGGTGCGCATGGACGACGGAGAACTGTCGGACTGGCTCTT
CGTGACACAGCGCGTGCGACAAGGATGTGTGCTATCCCCACTGCTGTTCA
ACATCTTCTTCACCGAGGTCCTCGAGGTCGTTATCATCCGATTCAGCGAG
GATGATGTTGTCCTGCGCAGCCTGGTGTGCTTGGAGGAGGGGAAGGCGGA
AGCGGGGGGGTGGAGGAGACACCCCTTGACCGAGTACGGAGGGCAGTATG
GGGGATGCTGTATGCCGATGATGCCGGCGTCGTATCGAGGTCTGCAGAAG
GACTGGCGAGAATGATGACCATCATCGTTGAGGTGTTCGGGGAGTTCGGG
CTAACGGTGTCGGAGAAGAAGACGGAGACGCTCCTGATGCGCGCAAAGGA
CAAGCCGACTACAACATCACAGCCCGCCCCGCCTCCACCACTGACCATCG
AAGCCGCGGGACAGAAATACGCCCAGACGACCGAGTTCCGGTACCTCGGT
GGCCTCGTCAACGAACATGGCGACCTCACCCGGGAGATCAACTACAGGAG
CAGAGGAGCGTGGGCGTGCCTCAGGCGATATGGCCGGGAGCTCTTCGACA
GACCGCAAGCGCCATTCCGACTCAAGATCCACCTGCTCCAGGCGGAGGCG
ATGGAGGCACTGCTGTACGGCTGCATGACATGGTCACCACTC back to topprotein sequence of EsuBft1017_17a-0001 >EsuBft1017_17 ID=EsuBft1017_17|Name=EsuBft1017_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=841bp
MGNKARTGVTITLARVSQENSKNTKKRGKWRKRRGRAARRLAKRAARTAR
KRQQGQLLRVATWNVRTLAVIGVNGYGRAYSVLHEAARQDVSVVGMQETR
RAGRTEFAAAGFRVFCCGTETGGVHGVGIAVKESLCKTSTFTTEFIDERL
MAMRLLLAGHRGAVNFVAASAPTEPSTASSKRVFWGKLDSLVRRIPSKEC
VYVLLDANARTGDRLDGGDGRVIGMYGRDELNDNGMLLLNFATENRLALT
NTFFETRKGGIWHTYNGVSGNDCKRLDYILTRQAHHGRVSNVVVIPQPVR
PVKADSDHNMVVATVNLGGRLAHNRAVRTKPKQKQFNRQELQFEAARCAV
TNRLLLNLDTRLDERTTTAAELATDFTNALLDAARTTLGEEPRRRRTQEW
CETPETRAALEQALTKRREARRAMRGNWNSATWRVLKAACQGVATAVETV
IHAHLDAYVTELEEIYKDRDMRGLYQRLKRSVGLSGRQAGGQQFITNKDG
VLLRNRDDILQRWARFFSTLLNTKSPTLNPDIIERVTQRQATRDTQRLGD
VPKLEEVARATKGLKNWKAPGHDSLPAELLKIDDDEPFVLGHLHTILVKV
WNGGDFPLEWKDATITVLYNKGDRSNCNNYRRISLLSHVGKVPIKIITNR
LSAFGEANNILPEEQCGFRPGRSTVDMLFVVRRLQELGRRKKIPLYMCFV
DLNKAYDSVDREMLWKVLARAGIPAKLIEVIRQFHDGMRARVRMDDGELS
DWLFVTQRVRQGCVLSPLLFNIFFTEVLEVVIIRFSEDDVVLRSLVCLEE
GKAEAGGWRRHPLTEYGGQYGGCCMPMMPASYRGLQKDWRE back to topmRNA from alignment at Scaffold_189:604222..607163- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1017_17a-0001 ID=EsuBft1017_17a-0001|Name=EsuBft1017_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2942bp|location=Sequence derived from alignment at Scaffold_189:604222..607163- (Ectocarpus subulatus male Bft15b)
GTNGAGGGCCACACCGCTCCGGGACAAGAAGACAACTCTATGGGAAACAA
GGCAAGAACCGGGGTAACTATCACGTTAGCCCGAGTATCGCAAGAAAATA
GTAAAAATACGAAAAAGAGAGGAAAATGGAGGAAACGGAGGGGTCGGGCG
GCGCGTAGGCTAGCTAAGAGAGCAGCGCGCACCGCGCGAAAGAGACAGCA
GGGTCAACTTCTTAGGGTAGCAACCTGGAATGTGCGGACTTTGGCTGTAA
TCGGGGTCAATGGATACGGGCGAGCTTACAGCGTTCTACACGAGGCAGCG
AGACAAGACGTATCGGTGGTAGGAATGCAGGAGACACGGAGGGCAGGTCG
AACGGAATTTGCAGCAGCGGGTTTCCGGGTGTTCTGCTGTGGCACGGAGA
CTGGTGGAGTCCATGGTGTGGGGATAGCCGTCAAAGAGTCACTGTGCAAG
ACATCCACGTTCACTACGGAGTTTATCGACGAACGCCTTATGGCCATGAG
GCTTCTGTTGGCAGGCCACCGTGGAGCGGTCAACTTCGTAGCCGCGTCTG
CTCCAACCGAACCTTCAACCGCCTCCAGCAAGCGCGTGTTCTGGGGAAAA
CTTGACAGTCTCGTGCGGAGGATCCCTTCCAAAGAATGTGTGTATGTCCT
ACTGGACGCCAACGCGCGGACGGGAGATAGGTTGGACGGAGGGGACGGAA
GGGTAATAGGAATGTACGGGCGTGATGAGCTCAACGACAATGGCATGCTA
CTGTTGAACTTCGCAACGGAAAACAGGCTAGCTCTCACGAACACGTTCTT
TGAGACACGCAAGGGCGGAATATGGCACACATACAACGGTGTGTCGGGAA
ACGATTGCAAGCGCCTTGACTACATCCTGACAAGGCAGGCACATCACGGC
CGAGTATCTAACGTGGTCGTCATCCCCCAGCCGGTTCGCCCGGTCAAAGC
AGACTCAGACCACAATATGGTAGTAGCCACCGTCAACCTCGGTGGCAGGC
TTGCCCACAACCGTGCAGTTCGGACTAAACCGAAACAGAAGCAATTCAAC
CGACAGGAATTGCAGTTCGAAGCAGCACGGTGTGCGGTGACTAATCGACT
CCTCCTCAACCTCGACACACGACTTGACGAGCGAACAACCACCGCGGCGG
AATTGGCGACCGACTTTACCAATGCTCTCCTCGACGCAGCGCGGACGACC
CTGGGGGAGGAACCGCGGAGACGCCGCACGCAGGAGTGGTGTGAGACCCC
AGAGACGCGAGCAGCGCTGGAGCAGGCCCTTACCAAACGTCGGGAAGCGC
GCCGGGCGATGAGGGGCAACTGGAACTCAGCGACGTGGAGGGTTCTCAAA
GCAGCGTGTCAGGGAGTGGCTACAGCAGTCGAAACGGTCATTCATGCCCA
CCTGGACGCATATGTGACTGAGCTCGAAGAAATCTACAAAGATCGCGACA
TGCGAGGACTGTACCAACGCCTCAAGAGATCAGTGGGCCTCAGCGGGAGA
CAAGCGGGGGGACAGCAGTTCATCACGAACAAGGACGGCGTGTTGCTCCG
GAACAGGGACGACATCCTCCAGCGGTGGGCGAGATTCTTCAGCACCCTAC
TCAACACCAAATCCCCCACCCTGAACCCAGACATCATCGAACGAGTGACA
CAGCGGCAAGCGACACGTGACACTCAACGGTTGGGAGATGTGCCAAAACT
CGAGGAGGTGGCACGGGCAACGAAAGGCCTCAAGAACTGGAAGGCACCCG
GCCATGACTCCCTCCCTGCCGAGTTGCTCAAGATCGATGACGACGAACCC
TTCGTCCTGGGACACCTCCATACCATCCTCGTCAAGGTGTGGAACGGAGG
AGATTTTCCGCTAGAGTGGAAGGATGCAACCATCACGGTGCTGTACAACA
AGGGTGACCGGTCCAACTGTAACAACTACAGGAGGATTTCGCTACTATCT
CACGTAGGCAAGGTCCCCATCAAGATCATCACCAACCGTCTAAGCGCCTT
CGGCGAAGCCAACAACATCCTCCCGGAGGAACAGTGCGGATTTCGACCCG
GGCGATCCACCGTCGACATGCTGTTCGTCGTGCGCCGCCTCCAGGAGCTG
GGGCGGAGAAAGAAAATACCGCTCTACATGTGCTTCGTCGACTTGAACAA
GGCGTATGATTCGGTGGACCGAGAGATGCTATGGAAGGTGCTGGCCAGGG
CCGGGATTCCCGCGAAGCTGATCGAAGTCATCCGCCAATTCCACGATGGA
ATGCGGGCCCGGGTGCGCATGGACGACGGAGAACTGTCGGACTGGCTCTT
CGTGACACAGCGCGTGCGACAAGGATGTGTGCTATCCCCACTGCTGTTCA
ACATCTTCTTCACCGAGGTCCTCGAGGTCGTTATCATCCGATTCAGCGAG
GATGATGTTGTCCTGCGCAGCCTGGTGTGCTTGGAGGAGGGGAAGGCGGA
AGCGGGGGGGTGGAGGAGACACCCCTTGACCGAGTACGGAGGGCAGTATG
GGGGATGCTGTATGCCGATGATGCCGGCGTCGTATCGAGGTCTGCAGAAG
GACTGGCGAGAATGATGACCATCATCGTTGAGGTGTTCGGGGAGTTCGGG
CTAACGGTGTCGGAGAAGAAGACGGAGACGCTCCTGATGCGCGCAAAGGA
CAAGCCGACTACAACATCACAGCCCGCCCCGCCTCCACCACTGACCATCG
AAGCCGCGGGACAGAAATACGCCCAGACGACCGAGTTCCGGTACCTCGGT
GGCCTCGTCAACGAACATGGCGACCTCACCCGGGAGATCAACTACAGGAG
CAGAGGAGCGTGGGCGTGCCTCAGGCGATATGGCCGGGAGCTCTTCGACA
GACCGCAAGCGCCATTCCGACTCAAGATCCACCTGCTCCAGGCGGAGGCG
ATGGAGGCACTGCTGTACGGCTGCATGACATGGTCACCACTC back to topCoding sequence (CDS) from alignment at Scaffold_189:604222..607163- >EsuBft1017_17a-0001 ID=EsuBft1017_17a-0001|Name=EsuBft1017_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2526bp|location=Sequence derived from alignment at Scaffold_189:604222..607163- (Ectocarpus subulatus male Bft15b)
ATGGGAAACAAGGCAAGAACCGGGGTAACTATCACGTTAGCCCGAGTATC
GCAAGAAAATAGTAAAAATACGAAAAAGAGAGGAAAATGGAGGAAACGGA
GGGGTCGGGCGGCGCGTAGGCTAGCTAAGAGAGCAGCGCGCACCGCGCGA
AAGAGACAGCAGGGTCAACTTCTTAGGGTAGCAACCTGGAATGTGCGGAC
TTTGGCTGTAATCGGGGTCAATGGATACGGGCGAGCTTACAGCGTTCTAC
ACGAGGCAGCGAGACAAGACGTATCGGTGGTAGGAATGCAGGAGACACGG
AGGGCAGGTCGAACGGAATTTGCAGCAGCGGGTTTCCGGGTGTTCTGCTG
TGGCACGGAGACTGGTGGAGTCCATGGTGTGGGGATAGCCGTCAAAGAGT
CACTGTGCAAGACATCCACGTTCACTACGGAGTTTATCGACGAACGCCTT
ATGGCCATGAGGCTTCTGTTGGCAGGCCACCGTGGAGCGGTCAACTTCGT
AGCCGCGTCTGCTCCAACCGAACCTTCAACCGCCTCCAGCAAGCGCGTGT
TCTGGGGAAAACTTGACAGTCTCGTGCGGAGGATCCCTTCCAAAGAATGT
GTGTATGTCCTACTGGACGCCAACGCGCGGACGGGAGATAGGTTGGACGG
AGGGGACGGAAGGGTAATAGGAATGTACGGGCGTGATGAGCTCAACGACA
ATGGCATGCTACTGTTGAACTTCGCAACGGAAAACAGGCTAGCTCTCACG
AACACGTTCTTTGAGACACGCAAGGGCGGAATATGGCACACATACAACGG
TGTGTCGGGAAACGATTGCAAGCGCCTTGACTACATCCTGACAAGGCAGG
CACATCACGGCCGAGTATCTAACGTGGTCGTCATCCCCCAGCCGGTTCGC
CCGGTCAAAGCAGACTCAGACCACAATATGGTAGTAGCCACCGTCAACCT
CGGTGGCAGGCTTGCCCACAACCGTGCAGTTCGGACTAAACCGAAACAGA
AGCAATTCAACCGACAGGAATTGCAGTTCGAAGCAGCACGGTGTGCGGTG
ACTAATCGACTCCTCCTCAACCTCGACACACGACTTGACGAGCGAACAAC
CACCGCGGCGGAATTGGCGACCGACTTTACCAATGCTCTCCTCGACGCAG
CGCGGACGACCCTGGGGGAGGAACCGCGGAGACGCCGCACGCAGGAGTGG
TGTGAGACCCCAGAGACGCGAGCAGCGCTGGAGCAGGCCCTTACCAAACG
TCGGGAAGCGCGCCGGGCGATGAGGGGCAACTGGAACTCAGCGACGTGGA
GGGTTCTCAAAGCAGCGTGTCAGGGAGTGGCTACAGCAGTCGAAACGGTC
ATTCATGCCCACCTGGACGCATATGTGACTGAGCTCGAAGAAATCTACAA
AGATCGCGACATGCGAGGACTGTACCAACGCCTCAAGAGATCAGTGGGCC
TCAGCGGGAGACAAGCGGGGGGACAGCAGTTCATCACGAACAAGGACGGC
GTGTTGCTCCGGAACAGGGACGACATCCTCCAGCGGTGGGCGAGATTCTT
CAGCACCCTACTCAACACCAAATCCCCCACCCTGAACCCAGACATCATCG
AACGAGTGACACAGCGGCAAGCGACACGTGACACTCAACGGTTGGGAGAT
GTGCCAAAACTCGAGGAGGTGGCACGGGCAACGAAAGGCCTCAAGAACTG
GAAGGCACCCGGCCATGACTCCCTCCCTGCCGAGTTGCTCAAGATCGATG
ACGACGAACCCTTCGTCCTGGGACACCTCCATACCATCCTCGTCAAGGTG
TGGAACGGAGGAGATTTTCCGCTAGAGTGGAAGGATGCAACCATCACGGT
GCTGTACAACAAGGGTGACCGGTCCAACTGTAACAACTACAGGAGGATTT
CGCTACTATCTCACGTAGGCAAGGTCCCCATCAAGATCATCACCAACCGT
CTAAGCGCCTTCGGCGAAGCCAACAACATCCTCCCGGAGGAACAGTGCGG
ATTTCGACCCGGGCGATCCACCGTCGACATGCTGTTCGTCGTGCGCCGCC
TCCAGGAGCTGGGGCGGAGAAAGAAAATACCGCTCTACATGTGCTTCGTC
GACTTGAACAAGGCGTATGATTCGGTGGACCGAGAGATGCTATGGAAGGT
GCTGGCCAGGGCCGGGATTCCCGCGAAGCTGATCGAAGTCATCCGCCAAT
TCCACGATGGAATGCGGGCCCGGGTGCGCATGGACGACGGAGAACTGTCG
GACTGGCTCTTCGTGACACAGCGCGTGCGACAAGGATGTGTGCTATCCCC
ACTGCTGTTCAACATCTTCTTCACCGAGGTCCTCGAGGTCGTTATCATCC
GATTCAGCGAGGATGATGTTGTCCTGCGCAGCCTGGTGTGCTTGGAGGAG
GGGAAGGCGGAAGCGGGGGGGTGGAGGAGACACCCCTTGACCGAGTACGG
AGGGCAGTATGGGGGATGCTGTATGCCGATGATGCCGGCGTCGTATCGAG
GTCTGCAGAAGGACTGGCGAGAATGA back to top
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