EsuBft1017_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1017_11a-0001
Unique NameEsuBft1017_11a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_189contigScaffold_189:557257..561276 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1017_11
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length237
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1017_11aEsuBft1017_11aEctocarpus subulatus male Bft15bgeneScaffold_189 557257..561276 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1017_11a-0001EsuBft1017_11Ectocarpus subulatus male Bft15bpolypeptideScaffold_189 557761..560997 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1017_11a-0001-exonagat-exon-30172Ectocarpus subulatus male Bft15bexonScaffold_189 557257..558946 -
EsuBft1017_11a-0001-exonEsuBft1017_11a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_189 560138..560228 -
EsuBft1017_11a-0001-exonagat-exon-30173Ectocarpus subulatus male Bft15bexonScaffold_189 560688..561276 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1017_11a-0001-exonagat-three_prime_utr-174Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_189 557257..557760 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1017_11a-0001-cdsEsuBft1017_11a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_189 557761..558946 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1017_11a-0001-exonagat-five_prime_utr-103Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_189 560998..561276 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1017_11a-0001 ID=EsuBft1017_11a-0001|Name=EsuBft1017_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2370bp|location=Sequence derived from alignment at Scaffold_189:557257..561276- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AATAACTCGCTTATAAGCTGAGTCTGCGGCGTGAGTATTCGGAGATTTTT
TTTTTCTCTCGGACGGGGGGGGGGGGCCTTCACGGAAATAGTTATCAAGA
TCCAAACGACCGCCTTACGCTCCGAGCAGTTTGTTTTCGCGCGAGCGATT
TTTTTCAGGGGCCACGTGCATGTTAGGGGGTGTCTAAGTGACAGTCCCGT
GCACACAGCCGTGGCTCCTCATTCGTCAACCACGACAGCACGCTACTGCT
GTAGGGACGCACGAATCCATAACACCACCATGGTCGTGGAGGCGCTACTC
CTACCCAGGAATGAACACTCCGATGATCTGCTGGAGTATCTCAGTCATAC
CAAACAGACTCCGAAGCACCTATCGCTCATCCAGAACGCGGCAGCTTACT
ACCAGTGCCTTGTCACCAAGCGGGAGGCCGGGACGATGTCAACCCAACAG
AGGGATGCACACGCCAGGACCAACTACAAGAACTTCACCGTTCCAAGCTT
CCTGTGTTGGTGGAAGACCGTGGTCATTCAAACCCCCCCGAGTTGGCTGA
CCCAAGACCTTATGGGCATGACGACCGGAAACGATTCAGGCTCTACAACA
CCGACGGTCTGGTTTGGTCCAAGTACCTATCGTGTGGCCGTGAGATCAGG
AGGGACTTCAACAGAATCTGGGACAGGCGATTTCCTGGTGGACGGCGACC
TCCCTTCCGGAATGCAGGCCGAAGATATCTGGGAGAATCTCCAGTTATAC
TTATGGTTCGAGGATAGGAGGACAGCTGGACGCAAGAAAGAAGTGGCTGC
CGCTAATGCACGCGCGAAGTCTCAACCCATAGTGCTGACGGGGGACGACG
ACGGCGAGACAGAGGCGGGGGTGGAAGGAGCGGGGGCGGGTGAAGGGGGG
GGTAAAGAGGCGGGACCTCTCGGCCACTCGGAAGCGGCATTGAGATACGC
CACAGCAAAAGCCCTGGCACGGGTCGAGGCTGCCAGGAATAATAAGGGGG
AGGATGCAGACGTGGTGGAGGAGATTGCAGCTGGCATCAAGCCGGAGACA
GCTGACGAGGAGGAGGGGAAGGAGCCTGAGGAAACGGCGGGGGACGCAGA
AACCGAAGATGACCTAACGCGTCTGTACGGACCCAAACCCGAACACTGGC
TGCACCCGGCTTCCCTCGTCTTCGCAATTTTCGGGAGGCCCGCTGGTACC
AACGAGGATGTCGATCTGAAGCTCAAAATGACTAGTGGGAGGCCCAGTGG
CACCAAAACGAAGGAGGCGGAGTCGGGATGTGCATCCGGGTCGGGATCTG
CGTCCCCGACTCCGGAAGACGAGAGTAAACCTTGCTTGAGCACGAAAGGC
CTTAAGTTGATGAACGGGGCCGGGGGTAAGCACAGCCGAGCGGAAATGAA
GACGTTGGCACACGAGGTCAACGCAGAGAACAAGAAGCTCAAGGGTGCAG
AAGCCGACGCTGTTCTGAAACGCCGTGCCTTGGAGGCCCTGTCCACTCCC
CCCGAAGATTCCAAGAGTTCGTTGGAGTTGGTCGAAAGTGTCAAGGCGCT
GACGAGGGCTGTCGTGAGCAAGGAGCTGCTCGACCAAGAGCAAGCCGAGC
GTGCGCGTTGGAACGAGAGGGTCCGCGCAATGGAGAGCAAGCTAGCCCTG
TGGGGCAAGATGGGGAAGGGGTCCACTGCAGAGGCTCAGGCGTTGCAAGA
AGAGCTCCTCCACGCGTATGACAACCCCGTCGTCGCCCCCCTGTCTGTGG
CAGCTCCAAGCGTGGCCGAAGGCGACGGAGAAGGGGTAGCCGGGGGTGAG
GTGGCCGGGACGGAGGGTGGGGGAGACATGAATGATGCGGTTGAAGTTTC
GGAAGTCAGGATTTAAGGGGATGCACGGCGGTGGTGATTCCCACAAATCT
ATGGTTGTGTGCGGTTCGATGGTGCAGACTCCAAATTGATTTAGGGGTGA
CTTCCAACGCAGCTGGAGGGTAACTTGATTGCGGTGCGTAGAGACGGGGG
GATGGACCTTTGCTTGTGTGTTCTCGTGTTTCTTTTTCAGGGGTGCTTAA
GGCTGAGCTACCGCGTGTTTGCAGATTTCAACATGTGCGTATTGGTTCCG
AATCATGTGAGAGGGGGTGCGTGTTTTCGGAGGTAGGTAACGACCCCGTC
CTCTGCTGTTCCCCCGGCAGTGTCGACAATATACGCAGGTCTGGTTCGTG
CCAGCCGTCCACGTACTTCTTGTGGGTAGTGTCGTACGTTTTGACGTTGC
AATGTCCGATACATTGGCCTGTATGCTTGTGCTCATGCCACTTCAGTACA
CGTAGTGTAGAAATGTTGATTGACATGCATGAGAACAACCACAAGACCCA
AGTCTATCACCCATCTCTCC
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protein sequence of EsuBft1017_11a-0001

>EsuBft1017_11 ID=EsuBft1017_11|Name=EsuBft1017_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=528bp
MVVEALLLPRNEHSDDLLEYLSHTKQTPKHLSLIQNAAAYYQCLVTKREA
GTMSTQQRDAHARTNYKNFTVPSFLCWWKTVVIQTPPSWLTQDLMGMTTG
NDSGSTTPTVWFGPSTYRVAVRSGGTSTESGTGDFLVDGDLPSGMQAEDI
WENLQLYLWFEDRRTAGRKKEVAAANARAKSQPIVLTGDDDGETEAGVEG
AGAGEGGGKEAGPLGHSEAALRYATAKALARVEAARNNKGEDADVVEEIA
AGIKPETADEEEGKEPEETAGDAETEDDLTRLYGPKPEHWLHPASLVFAI
FGRPAGTNEDVDLKLKMTSGRPSGTKTKEAESGCASGSGSASPTPEDESK
PCLSTKGLKLMNGAGGKHSRAEMKTLAHEVNAENKKLKGAEADAVLKRRA
LEALSTPPEDSKSSLELVESVKALTRAVVSKELLDQEQAERARWNERVRA
MESKLALWGKMGKGSTAEAQALQEELLHAYDNPVVAPLSVAAPSVAEGDG
EGVAGGEVAGTEGGGDMNDAVEVSEVRI
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mRNA from alignment at Scaffold_189:557257..561276-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1017_11a-0001 ID=EsuBft1017_11a-0001|Name=EsuBft1017_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4020bp|location=Sequence derived from alignment at Scaffold_189:557257..561276- (Ectocarpus subulatus male Bft15b)
AATAACTCGCTTATAAGCTGAGTCTGCGGCGTGAGTATTCGGAGATTTTT
TTTTTCTCTCGGACGGGGGGGGGGGGCCTTCACGGAAATAGTTATCAAGA
TCCAAACGACCGCCTTACGCTCCGAGCAGTTTGTTTTCGCGCGAGCGATT
TTTTTCAGGGGCCACGTGCATGTTAGGGGGTGTCTAAGTGACAGTCCCGT
GCACACAGCCGTGGCTCCTCATTCGTCAACCACGACAGCACGCTACTGCT
GTAGGGACGCACGAATCCATAACACCACCATGGTCGTGGAGGCGCTACTC
CTACCCAGGAATGAACACTCCGATGATCTGCTGGAGTATCTCAGTCATAC
CAAACAGACTCCGAAGCACCTATCGCTCATCCAGAACGCGGCAGCTTACT
ACCAGTGCCTTGTCACCAAGCGGGAGGCCGGGACGATGTCAACCCAACAG
AGGGATGCACACGCCAGGACCAACTACAAGAACTTCACCGTTCCAAGCTT
CCTGTGTTGGTGGAAGACCGTGGTCATTCAAACCCCCCCGAGTTGGCTGA
CCCAAGACCTTATGGGCATGACGACCGGAAACGATTCAGGTAAGGGATAG
ACACGCACAAAGCATAGGCTGGCTGTACAACTGCANAACTACAGGAACTT
AACCGTTCCAAGCTTCCTGTGTTGGTGGAAGACCGTGGTCATTCAAACCC
CCCCGAGTTGGCTGACCCAAGACCTTATGGGCATGACCACCGGAAACGAT
TCAGGTAAGGGATAGACACGCACAAAGCACAGGCTGACTGTACAACTGCA
ATAATACCGCTGCTGTACAATAGTGTAGGCGCTCTCTCCCGCTGGTGCTG
CGGTGCGTAGTCGTGCTGTTGGTACATCATGGCTGTAATAGACTTGTCGG
GCACAAACCTTGGGCACACATACTCCCAAGGGTTTCGTGGGAAAAATTTC
TGTACAACGAGAGATGAACACAAATCTTACCCACACCTTCTACGCATACG
GTGTTCTGCCCCGGTCGCGATGCCGCTGCCTTTTGCCGCAGCCAAAAGGC
TCTACAACACCGACGGTCTGGTTTGGTCCAAGTACCTATCGTGTGGCCGT
GAGATCAGGAGGGACTTCAACAGAATCTGGGACAGGCGAGTGGATTCGGA
TTATGTAGGTAGAGGCCGTGCTTTAGTGGCGGCGCCCCGCTCGTCGCTCG
TGTTGCGCAATTTTTTGTACTAGAAGTACAGGCGGGACTTGGCCGCCCGG
TACTGTGGCACAAATGACAAGGGGCGCAAGAGGCGCACACTTCACCTGCG
TTCTGGGCAATACACGGGAGACATAGCATGCAGAGCACCCAGCACATCAC
ACACAGAAGGAGGAGTGTGGGACATCGAAGCAAGACGCCGTCGCTGCTGT
AGCTAACGGCAGGAAGAGAAGCGGCTTGTTGGCGTGCGTGCTTGCGTGTT
GTGTTGATATGCCTACAAAACAGCAATACGAGTGGACATAAGGGGGCAGT
CATTCACAGGACGGACAGATCTAGGTGATATCTCGCTCACTCCGCATCTA
CTGCAGCAACCTGCTTGCGAATCGACGTAGTGGACGTCGAGATATACAGA
TGTTTCGCGATAGAATGGCCCAGAAGTTCTTCCTTTTTTACTCTTTTTAT
TCCAGGCACCGCCAGCAATTGCCAAAAACCCGTTGCTGCAACTTCGAGTT
GGTGGTGACGGGTGCTATGCATACAGGCCGAAACAGATGAATGCGCCTGA
ACGCGAAAAATTACAGCGTTATTCTCCGTTTCGACAGTCCCAACTCGATG
TAGTGCAAGGCGCAAGGCGTAACCCAGCACAGCAGCAGCAGTAGCAGCAT
GAGCCGAGCCTCAGGCACCAGTTGTACTTAAAGACTACAGTATTCTGCGC
AGGCACCTGCGGTGGTGGACGAAAGCTTTGTTTGTCTGTCATGTTGTAGC
TGCTGCTTGACTTAAATGAGCTATAATAGTGCTGCGGCGTTGATTTAGGG
TTACGTGTGAATGCTGCTGATGTTGCTGAAGAAGTTTTTCATCTACTCTC
CGTGTCATGTGTATTTGCGAAGACTCTGTCATCGGTATTCATCTCGCATT
GCATCATTGTGTATTACCCCCGGGTTGCCGCTATCGGAAGGGAAGTGGGT
AAAGAGTGGTACCTACCTCGCTCGTAGTACCTACACGTTGCCCGGTACCA
AGTTTTCTTTTAGTCGCTCGAAATGGTTTTGGTTGTCGAATCAATTTGTC
CACGCGAAACGCGCACTTCGAAGGTGTTACTTTGAGAGCTCAAGTTGCAC
CCGAATTCCCGCGTGTGTCGCCCTGTTCAGTTTCCTGGTGGACGGCGACC
TCCCTTCCGGAATGCAGGCCGAAGATATCTGGGAGAATCTCCAGTTATAC
TTATGGTTCGAGGATAGGAGGACAGCTGGACGCAAGAAAGAAGTGGCTGC
CGCTAATGCACGCGCGAAGTCTCAACCCATAGTGCTGACGGGGGACGACG
ACGGCGAGACAGAGGCGGGGGTGGAAGGAGCGGGGGCGGGTGAAGGGGGG
GGTAAAGAGGCGGGACCTCTCGGCCACTCGGAAGCGGCATTGAGATACGC
CACAGCAAAAGCCCTGGCACGGGTCGAGGCTGCCAGGAATAATAAGGGGG
AGGATGCAGACGTGGTGGAGGAGATTGCAGCTGGCATCAAGCCGGAGACA
GCTGACGAGGAGGAGGGGAAGGAGCCTGAGGAAACGGCGGGGGACGCAGA
AACCGAAGATGACCTAACGCGTCTGTACGGACCCAAACCCGAACACTGGC
TGCACCCGGCTTCCCTCGTCTTCGCAATTTTCGGGAGGCCCGCTGGTACC
AACGAGGATGTCGATCTGAAGCTCAAAATGACTAGTGGGAGGCCCAGTGG
CACCAAAACGAAGGAGGCGGAGTCGGGATGTGCATCCGGGTCGGGATCTG
CGTCCCCGACTCCGGAAGACGAGAGTAAACCTTGCTTGAGCACGAAAGGC
CTTAAGTTGATGAACGGGGCCGGGGGTAAGCACAGCCGAGCGGAAATGAA
GACGTTGGCACACGAGGTCAACGCAGAGAACAAGAAGCTCAAGGGTGCAG
AAGCCGACGCTGTTCTGAAACGCCGTGCCTTGGAGGCCCTGTCCACTCCC
CCCGAAGATTCCAAGAGTTCGTTGGAGTTGGTCGAAAGTGTCAAGGCGCT
GACGAGGGCTGTCGTGAGCAAGGAGCTGCTCGACCAAGAGCAAGCCGAGC
GTGCGCGTTGGAACGAGAGGGTCCGCGCAATGGAGAGCAAGCTAGCCCTG
TGGGGCAAGATGGGGAAGGGGTCCACTGCAGAGGCTCAGGCGTTGCAAGA
AGAGCTCCTCCACGCGTATGACAACCCCGTCGTCGCCCCCCTGTCTGTGG
CAGCTCCAAGCGTGGCCGAAGGCGACGGAGAAGGGGTAGCCGGGGGTGAG
GTGGCCGGGACGGAGGGTGGGGGAGACATGAATGATGCGGTTGAAGTTTC
GGAAGTCAGGATTTAAGGGGATGCACGGCGGTGGTGATTCCCACAAATCT
ATGGTTGTGTGCGGTTCGATGGTGCAGACTCCAAATTGATTTAGGGGTGA
CTTCCAACGCAGCTGGAGGGTAACTTGATTGCGGTGCGTAGAGACGGGGG
GATGGACCTTTGCTTGTGTGTTCTCGTGTTTCTTTTTCAGGGGTGCTTAA
GGCTGAGCTACCGCGTGTTTGCAGATTTCAACATGTGCGTATTGGTTCCG
AATCATGTGAGAGGGGGTGCGTGTTTTCGGAGGTAGGTAACGACCCCGTC
CTCTGCTGTTCCCCCGGCAGTGTCGACAATATACGCAGGTCTGGTTCGTG
CCAGCCGTCCACGTACTTCTTGTGGGTAGTGTCGTACGTTTTGACGTTGC
AATGTCCGATACATTGGCCTGTATGCTTGTGCTCATGCCACTTCAGTACA
CGTAGTGTAGAAATGTTGATTGACATGCATGAGAACAACCACAAGACCCA
AGTCTATCACCCATCTCTCC
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Coding sequence (CDS) from alignment at Scaffold_189:557257..561276-

>EsuBft1017_11a-0001 ID=EsuBft1017_11a-0001|Name=EsuBft1017_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1587bp|location=Sequence derived from alignment at Scaffold_189:557257..561276- (Ectocarpus subulatus male Bft15b)
ATGGTCGTGGAGGCGCTACTCCTACCCAGGAATGAACACTCCGATGATCT
GCTGGAGTATCTCAGTCATACCAAACAGACTCCGAAGCACCTATCGCTCA
TCCAGAACGCGGCAGCTTACTACCAGTGCCTTGTCACCAAGCGGGAGGCC
GGGACGATGTCAACCCAACAGAGGGATGCACACGCCAGGACCAACTACAA
GAACTTCACCGTTCCAAGCTTCCTGTGTTGGTGGAAGACCGTGGTCATTC
AAACCCCCCCGAGTTGGCTGACCCAAGACCTTATGGGCATGACGACCGGA
AACGATTCAGGCTCTACAACACCGACGGTCTGGTTTGGTCCAAGTACCTA
TCGTGTGGCCGTGAGATCAGGAGGGACTTCAACAGAATCTGGGACAGGCG
ATTTCCTGGTGGACGGCGACCTCCCTTCCGGAATGCAGGCCGAAGATATC
TGGGAGAATCTCCAGTTATACTTATGGTTCGAGGATAGGAGGACAGCTGG
ACGCAAGAAAGAAGTGGCTGCCGCTAATGCACGCGCGAAGTCTCAACCCA
TAGTGCTGACGGGGGACGACGACGGCGAGACAGAGGCGGGGGTGGAAGGA
GCGGGGGCGGGTGAAGGGGGGGGTAAAGAGGCGGGACCTCTCGGCCACTC
GGAAGCGGCATTGAGATACGCCACAGCAAAAGCCCTGGCACGGGTCGAGG
CTGCCAGGAATAATAAGGGGGAGGATGCAGACGTGGTGGAGGAGATTGCA
GCTGGCATCAAGCCGGAGACAGCTGACGAGGAGGAGGGGAAGGAGCCTGA
GGAAACGGCGGGGGACGCAGAAACCGAAGATGACCTAACGCGTCTGTACG
GACCCAAACCCGAACACTGGCTGCACCCGGCTTCCCTCGTCTTCGCAATT
TTCGGGAGGCCCGCTGGTACCAACGAGGATGTCGATCTGAAGCTCAAAAT
GACTAGTGGGAGGCCCAGTGGCACCAAAACGAAGGAGGCGGAGTCGGGAT
GTGCATCCGGGTCGGGATCTGCGTCCCCGACTCCGGAAGACGAGAGTAAA
CCTTGCTTGAGCACGAAAGGCCTTAAGTTGATGAACGGGGCCGGGGGTAA
GCACAGCCGAGCGGAAATGAAGACGTTGGCACACGAGGTCAACGCAGAGA
ACAAGAAGCTCAAGGGTGCAGAAGCCGACGCTGTTCTGAAACGCCGTGCC
TTGGAGGCCCTGTCCACTCCCCCCGAAGATTCCAAGAGTTCGTTGGAGTT
GGTCGAAAGTGTCAAGGCGCTGACGAGGGCTGTCGTGAGCAAGGAGCTGC
TCGACCAAGAGCAAGCCGAGCGTGCGCGTTGGAACGAGAGGGTCCGCGCA
ATGGAGAGCAAGCTAGCCCTGTGGGGCAAGATGGGGAAGGGGTCCACTGC
AGAGGCTCAGGCGTTGCAAGAAGAGCTCCTCCACGCGTATGACAACCCCG
TCGTCGCCCCCCTGTCTGTGGCAGCTCCAAGCGTGGCCGAAGGCGACGGA
GAAGGGGTAGCCGGGGGTGAGGTGGCCGGGACGGAGGGTGGGGGAGACAT
GAATGATGCGGTTGAAGTTTCGGAAGTCAGGATTTAA
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