Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft1017_11 |
| Protein domains | Coil |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 3 |
| Length | 237 |
| Hectar predicted targeting category | other localisation |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1017_11a-0001 ID=EsuBft1017_11a-0001|Name=EsuBft1017_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2370bp|location=Sequence derived from alignment at Scaffold_189:557257..561276- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
AATAACTCGCTTATAAGCTGAGTCTGCGGCGTGAGTATTCGGAGATTTTT
TTTTTCTCTCGGACGGGGGGGGGGGGCCTTCACGGAAATAGTTATCAAGA
TCCAAACGACCGCCTTACGCTCCGAGCAGTTTGTTTTCGCGCGAGCGATT
TTTTTCAGGGGCCACGTGCATGTTAGGGGGTGTCTAAGTGACAGTCCCGT
GCACACAGCCGTGGCTCCTCATTCGTCAACCACGACAGCACGCTACTGCT
GTAGGGACGCACGAATCCATAACACCACCATGGTCGTGGAGGCGCTACTC
CTACCCAGGAATGAACACTCCGATGATCTGCTGGAGTATCTCAGTCATAC
CAAACAGACTCCGAAGCACCTATCGCTCATCCAGAACGCGGCAGCTTACT
ACCAGTGCCTTGTCACCAAGCGGGAGGCCGGGACGATGTCAACCCAACAG
AGGGATGCACACGCCAGGACCAACTACAAGAACTTCACCGTTCCAAGCTT
CCTGTGTTGGTGGAAGACCGTGGTCATTCAAACCCCCCCGAGTTGGCTGA
CCCAAGACCTTATGGGCATGACGACCGGAAACGATTCAGGCTCTACAACA
CCGACGGTCTGGTTTGGTCCAAGTACCTATCGTGTGGCCGTGAGATCAGG
AGGGACTTCAACAGAATCTGGGACAGGCGATTTCCTGGTGGACGGCGACC
TCCCTTCCGGAATGCAGGCCGAAGATATCTGGGAGAATCTCCAGTTATAC
TTATGGTTCGAGGATAGGAGGACAGCTGGACGCAAGAAAGAAGTGGCTGC
CGCTAATGCACGCGCGAAGTCTCAACCCATAGTGCTGACGGGGGACGACG
ACGGCGAGACAGAGGCGGGGGTGGAAGGAGCGGGGGCGGGTGAAGGGGGG
GGTAAAGAGGCGGGACCTCTCGGCCACTCGGAAGCGGCATTGAGATACGC
CACAGCAAAAGCCCTGGCACGGGTCGAGGCTGCCAGGAATAATAAGGGGG
AGGATGCAGACGTGGTGGAGGAGATTGCAGCTGGCATCAAGCCGGAGACA
GCTGACGAGGAGGAGGGGAAGGAGCCTGAGGAAACGGCGGGGGACGCAGA
AACCGAAGATGACCTAACGCGTCTGTACGGACCCAAACCCGAACACTGGC
TGCACCCGGCTTCCCTCGTCTTCGCAATTTTCGGGAGGCCCGCTGGTACC
AACGAGGATGTCGATCTGAAGCTCAAAATGACTAGTGGGAGGCCCAGTGG
CACCAAAACGAAGGAGGCGGAGTCGGGATGTGCATCCGGGTCGGGATCTG
CGTCCCCGACTCCGGAAGACGAGAGTAAACCTTGCTTGAGCACGAAAGGC
CTTAAGTTGATGAACGGGGCCGGGGGTAAGCACAGCCGAGCGGAAATGAA
GACGTTGGCACACGAGGTCAACGCAGAGAACAAGAAGCTCAAGGGTGCAG
AAGCCGACGCTGTTCTGAAACGCCGTGCCTTGGAGGCCCTGTCCACTCCC
CCCGAAGATTCCAAGAGTTCGTTGGAGTTGGTCGAAAGTGTCAAGGCGCT
GACGAGGGCTGTCGTGAGCAAGGAGCTGCTCGACCAAGAGCAAGCCGAGC
GTGCGCGTTGGAACGAGAGGGTCCGCGCAATGGAGAGCAAGCTAGCCCTG
TGGGGCAAGATGGGGAAGGGGTCCACTGCAGAGGCTCAGGCGTTGCAAGA
AGAGCTCCTCCACGCGTATGACAACCCCGTCGTCGCCCCCCTGTCTGTGG
CAGCTCCAAGCGTGGCCGAAGGCGACGGAGAAGGGGTAGCCGGGGGTGAG
GTGGCCGGGACGGAGGGTGGGGGAGACATGAATGATGCGGTTGAAGTTTC
GGAAGTCAGGATTTAAGGGGATGCACGGCGGTGGTGATTCCCACAAATCT
ATGGTTGTGTGCGGTTCGATGGTGCAGACTCCAAATTGATTTAGGGGTGA
CTTCCAACGCAGCTGGAGGGTAACTTGATTGCGGTGCGTAGAGACGGGGG
GATGGACCTTTGCTTGTGTGTTCTCGTGTTTCTTTTTCAGGGGTGCTTAA
GGCTGAGCTACCGCGTGTTTGCAGATTTCAACATGTGCGTATTGGTTCCG
AATCATGTGAGAGGGGGTGCGTGTTTTCGGAGGTAGGTAACGACCCCGTC
CTCTGCTGTTCCCCCGGCAGTGTCGACAATATACGCAGGTCTGGTTCGTG
CCAGCCGTCCACGTACTTCTTGTGGGTAGTGTCGTACGTTTTGACGTTGC
AATGTCCGATACATTGGCCTGTATGCTTGTGCTCATGCCACTTCAGTACA
CGTAGTGTAGAAATGTTGATTGACATGCATGAGAACAACCACAAGACCCA
AGTCTATCACCCATCTCTCC back to topprotein sequence of EsuBft1017_11a-0001 >EsuBft1017_11 ID=EsuBft1017_11|Name=EsuBft1017_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=528bp
MVVEALLLPRNEHSDDLLEYLSHTKQTPKHLSLIQNAAAYYQCLVTKREA
GTMSTQQRDAHARTNYKNFTVPSFLCWWKTVVIQTPPSWLTQDLMGMTTG
NDSGSTTPTVWFGPSTYRVAVRSGGTSTESGTGDFLVDGDLPSGMQAEDI
WENLQLYLWFEDRRTAGRKKEVAAANARAKSQPIVLTGDDDGETEAGVEG
AGAGEGGGKEAGPLGHSEAALRYATAKALARVEAARNNKGEDADVVEEIA
AGIKPETADEEEGKEPEETAGDAETEDDLTRLYGPKPEHWLHPASLVFAI
FGRPAGTNEDVDLKLKMTSGRPSGTKTKEAESGCASGSGSASPTPEDESK
PCLSTKGLKLMNGAGGKHSRAEMKTLAHEVNAENKKLKGAEADAVLKRRA
LEALSTPPEDSKSSLELVESVKALTRAVVSKELLDQEQAERARWNERVRA
MESKLALWGKMGKGSTAEAQALQEELLHAYDNPVVAPLSVAAPSVAEGDG
EGVAGGEVAGTEGGGDMNDAVEVSEVRI back to topmRNA from alignment at Scaffold_189:557257..561276- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1017_11a-0001 ID=EsuBft1017_11a-0001|Name=EsuBft1017_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4020bp|location=Sequence derived from alignment at Scaffold_189:557257..561276- (Ectocarpus subulatus male Bft15b)
AATAACTCGCTTATAAGCTGAGTCTGCGGCGTGAGTATTCGGAGATTTTT
TTTTTCTCTCGGACGGGGGGGGGGGGCCTTCACGGAAATAGTTATCAAGA
TCCAAACGACCGCCTTACGCTCCGAGCAGTTTGTTTTCGCGCGAGCGATT
TTTTTCAGGGGCCACGTGCATGTTAGGGGGTGTCTAAGTGACAGTCCCGT
GCACACAGCCGTGGCTCCTCATTCGTCAACCACGACAGCACGCTACTGCT
GTAGGGACGCACGAATCCATAACACCACCATGGTCGTGGAGGCGCTACTC
CTACCCAGGAATGAACACTCCGATGATCTGCTGGAGTATCTCAGTCATAC
CAAACAGACTCCGAAGCACCTATCGCTCATCCAGAACGCGGCAGCTTACT
ACCAGTGCCTTGTCACCAAGCGGGAGGCCGGGACGATGTCAACCCAACAG
AGGGATGCACACGCCAGGACCAACTACAAGAACTTCACCGTTCCAAGCTT
CCTGTGTTGGTGGAAGACCGTGGTCATTCAAACCCCCCCGAGTTGGCTGA
CCCAAGACCTTATGGGCATGACGACCGGAAACGATTCAGGTAAGGGATAG
ACACGCACAAAGCATAGGCTGGCTGTACAACTGCANAACTACAGGAACTT
AACCGTTCCAAGCTTCCTGTGTTGGTGGAAGACCGTGGTCATTCAAACCC
CCCCGAGTTGGCTGACCCAAGACCTTATGGGCATGACCACCGGAAACGAT
TCAGGTAAGGGATAGACACGCACAAAGCACAGGCTGACTGTACAACTGCA
ATAATACCGCTGCTGTACAATAGTGTAGGCGCTCTCTCCCGCTGGTGCTG
CGGTGCGTAGTCGTGCTGTTGGTACATCATGGCTGTAATAGACTTGTCGG
GCACAAACCTTGGGCACACATACTCCCAAGGGTTTCGTGGGAAAAATTTC
TGTACAACGAGAGATGAACACAAATCTTACCCACACCTTCTACGCATACG
GTGTTCTGCCCCGGTCGCGATGCCGCTGCCTTTTGCCGCAGCCAAAAGGC
TCTACAACACCGACGGTCTGGTTTGGTCCAAGTACCTATCGTGTGGCCGT
GAGATCAGGAGGGACTTCAACAGAATCTGGGACAGGCGAGTGGATTCGGA
TTATGTAGGTAGAGGCCGTGCTTTAGTGGCGGCGCCCCGCTCGTCGCTCG
TGTTGCGCAATTTTTTGTACTAGAAGTACAGGCGGGACTTGGCCGCCCGG
TACTGTGGCACAAATGACAAGGGGCGCAAGAGGCGCACACTTCACCTGCG
TTCTGGGCAATACACGGGAGACATAGCATGCAGAGCACCCAGCACATCAC
ACACAGAAGGAGGAGTGTGGGACATCGAAGCAAGACGCCGTCGCTGCTGT
AGCTAACGGCAGGAAGAGAAGCGGCTTGTTGGCGTGCGTGCTTGCGTGTT
GTGTTGATATGCCTACAAAACAGCAATACGAGTGGACATAAGGGGGCAGT
CATTCACAGGACGGACAGATCTAGGTGATATCTCGCTCACTCCGCATCTA
CTGCAGCAACCTGCTTGCGAATCGACGTAGTGGACGTCGAGATATACAGA
TGTTTCGCGATAGAATGGCCCAGAAGTTCTTCCTTTTTTACTCTTTTTAT
TCCAGGCACCGCCAGCAATTGCCAAAAACCCGTTGCTGCAACTTCGAGTT
GGTGGTGACGGGTGCTATGCATACAGGCCGAAACAGATGAATGCGCCTGA
ACGCGAAAAATTACAGCGTTATTCTCCGTTTCGACAGTCCCAACTCGATG
TAGTGCAAGGCGCAAGGCGTAACCCAGCACAGCAGCAGCAGTAGCAGCAT
GAGCCGAGCCTCAGGCACCAGTTGTACTTAAAGACTACAGTATTCTGCGC
AGGCACCTGCGGTGGTGGACGAAAGCTTTGTTTGTCTGTCATGTTGTAGC
TGCTGCTTGACTTAAATGAGCTATAATAGTGCTGCGGCGTTGATTTAGGG
TTACGTGTGAATGCTGCTGATGTTGCTGAAGAAGTTTTTCATCTACTCTC
CGTGTCATGTGTATTTGCGAAGACTCTGTCATCGGTATTCATCTCGCATT
GCATCATTGTGTATTACCCCCGGGTTGCCGCTATCGGAAGGGAAGTGGGT
AAAGAGTGGTACCTACCTCGCTCGTAGTACCTACACGTTGCCCGGTACCA
AGTTTTCTTTTAGTCGCTCGAAATGGTTTTGGTTGTCGAATCAATTTGTC
CACGCGAAACGCGCACTTCGAAGGTGTTACTTTGAGAGCTCAAGTTGCAC
CCGAATTCCCGCGTGTGTCGCCCTGTTCAGTTTCCTGGTGGACGGCGACC
TCCCTTCCGGAATGCAGGCCGAAGATATCTGGGAGAATCTCCAGTTATAC
TTATGGTTCGAGGATAGGAGGACAGCTGGACGCAAGAAAGAAGTGGCTGC
CGCTAATGCACGCGCGAAGTCTCAACCCATAGTGCTGACGGGGGACGACG
ACGGCGAGACAGAGGCGGGGGTGGAAGGAGCGGGGGCGGGTGAAGGGGGG
GGTAAAGAGGCGGGACCTCTCGGCCACTCGGAAGCGGCATTGAGATACGC
CACAGCAAAAGCCCTGGCACGGGTCGAGGCTGCCAGGAATAATAAGGGGG
AGGATGCAGACGTGGTGGAGGAGATTGCAGCTGGCATCAAGCCGGAGACA
GCTGACGAGGAGGAGGGGAAGGAGCCTGAGGAAACGGCGGGGGACGCAGA
AACCGAAGATGACCTAACGCGTCTGTACGGACCCAAACCCGAACACTGGC
TGCACCCGGCTTCCCTCGTCTTCGCAATTTTCGGGAGGCCCGCTGGTACC
AACGAGGATGTCGATCTGAAGCTCAAAATGACTAGTGGGAGGCCCAGTGG
CACCAAAACGAAGGAGGCGGAGTCGGGATGTGCATCCGGGTCGGGATCTG
CGTCCCCGACTCCGGAAGACGAGAGTAAACCTTGCTTGAGCACGAAAGGC
CTTAAGTTGATGAACGGGGCCGGGGGTAAGCACAGCCGAGCGGAAATGAA
GACGTTGGCACACGAGGTCAACGCAGAGAACAAGAAGCTCAAGGGTGCAG
AAGCCGACGCTGTTCTGAAACGCCGTGCCTTGGAGGCCCTGTCCACTCCC
CCCGAAGATTCCAAGAGTTCGTTGGAGTTGGTCGAAAGTGTCAAGGCGCT
GACGAGGGCTGTCGTGAGCAAGGAGCTGCTCGACCAAGAGCAAGCCGAGC
GTGCGCGTTGGAACGAGAGGGTCCGCGCAATGGAGAGCAAGCTAGCCCTG
TGGGGCAAGATGGGGAAGGGGTCCACTGCAGAGGCTCAGGCGTTGCAAGA
AGAGCTCCTCCACGCGTATGACAACCCCGTCGTCGCCCCCCTGTCTGTGG
CAGCTCCAAGCGTGGCCGAAGGCGACGGAGAAGGGGTAGCCGGGGGTGAG
GTGGCCGGGACGGAGGGTGGGGGAGACATGAATGATGCGGTTGAAGTTTC
GGAAGTCAGGATTTAAGGGGATGCACGGCGGTGGTGATTCCCACAAATCT
ATGGTTGTGTGCGGTTCGATGGTGCAGACTCCAAATTGATTTAGGGGTGA
CTTCCAACGCAGCTGGAGGGTAACTTGATTGCGGTGCGTAGAGACGGGGG
GATGGACCTTTGCTTGTGTGTTCTCGTGTTTCTTTTTCAGGGGTGCTTAA
GGCTGAGCTACCGCGTGTTTGCAGATTTCAACATGTGCGTATTGGTTCCG
AATCATGTGAGAGGGGGTGCGTGTTTTCGGAGGTAGGTAACGACCCCGTC
CTCTGCTGTTCCCCCGGCAGTGTCGACAATATACGCAGGTCTGGTTCGTG
CCAGCCGTCCACGTACTTCTTGTGGGTAGTGTCGTACGTTTTGACGTTGC
AATGTCCGATACATTGGCCTGTATGCTTGTGCTCATGCCACTTCAGTACA
CGTAGTGTAGAAATGTTGATTGACATGCATGAGAACAACCACAAGACCCA
AGTCTATCACCCATCTCTCC back to topCoding sequence (CDS) from alignment at Scaffold_189:557257..561276- >EsuBft1017_11a-0001 ID=EsuBft1017_11a-0001|Name=EsuBft1017_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1587bp|location=Sequence derived from alignment at Scaffold_189:557257..561276- (Ectocarpus subulatus male Bft15b)
ATGGTCGTGGAGGCGCTACTCCTACCCAGGAATGAACACTCCGATGATCT
GCTGGAGTATCTCAGTCATACCAAACAGACTCCGAAGCACCTATCGCTCA
TCCAGAACGCGGCAGCTTACTACCAGTGCCTTGTCACCAAGCGGGAGGCC
GGGACGATGTCAACCCAACAGAGGGATGCACACGCCAGGACCAACTACAA
GAACTTCACCGTTCCAAGCTTCCTGTGTTGGTGGAAGACCGTGGTCATTC
AAACCCCCCCGAGTTGGCTGACCCAAGACCTTATGGGCATGACGACCGGA
AACGATTCAGGCTCTACAACACCGACGGTCTGGTTTGGTCCAAGTACCTA
TCGTGTGGCCGTGAGATCAGGAGGGACTTCAACAGAATCTGGGACAGGCG
ATTTCCTGGTGGACGGCGACCTCCCTTCCGGAATGCAGGCCGAAGATATC
TGGGAGAATCTCCAGTTATACTTATGGTTCGAGGATAGGAGGACAGCTGG
ACGCAAGAAAGAAGTGGCTGCCGCTAATGCACGCGCGAAGTCTCAACCCA
TAGTGCTGACGGGGGACGACGACGGCGAGACAGAGGCGGGGGTGGAAGGA
GCGGGGGCGGGTGAAGGGGGGGGTAAAGAGGCGGGACCTCTCGGCCACTC
GGAAGCGGCATTGAGATACGCCACAGCAAAAGCCCTGGCACGGGTCGAGG
CTGCCAGGAATAATAAGGGGGAGGATGCAGACGTGGTGGAGGAGATTGCA
GCTGGCATCAAGCCGGAGACAGCTGACGAGGAGGAGGGGAAGGAGCCTGA
GGAAACGGCGGGGGACGCAGAAACCGAAGATGACCTAACGCGTCTGTACG
GACCCAAACCCGAACACTGGCTGCACCCGGCTTCCCTCGTCTTCGCAATT
TTCGGGAGGCCCGCTGGTACCAACGAGGATGTCGATCTGAAGCTCAAAAT
GACTAGTGGGAGGCCCAGTGGCACCAAAACGAAGGAGGCGGAGTCGGGAT
GTGCATCCGGGTCGGGATCTGCGTCCCCGACTCCGGAAGACGAGAGTAAA
CCTTGCTTGAGCACGAAAGGCCTTAAGTTGATGAACGGGGCCGGGGGTAA
GCACAGCCGAGCGGAAATGAAGACGTTGGCACACGAGGTCAACGCAGAGA
ACAAGAAGCTCAAGGGTGCAGAAGCCGACGCTGTTCTGAAACGCCGTGCC
TTGGAGGCCCTGTCCACTCCCCCCGAAGATTCCAAGAGTTCGTTGGAGTT
GGTCGAAAGTGTCAAGGCGCTGACGAGGGCTGTCGTGAGCAAGGAGCTGC
TCGACCAAGAGCAAGCCGAGCGTGCGCGTTGGAACGAGAGGGTCCGCGCA
ATGGAGAGCAAGCTAGCCCTGTGGGGCAAGATGGGGAAGGGGTCCACTGC
AGAGGCTCAGGCGTTGCAAGAAGAGCTCCTCCACGCGTATGACAACCCCG
TCGTCGCCCCCCTGTCTGTGGCAGCTCCAAGCGTGGCCGAAGGCGACGGA
GAAGGGGTAGCCGGGGGTGAGGTGGCCGGGACGGAGGGTGGGGGAGACAT
GAATGATGCGGTTGAAGTTTCGGAAGTCAGGATTTAA back to top
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