Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FSK2 |
| ProteomeId | EsuBft1017_10 |
| Protein domains | IPR027806 |
| Protein domains | PTHR22930 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Max annot lvl | 2759|Eukaryota |
| Length | 79 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.69e-33 |
| EggNOG OGs | 2E2RF@1|root,2S9YA@2759|Eukaryota |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| Description | Plant transposon protein |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1017_10a-0001 ID=EsuBft1017_10a-0001|Name=EsuBft1017_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=799bp|location=Sequence derived from alignment at Scaffold_189:555862..556992+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGAAGTCACGCTGCAGATTTTTCTGTCGACGCATGCTCAACGAGGACAC
TGCTTTCTCGAGGACGCTTGAGAGCGTGCGCAAGGACGTTGAGTGCTTCT
TCGGTATCCTGAAGGGACGTTTCAGGATCCTCAAGCTCCGCCTCGGGTAC
CGCTCCAAGGAAGACGTCGACAACATCTTCTCCACCTGCTGCATCCTGCA
CAACATGCTTCACACCTTCGACGGCATGGACGTGTTCGAGGAAGATGTCG
ACTGGGTGGGGAGCGCTGGCCTGCACGACCCCTGGGACCATGACCCACTG
ACAGACTTCACGTCTATCGGATCGACCGGGAAGCTTTCGGAGAAGGAGGG
AGGGGAGGGGGGGGAGGAAAGCAGCGAGACGATCGACCAGCACCCGGCGC
ACAGAGAGCTCAAGAAACAGCTAATCGAGAGCTTTTCTTACCGGAAGAGA
CACAACAACATTACATGGCTTTCGAGGCCCACGTGAGCCTTCTTCTTTTT
GCTACCACGCCGCTGCCTCGGGTATCTGTTGCAAGCCGTTTGTTTTTTTT
TGCTACACGCGGTGTTTAGTAAGACGTTCCCGCCTTGAAGATGGTGTTGT
CGCGCGGGTTGTTTCATATTTTCGCTGTGCTGTCTTGCACCTGTCGGACA
TGGGGTACTCTTGTATTTGTCTGCAAGAGGGACTCTGTGCGTGTCCGTGC
GTGTGGCGTTTGTGTGTTCGAGTTTCAGATTGCCTTGTTATTTATCGGTG
CCACGGACATTTGACCAGCTTCGGTTCCAACCAAAATTCTTGGTGCACC back to topprotein sequence of EsuBft1017_10a-0001 >EsuBft1017_10 ID=EsuBft1017_10|Name=EsuBft1017_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=150bp
MLNEDTAFSRTLESVRKDVECFFGILKGRFRILKLRLGYRSKEDVDNIFS
TCCILHNMLHTFDGMDVFEEDVDWVGSAGLHDPWDHDPLTDFTSIGSTGK
LSEKEGGEGGEESSETIDQHPAHRELKKQLIESFSYRKRHNNITWLSRPT back to topmRNA from alignment at Scaffold_189:555862..556992+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1017_10a-0001 ID=EsuBft1017_10a-0001|Name=EsuBft1017_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1131bp|location=Sequence derived from alignment at Scaffold_189:555862..556992+ (Ectocarpus subulatus male Bft15b)
ATGAAGTCACGCTGCAGATTTTTCTGTCGACGCATGCTCAAGTAATGTAC
ACACGGCCGCGCCGGATTCGGCACGTTTGATCGTTTGGATGCGTAGATGG
CCACAAGCAGATTGGTGTTCACAGGTCGAAGCACGACTCATTCAACCCGC
ACCAGGCAGGCGGTTCTTTCAGCCAATAGTGACCTCGCCCGCAGTGCCAA
GCTATGGTGTGGATCATGCGTTGCCCGCATGATATTCATGTATTGTAGTC
AAAGTGCGGATAACCTACATCTAAGCCCCTACCCGCCGGAATTTTTGTTT
AAAATCCTGCTGTTATTTGTCCTGCCGAACAGTGGGTGACCCTCATCGCT
CCGTCCAAGTACCCGGCGAACAGCGAGGACACTGCTTTCTCGAGGACGCT
TGAGAGCGTGCGCAAGGACGTTGAGTGCTTCTTCGGTATCCTGAAGGGAC
GTTTCAGGATCCTCAAGCTCCGCCTCGGGTACCGCTCCAAGGAAGACGTC
GACAACATCTTCTCCACCTGCTGCATCCTGCACAACATGCTTCACACCTT
CGACGGCATGGACGTGTTCGAGGAAGATGTCGACTGGGTGGGGAGCGCTG
GCCTGCACGACCCCTGGGACCATGACCCACTGACAGACTTCACGTCTATC
GGATCGACCGGGAAGCTTTCGGAGAAGGAGGGAGGGGAGGGGGGGGAGGA
AAGCAGCGAGACGATCGACCAGCACCCGGCGCACAGAGAGCTCAAGAAAC
AGCTAATCGAGAGCTTTTCTTACCGGAAGAGACACAACAACATTACATGG
CTTTCGAGGCCCACGTGAGCCTTCTTCTTTTTGCTACCACGCCGCTGCCT
CGGGTATCTGTTGCAAGCCGTTTGTTTTTTTTTGCTACACGCGGTGTTTA
GTAAGACGTTCCCGCCTTGAAGATGGTGTTGTCGCGCGGGTTGTTTCATA
TTTTCGCTGTGCTGTCTTGCACCTGTCGGACATGGGGTACTCTTGTATTT
GTCTGCAAGAGGGACTCTGTGCGTGTCCGTGCGTGTGGCGTTTGTGTGTT
CGAGTTTCAGATTGCCTTGTTATTTATCGGTGCCACGGACATTTGACCAG
CTTCGGTTCCAACCAAAATTCTTGGTGCACC back to topCoding sequence (CDS) from alignment at Scaffold_189:555862..556992+ >EsuBft1017_10a-0001 ID=EsuBft1017_10a-0001|Name=EsuBft1017_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=453bp|location=Sequence derived from alignment at Scaffold_189:555862..556992+ (Ectocarpus subulatus male Bft15b)
ATGCTCAACGAGGACACTGCTTTCTCGAGGACGCTTGAGAGCGTGCGCAA
GGACGTTGAGTGCTTCTTCGGTATCCTGAAGGGACGTTTCAGGATCCTCA
AGCTCCGCCTCGGGTACCGCTCCAAGGAAGACGTCGACAACATCTTCTCC
ACCTGCTGCATCCTGCACAACATGCTTCACACCTTCGACGGCATGGACGT
GTTCGAGGAAGATGTCGACTGGGTGGGGAGCGCTGGCCTGCACGACCCCT
GGGACCATGACCCACTGACAGACTTCACGTCTATCGGATCGACCGGGAAG
CTTTCGGAGAAGGAGGGAGGGGAGGGGGGGGAGGAAAGCAGCGAGACGAT
CGACCAGCACCCGGCGCACAGAGAGCTCAAGAAACAGCTAATCGAGAGCT
TTTCTTACCGGAAGAGACACAACAACATTACATGGCTTTCGAGGCCCACG
TGA back to top
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