EsuBft1017_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1017_10a-0001
Unique NameEsuBft1017_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_189contigScaffold_189:555862..556992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FSK2
ProteomeIdEsuBft1017_10
Protein domainsIPR027806
Protein domainsPTHR22930
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length79
Hectar predicted targeting categoryother localisation
Evalue1.69e-33
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
DescriptionPlant transposon protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1017_10aEsuBft1017_10aEctocarpus subulatus male Bft15bgeneScaffold_189 555862..556992 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1017_10a-0001-exonagat-exon-30171Ectocarpus subulatus male Bft15bexonScaffold_189 555862..555902 +
EsuBft1017_10a-0001-exonEsuBft1017_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_189 556235..556992 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1017_10a-0001-exonagat-five_prime_utr-102Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_189 555862..555894 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1017_10a-0001-cdsEsuBft1017_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_189 555895..555902 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1017_10a-0001-exonagat-three_prime_utr-173Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_189 556680..556992 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1017_10a-0001EsuBft1017_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_189 555895..556679 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1017_10a-0001 ID=EsuBft1017_10a-0001|Name=EsuBft1017_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=799bp|location=Sequence derived from alignment at Scaffold_189:555862..556992+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTCACGCTGCAGATTTTTCTGTCGACGCATGCTCAACGAGGACAC
TGCTTTCTCGAGGACGCTTGAGAGCGTGCGCAAGGACGTTGAGTGCTTCT
TCGGTATCCTGAAGGGACGTTTCAGGATCCTCAAGCTCCGCCTCGGGTAC
CGCTCCAAGGAAGACGTCGACAACATCTTCTCCACCTGCTGCATCCTGCA
CAACATGCTTCACACCTTCGACGGCATGGACGTGTTCGAGGAAGATGTCG
ACTGGGTGGGGAGCGCTGGCCTGCACGACCCCTGGGACCATGACCCACTG
ACAGACTTCACGTCTATCGGATCGACCGGGAAGCTTTCGGAGAAGGAGGG
AGGGGAGGGGGGGGAGGAAAGCAGCGAGACGATCGACCAGCACCCGGCGC
ACAGAGAGCTCAAGAAACAGCTAATCGAGAGCTTTTCTTACCGGAAGAGA
CACAACAACATTACATGGCTTTCGAGGCCCACGTGAGCCTTCTTCTTTTT
GCTACCACGCCGCTGCCTCGGGTATCTGTTGCAAGCCGTTTGTTTTTTTT
TGCTACACGCGGTGTTTAGTAAGACGTTCCCGCCTTGAAGATGGTGTTGT
CGCGCGGGTTGTTTCATATTTTCGCTGTGCTGTCTTGCACCTGTCGGACA
TGGGGTACTCTTGTATTTGTCTGCAAGAGGGACTCTGTGCGTGTCCGTGC
GTGTGGCGTTTGTGTGTTCGAGTTTCAGATTGCCTTGTTATTTATCGGTG
CCACGGACATTTGACCAGCTTCGGTTCCAACCAAAATTCTTGGTGCACC
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protein sequence of EsuBft1017_10a-0001

>EsuBft1017_10 ID=EsuBft1017_10|Name=EsuBft1017_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=150bp
MLNEDTAFSRTLESVRKDVECFFGILKGRFRILKLRLGYRSKEDVDNIFS
TCCILHNMLHTFDGMDVFEEDVDWVGSAGLHDPWDHDPLTDFTSIGSTGK
LSEKEGGEGGEESSETIDQHPAHRELKKQLIESFSYRKRHNNITWLSRPT
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mRNA from alignment at Scaffold_189:555862..556992+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1017_10a-0001 ID=EsuBft1017_10a-0001|Name=EsuBft1017_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1131bp|location=Sequence derived from alignment at Scaffold_189:555862..556992+ (Ectocarpus subulatus male Bft15b)
ATGAAGTCACGCTGCAGATTTTTCTGTCGACGCATGCTCAAGTAATGTAC
ACACGGCCGCGCCGGATTCGGCACGTTTGATCGTTTGGATGCGTAGATGG
CCACAAGCAGATTGGTGTTCACAGGTCGAAGCACGACTCATTCAACCCGC
ACCAGGCAGGCGGTTCTTTCAGCCAATAGTGACCTCGCCCGCAGTGCCAA
GCTATGGTGTGGATCATGCGTTGCCCGCATGATATTCATGTATTGTAGTC
AAAGTGCGGATAACCTACATCTAAGCCCCTACCCGCCGGAATTTTTGTTT
AAAATCCTGCTGTTATTTGTCCTGCCGAACAGTGGGTGACCCTCATCGCT
CCGTCCAAGTACCCGGCGAACAGCGAGGACACTGCTTTCTCGAGGACGCT
TGAGAGCGTGCGCAAGGACGTTGAGTGCTTCTTCGGTATCCTGAAGGGAC
GTTTCAGGATCCTCAAGCTCCGCCTCGGGTACCGCTCCAAGGAAGACGTC
GACAACATCTTCTCCACCTGCTGCATCCTGCACAACATGCTTCACACCTT
CGACGGCATGGACGTGTTCGAGGAAGATGTCGACTGGGTGGGGAGCGCTG
GCCTGCACGACCCCTGGGACCATGACCCACTGACAGACTTCACGTCTATC
GGATCGACCGGGAAGCTTTCGGAGAAGGAGGGAGGGGAGGGGGGGGAGGA
AAGCAGCGAGACGATCGACCAGCACCCGGCGCACAGAGAGCTCAAGAAAC
AGCTAATCGAGAGCTTTTCTTACCGGAAGAGACACAACAACATTACATGG
CTTTCGAGGCCCACGTGAGCCTTCTTCTTTTTGCTACCACGCCGCTGCCT
CGGGTATCTGTTGCAAGCCGTTTGTTTTTTTTTGCTACACGCGGTGTTTA
GTAAGACGTTCCCGCCTTGAAGATGGTGTTGTCGCGCGGGTTGTTTCATA
TTTTCGCTGTGCTGTCTTGCACCTGTCGGACATGGGGTACTCTTGTATTT
GTCTGCAAGAGGGACTCTGTGCGTGTCCGTGCGTGTGGCGTTTGTGTGTT
CGAGTTTCAGATTGCCTTGTTATTTATCGGTGCCACGGACATTTGACCAG
CTTCGGTTCCAACCAAAATTCTTGGTGCACC
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Coding sequence (CDS) from alignment at Scaffold_189:555862..556992+

>EsuBft1017_10a-0001 ID=EsuBft1017_10a-0001|Name=EsuBft1017_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=453bp|location=Sequence derived from alignment at Scaffold_189:555862..556992+ (Ectocarpus subulatus male Bft15b)
ATGCTCAACGAGGACACTGCTTTCTCGAGGACGCTTGAGAGCGTGCGCAA
GGACGTTGAGTGCTTCTTCGGTATCCTGAAGGGACGTTTCAGGATCCTCA
AGCTCCGCCTCGGGTACCGCTCCAAGGAAGACGTCGACAACATCTTCTCC
ACCTGCTGCATCCTGCACAACATGCTTCACACCTTCGACGGCATGGACGT
GTTCGAGGAAGATGTCGACTGGGTGGGGAGCGCTGGCCTGCACGACCCCT
GGGACCATGACCCACTGACAGACTTCACGTCTATCGGATCGACCGGGAAG
CTTTCGGAGAAGGAGGGAGGGGAGGGGGGGGAGGAAAGCAGCGAGACGAT
CGACCAGCACCCGGCGCACAGAGAGCTCAAGAAACAGCTAATCGAGAGCT
TTTCTTACCGGAAGAGACACAACAACATTACATGGCTTTCGAGGCCCACG
TGA
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