EsuBft1016_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1016_2a-0001
Unique Name	EsuBft1016_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_389	contig	Scaffold_389:651797..654600 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FI08
ProteomeId	EsuBft1016_2
Protein domains	IPR009057
Protein domains	IPR007087
Owner	apollo_admin@sb-roscoff.fr
Nb exon	7
Max annot lvl	2759\|Eukaryota
Length	183
Hectar predicted targeting category	other localisation
Evalue	3.22e-238
EggNOG OGs	2DCSR@1\|root,2S5KN@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14

Cross References

External references for this mRNA


Database	Accession
GO	0003677
GO	0046872

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1016_2a	EsuBft1016_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_389 651797..654600 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1016_2a-0001	EsuBft1016_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_389 651797..654600 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1016_2a-0001-exon	agat-exon-21227	Ectocarpus subulatus male Bft15b	exon	Scaffold_389 651797..651887 +
EsuBft1016_2a-0001-exon	agat-exon-21223	Ectocarpus subulatus male Bft15b	exon	Scaffold_389 651939..652284 +
EsuBft1016_2a-0001-exon	EsuBft1016_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_389 652342..652501 +
EsuBft1016_2a-0001-exon	agat-exon-21225	Ectocarpus subulatus male Bft15b	exon	Scaffold_389 653133..653392 +
EsuBft1016_2a-0001-exon	agat-exon-21222	Ectocarpus subulatus male Bft15b	exon	Scaffold_389 653433..653718 +
EsuBft1016_2a-0001-exon	agat-exon-21224	Ectocarpus subulatus male Bft15b	exon	Scaffold_389 653770..654059 +
EsuBft1016_2a-0001-exon	agat-exon-21226	Ectocarpus subulatus male Bft15b	exon	Scaffold_389 654198..654600 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1016_2a-0001-cds	EsuBft1016_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_389 651797..651887 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_389:651797..654600+
coding sequence from alignment at Scaffold_389:651797..654600+

spliced messenger RNA

>EsuBft1016_2a-0001 ID=EsuBft1016_2a-0001|Name=EsuBft1016_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1836bp|location=Sequence derived from alignment at Scaffold_389:651797..654600+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCGGCTGCCAGATAAGAATACTCGCAGGGGGAGGGAGGGAAGAGG
GGGGAGTGATCCCAGAGTAGAGAGTATTGGATTTGGGAGGGAGGGGGAGG
GTGGGCATTGTACGCACGCGTCGTGCCCCTGGGTGCCCCCGAGAAAAGCG
TGCGTGCCACGCAACGTGCAGCGTGCCACGAGCTGCCTGCGGTGCAGGGG
GATTGTGTCCCAGTGCAATCCCTTATCCCATGGGATATGGAAAGAGCTTG
GCAAGCTTGCAGAGTTGAAACAAAGGGGTCTGATTCTTGACCGTCACTTC
GAGACAATCAAAGCACACGTGAAGGCGGGCAACTCCGTTGCGAAGGAGCG
ATGGGACGCCATCGAGAGCGCGTGGGGGCTGAAGCAGAACGGTGTCTTCG
ACGAAGAAGAGTGGGTCACGCAGATTGACGGCGAAACCGCGCGAGGTGCT
GCACCGCCGTCTCAGCACCCACCAGCTGCTGCAGGTACCGCGAGGAGAAA
GGCCGTGGATCGCGGGAAGCAAGCTAGGGAGAGAGCTGCCAAAGGCACTT
TAGGAGGCAACATCTGCAACGCGTTCGTGATTGGCAGCCGAGGACCGATT
GAGCGGACTCGCGGTGGAGTGAAAGAGCTCATATCCGGAATAAGCTTCCC
ACCTCCGACACCGGAGTCCCACCCTTCTTGCCCTCACTGTCCCATGACCT
TCGTGAACGAGCAAGGCCTTGGGATCCACGTGGGAACGCAGCACAGCAGT
GCAAACATGCCCAACGGCGTGCGGCTGCGGCGCATGTTACGGAAGGATGT
CGGAGGGAGTGTCCTGCCGTCGGAAGCAGCCGGGCCTGGGCGTTGTTGGC
AGGTGAACGGAAGCGCTTTCTCGATCTCGATCGACTTGGATAGCGACGGC
TATATGGACCGCAAACCCAAGGACACTCGTGGGGCTGCCAAGCGCAGGCG
ATACAAGTTCAGGTTCACAGCCCACCCGGTCAACCAGCTGCGCATCCTCC
AGGACAACGCCGAAGACCTCTGGATGAAGGAGGAGCAGCGCACTCCTCTT
CAGTTCTTGGAGGATCGTCTCAAGGTTCCCTTCAGCAATATAGTGAAGTG
GGCCAAGAAGGAGAAGGAATTGGTCGCGGCGGCAGCCGATGACGCAGAGA
AGCGACTGTACAAGGGGTTCGTGGAGCGGCGGAAGAGAAAGCTGAAGGTG
TCGACCCTGTGGCTGACGATCACGTTCCGGAAGCTCGTGCGAGAGATGTA
CCCCGGGGATCAACGAGCGGCGTCCTTTTGCGCATCCTTCAGGTGGGCGC
GAAGATGGGCCAAGAGGCACAACCTGTACAAAAGACGCCGGACCAACCTC
AAGAACAAGTCTGTCGAAGAGCGGCTTCCAGAGATCCAGCGCTTCCACCG
GCTGTTTCGCAAGCTCCTGCAAAAGCCGGTGCAGCTGCTCGGCACGTGGG
ACAAGAGAGGTGCGTTGCGGGTAGCAATCTCGCAGCCCTTTCCTGGCCTT
GAGAAAAGGCAGTGCACCATGCAAGACATCTTTGGTCCGGGTGAGAAGAC
CATGCAAATTTCGGTGATTTTCCGAGGCACGGGAAAGCGGATCTCGCCGG
TGGAGAAGGCAGCGTATCACGAGGACGTGGACGTGTTTTTCCAGGTGAAC
GCGTGGGCCAACCAAAAGTTCTGTATGGAGTGGGCGAAGAGGTCCTACCG
CGAAGGCCTGATGCGCGGGCGGGGTGTGATCGATAATTCGGGTGGCTCGA
TTCTTTGTGGTTGGAGCTCAAAGCGGGTGGGTCATGGCGGAGCGTGGATG
GGTAGAAACGTGTTGAAAACGTGTTGCAAAGTATAG

protein sequence of EsuBft1016_2a-0001

>EsuBft1016_2 ID=EsuBft1016_2|Name=EsuBft1016_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=611bp
MQRLPDKNTRRGREGRGGSDPRVESIGFGREGEGGHCTHASCPWVPPRKA
CVPRNVQRATSCLRCRGIVSQCNPLSHGIWKELGKLAELKQRGLILDRHF
ETIKAHVKAGNSVAKERWDAIESAWGLKQNGVFDEEEWVTQIDGETARGA
APPSQHPPAAAGTARRKAVDRGKQARERAAKGTLGGNICNAFVIGSRGPI
ERTRGGVKELISGISFPPPTPESHPSCPHCPMTFVNEQGLGIHVGTQHSS
ANMPNGVRLRRMLRKDVGGSVLPSEAAGPGRCWQVNGSAFSISIDLDSDG
YMDRKPKDTRGAAKRRRYKFRFTAHPVNQLRILQDNAEDLWMKEEQRTPL
QFLEDRLKVPFSNIVKWAKKEKELVAAAADDAEKRLYKGFVERRKRKLKV
STLWLTITFRKLVREMYPGDQRAASFCASFRWARRWAKRHNLYKRRRTNL
KNKSVEERLPEIQRFHRLFRKLLQKPVQLLGTWDKRGALRVAISQPFPGL
EKRQCTMQDIFGPGEKTMQISVIFRGTGKRISPVEKAAYHEDVDVFFQVN
AWANQKFCMEWAKRSYREGLMRGRGVIDNSGGSILCGWSSKRVGHGGAWM
GRNVLKTCCKV

mRNA from alignment at Scaffold_389:651797..654600+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1016_2a-0001 ID=EsuBft1016_2a-0001|Name=EsuBft1016_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2804bp|location=Sequence derived from alignment at Scaffold_389:651797..654600+ (Ectocarpus subulatus male Bft15b)
ATGCAGCGGCTGCCAGATAAGAATACTCGCAGGGGGAGGGAGGGAAGAGG
GGGGAGTGATCCCAGAGTAGAGAGTATTGGATTTGGGAGGGGTACATACC
CCACATAGACTATAGACTATATCAGTATTTGTATTTTTTTAGAGGGGGAG
GGTGGGCATTGTACGCACGCGTCGTGCCCCTGGGTGCCCCCGAGAAAAGC
GTGCGTGCCACGCAACGTGCAGCGTGCCACGAGCTGCCTGCGGTGCAGGG
GGATTGTGTCCCAGTGCAATCCCTTATCCCATGGGATATGGAAAGAGCTT
GGCAAGCTTGCAGAGTTGAAACAAAGGGGTCTGATTCTTGACCGTCACTT
CGAGACAATCAAAGCACACGTGAAGGCGGGCAACTCCGTTGCGAAGGAGC
GATGGGACGCCATCGAGAGCGCGTGGGGGCTGAAGCAGAACGGTGTCTTC
GACGAAGAAGAGTGGGTCACGCAGATTGACGGCGAAACGTAGGGTATTAC
CAGCAGCACCCGCCTGTCCTCTTCATCCCAACAAGATGCCGGCAGCGCGC
GAGGTGCTGCACCGCCGTCTCAGCACCCACCAGCTGCTGCAGGTACCGCG
AGGAGAAAGGCCGTGGATCGCGGGAAGCAAGCTAGGGAGAGAGCTGCCAA
AGGCACTTTAGGAGGCAACATCTGCAACGCGTTCGTGATTGGCAGCCGAG
GACCGGTGAGCACACAGTTACTTTTCGCTACCGGTGTAGTCTACATACAC
GTTTTCGTTTTTCAAGAAAAACTCCCGTGAAAACGATGTCATGATGAGGG
CCATTTTTTTCAGTAGCGGCGCGTAAGAAAAATAAACAAAGGAGAAAGTT
CGTAGTTTTCGGGCTGGCCTCTGCTGGCAACGACTGCGTTTCGCACGCCG
TTTCTTGCTGCAGGTGCCCAAGCAAGTGGAGGAGTGTCGAGTTCTCGTCA
ACTGCGTCTTCTGGCAAGAGCCAACTCCGGTGCAAATACTCCGGAAAGTT
GTGCCTGTTTCAGATTCGTGGAATGCCGCTGCTGTGTAGACATGATAAGA
TAAGATTTTCGTCCATCCCCCTTTTTTTCAAGCAAGACCATAACATTAAA
AGAAAATAGTGGAGATAGATATTCTAGTTTGTATACCGGCGACTTTGTTT
TGGCGTCACAACAGTGCACGTTCTCTGCTTGATATTTAGTTTGAATAGTC
ACGAACGAAACAGACAGCTTTCGGCTCTCCACGGAGGTTTGAGGTCGAAA
GCGCCACACTCCATAGCGAACGATACATGACGTTACTCGTTGATTCACCC
CCCGGCAACTCCGCCCTGCTTCCACCATGCCATCAGATTGAGCGGACTCG
CGGTGGAGTGAAAGAGCTCATATCCGGAATAAGCTTCCCACCTCCGACAC
CGGAGTCCCACCCTTCTTGCCCTCACTGTCCCATGACCTTCGTGAACGAG
CAAGGCCTTGGGATCCACGTGGGAACGCAGCACAGCAGTGCAAACATGCC
CAACGGCGTGCGGCTGCGGCGCATGTTACGGAAGGATGTCGGAGGGAGTG
TCCTGCCGTCGGAAGCAGCCGGGCCTGGGCGTTGTTGGCAGGTGAAGTTC
GATCATGCGACGGGGACGGCTTAGTTTGTCCTCCAGCGGAAGCGCTTTCT
CGATCTCGATCGACTTGGATAGCGACGGCTATATGGACCGCAAACCCAAG
GACACTCGTGGGGCTGCCAAGCGCAGGCGATACAAGTTCAGGTTCACAGC
CCACCCGGTCAACCAGCTGCGCATCCTCCAGGACAACGCCGAAGACCTCT
GGATGAAGGAGGAGCAGCGCACTCCTCTTCAGTTCTTGGAGGATCGTCTC
AAGGTTCCCTTCAGCAATATAGTGAAGTGGGCCAAGAAGGAGAAGGAATT
GGTCGCGGCGGCAGCCGATGACGTAAAGTAGAGCCTCCTCGCCAAACAGC
AGCCTAAGCGGTGGTTTCCTGAGGCAGAGAAGCGACTGTACAAGGGGTTC
GTGGAGCGGCGGAAGAGAAAGCTGAAGGTGTCGACCCTGTGGCTGACGAT
CACGTTCCGGAAGCTCGTGCGAGAGATGTACCCCGGGGATCAACGAGCGG
CGTCCTTTTGCGCATCCTTCAGGTGGGCGCGAAGATGGGCCAAGAGGCAC
AACCTGTACAAAAGACGCCGGACCAACCTCAAGAACAAGTCTGTCGAAGA
GCGGCTTCCAGAGATCCAGCGCTTCCACCGGCTGTTTCGCAAGCTCCTGC
AAAAGCCGGTGCAGTAAAGGGCGCCCGACGAGTCGTACGTATCGGCGATT
ACGACGGTCGCGGAGAGAGAGTCCAGGGTTCCCAAATACGGTCAATTCTA
GCTCTGGGAGCGTTGGAATGTGGATCAAGTGTCTTTGGCATTCGTGAACA
GGCTGCTCGGCACGTGGGACAAGAGAGGTGCGTTGCGGGTAGCAATCTCG
CAGCCCTTTCCTGGCCTTGAGAAAAGGCAGTGCACCATGCAAGACATCTT
TGGTCCGGGTGAGAAGACCATGCAAATTTCGGTGATTTTCCGAGGCACGG
GAAAGCGGATCTCGCCGGTGGAGAAGGCAGCGTATCACGAGGACGTGGAC
GTGTTTTTCCAGGTGAACGCGTGGGCCAACCAAAAGTTCTGTATGGAGTG
GGCGAAGAGGTCCTACCGCGAAGGCCTGATGCGCGGGCGGGGTGTGATCG
ATAATTCGGGTGGCTCGATTCTTTGTGGTTGGAGCTCAAAGCGGGTGGGT
CATGGCGGAGCGTGGATGGGTAGAAACGTGTTGAAAACGTGTTGCAAAGT
ATAG

Coding sequence (CDS) from alignment at Scaffold_389:651797..654600+

>EsuBft1016_2a-0001 ID=EsuBft1016_2a-0001|Name=EsuBft1016_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1836bp|location=Sequence derived from alignment at Scaffold_389:651797..654600+ (Ectocarpus subulatus male Bft15b)
ATGCAGCGGCTGCCAGATAAGAATACTCGCAGGGGGAGGGAGGGAAGAGG
GGGGAGTGATCCCAGAGTAGAGAGTATTGGATTTGGGAGGGAGGGGGAGG
GTGGGCATTGTACGCACGCGTCGTGCCCCTGGGTGCCCCCGAGAAAAGCG
TGCGTGCCACGCAACGTGCAGCGTGCCACGAGCTGCCTGCGGTGCAGGGG
GATTGTGTCCCAGTGCAATCCCTTATCCCATGGGATATGGAAAGAGCTTG
GCAAGCTTGCAGAGTTGAAACAAAGGGGTCTGATTCTTGACCGTCACTTC
GAGACAATCAAAGCACACGTGAAGGCGGGCAACTCCGTTGCGAAGGAGCG
ATGGGACGCCATCGAGAGCGCGTGGGGGCTGAAGCAGAACGGTGTCTTCG
ACGAAGAAGAGTGGGTCACGCAGATTGACGGCGAAACCGCGCGAGGTGCT
GCACCGCCGTCTCAGCACCCACCAGCTGCTGCAGGTACCGCGAGGAGAAA
GGCCGTGGATCGCGGGAAGCAAGCTAGGGAGAGAGCTGCCAAAGGCACTT
TAGGAGGCAACATCTGCAACGCGTTCGTGATTGGCAGCCGAGGACCGATT
GAGCGGACTCGCGGTGGAGTGAAAGAGCTCATATCCGGAATAAGCTTCCC
ACCTCCGACACCGGAGTCCCACCCTTCTTGCCCTCACTGTCCCATGACCT
TCGTGAACGAGCAAGGCCTTGGGATCCACGTGGGAACGCAGCACAGCAGT
GCAAACATGCCCAACGGCGTGCGGCTGCGGCGCATGTTACGGAAGGATGT
CGGAGGGAGTGTCCTGCCGTCGGAAGCAGCCGGGCCTGGGCGTTGTTGGC
AGGTGAACGGAAGCGCTTTCTCGATCTCGATCGACTTGGATAGCGACGGC
TATATGGACCGCAAACCCAAGGACACTCGTGGGGCTGCCAAGCGCAGGCG
ATACAAGTTCAGGTTCACAGCCCACCCGGTCAACCAGCTGCGCATCCTCC
AGGACAACGCCGAAGACCTCTGGATGAAGGAGGAGCAGCGCACTCCTCTT
CAGTTCTTGGAGGATCGTCTCAAGGTTCCCTTCAGCAATATAGTGAAGTG
GGCCAAGAAGGAGAAGGAATTGGTCGCGGCGGCAGCCGATGACGCAGAGA
AGCGACTGTACAAGGGGTTCGTGGAGCGGCGGAAGAGAAAGCTGAAGGTG
TCGACCCTGTGGCTGACGATCACGTTCCGGAAGCTCGTGCGAGAGATGTA
CCCCGGGGATCAACGAGCGGCGTCCTTTTGCGCATCCTTCAGGTGGGCGC
GAAGATGGGCCAAGAGGCACAACCTGTACAAAAGACGCCGGACCAACCTC
AAGAACAAGTCTGTCGAAGAGCGGCTTCCAGAGATCCAGCGCTTCCACCG
GCTGTTTCGCAAGCTCCTGCAAAAGCCGGTGCAGCTGCTCGGCACGTGGG
ACAAGAGAGGTGCGTTGCGGGTAGCAATCTCGCAGCCCTTTCCTGGCCTT
GAGAAAAGGCAGTGCACCATGCAAGACATCTTTGGTCCGGGTGAGAAGAC
CATGCAAATTTCGGTGATTTTCCGAGGCACGGGAAAGCGGATCTCGCCGG
TGGAGAAGGCAGCGTATCACGAGGACGTGGACGTGTTTTTCCAGGTGAAC
GCGTGGGCCAACCAAAAGTTCTGTATGGAGTGGGCGAAGAGGTCCTACCG
CGAAGGCCTGATGCGCGGGCGGGGTGTGATCGATAATTCGGGTGGCTCGA
TTCTTTGTGGTTGGAGCTCAAAGCGGGTGGGTCATGGCGGAGCGTGGATG
GGTAGAAACGTGTTGAAAACGTGTTGCAAAGTATAG