EsuBft1013_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1013_12a-0001
Unique Name	EsuBft1013_12a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_373	contig	Scaffold_373:615325..617193 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FIC6
ProteomeId	EsuBft1013_12
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Max annot lvl	2880.D7FIC6\|-
Length	170
Hectar predicted targeting category	other localisation
Evalue	2.68e-41
EggNOG OGs	2EJXG@1\|root,2SPZB@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1013_12a	EsuBft1013_12a	Ectocarpus subulatus male Bft15b	gene	Scaffold_373 615325..617193 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1013_12a-0001-exon	EsuBft1013_12a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_373 615325..616996 -
EsuBft1013_12a-0001-exon	agat-exon-63059	Ectocarpus subulatus male Bft15b	exon	Scaffold_373 617157..617193 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1013_12a-0001-exon	agat-three_prime_utr-140	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_373 615325..616730 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1013_12a-0001-cds	EsuBft1013_12a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_373 616731..616996 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1013_12a-0001	EsuBft1013_12	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_373 616731..617193 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_373:615325..617193-
coding sequence from alignment at Scaffold_373:615325..617193-

spliced messenger RNA

>EsuBft1013_12a-0001 ID=EsuBft1013_12a-0001|Name=EsuBft1013_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1709bp|location=Sequence derived from alignment at Scaffold_373:615325..617193- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTAAAAAGTGGCTAAGAAATGGCATAAAAAGCGATATTGAGCCACT
GCTGGGAAAGGTTGGCGGATCGGAAAAATCAGAGTGGTCCACAAAAAAAG
AGGAACACGCTTGCAAGACTGCTGAACACGACAGCAAAGCTTCTGGCCTC
GCCCTCCACAAGGAAATGACCGAGTCCCACGCCGAATCCTCGAAGAAAGT
TGTGGAGGAGGAGAAAGAAAAAGAAGAGGGTTATCAGACGAGAGTTAGAT
TCCTGCGCAAAATGTTGGCCGGCATCGAGAAGGAAATGTTTGGCGACGAA
TAACAACCATATGCACTCCCGGAAAAGTGTTACCTACCGTGCAATCGTCG
AATATTATGCATGCGTGACGGGGGGGGGGCGGGGGGGGGTTTTATTTTTA
TCGTTGGGCATGGTTGAGTCAACGTCTTCGTTTCGTCGCAGCATTGAGGA
TACGTGCGCCTCCGCAGAGACGTGTGGGTTGTTTGGTTGGCAACAACACT
TTGAGAGGATGCCTTGCGGCAACAAAGGAGTATCAACGAAAAAATACGGT
GGAAGAACGCCGAGACCGTTGTGGTTCACGGGCAAGTTGCTGTGCCTGTA
TTCAACGAACACGAGGGCACGCTTTTTGTTTTTCTCTCCCTGCTGCAGGG
CTTGCTTGCTGCGAGGGTCGTAGCCTTCTATTTTTTTTTGGGCCAGGGGG
GGGAGGTTTCATTTTTATAGTTGGGCATGGTTGAGTCAACGTCTTCGTCT
TTTCGTAGCATCATTTTTTTTAGGATACGTGCGCCTCCGCAGAGGCGTGT
AGGTTGTTTGGTTGGCAACAACACTTTGAGAGGATGCCTTGCGGCAACAA
AGGAGTATCAACGAAAAAATACGGTGGAAGAACGCCGAAGACATTGCTGT
CTTGCGGGTAACCTGCCGTGCCGGCAATCTGCGGACATGCATATCGTTTG
GTGTTTTCCTATTTGCAAGACTTGTTCTTGCAACCCAATACTACGTTGGG
TGTTGGCGGGAACTCTGAGGCACGCTTGGGTTCCGCAAATTTGGAGCCTT
GCAATTTTTCCCGTCTCCGCGCATGCTCACTTGAAGCGCAGGAATGTGTT
CGCGATGGGATTCGACAAGACCCCAATTTTTAGCGTGTGTGTGGGTCTCC
TTCAGGTCTGCAACCTGGAGCAATGTTTCACCCACGCGACGAATATTTAA
TGCAGGGATGCAGAGACATCATTAAAAGTTGTATCAACGACAACAACGTT
TTCGATTCACACTCTCCTAATTAGGAAAAAAAAAAGTCGAACATGCCCAC
ACTTTTAATGCCCTAGGTAAAACAAGCACCCTCCGAGACCTACCGGACCC
CGCTTTCATCCGCACACGATGCATGTTAACCATAAAGTGTTGCCGGCATG
AACACACACATTACGAACCAAGTGTACCCGGACACATCTGGTCAGAACGC
TCCACACCGACACCCACAAAACATGTCAGCGAGAATCAACATGTCACACA
TCACACCCCCCACCTCTCCCCGGGATGCGCCGACACCCTAGCACTAACAC
CCAAAACACGTTGTTCCAGCGCCCTCCGCCCTCTACATTGAGGTACCTCC
CTCCCGCGCCCCTCCCTCCCGCGCCGCTATCGTCCCTTTCACGCGTCTCG
TCATCCCGTGGAAACTAGCCTACTTCTGCCGCCATCCGCTCATGTAGCCC
CTAACCCCC

protein sequence of EsuBft1013_12a-0001

>EsuBft1013_12 ID=EsuBft1013_12|Name=EsuBft1013_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=100bp
MLKKWLRNGIKSDIEPLLGKVGGSEKSEWSTKKEEHACKTAEHDSKASGL
ALHKEMTESHAESSKKVVEEEKEKEEGYQTRVRFLRKMLAGIEKEMFGDE

mRNA from alignment at Scaffold_373:615325..617193-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1013_12a-0001 ID=EsuBft1013_12a-0001|Name=EsuBft1013_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1869bp|location=Sequence derived from alignment at Scaffold_373:615325..617193- (Ectocarpus subulatus male Bft15b)
ATGCTTAAAAAGTGGCTAAGAAATGGCATAAAAAGCGGTAAAAAGGCGCG
TACTTTTTCAAAATTTACGGAAAGCGCCACGGCTCGACGTACACACACCG
GTCCCGACCAGGCGAGAGACCCAAGGACTCCCACAACAGACGTGATAAAC
CCACATCAAGAACAACAACGCCGCTGCCATAAAAACCGCACTCAAAGATA
TTGAGCCACTGCTGGGAAAGGTTGGCGGATCGGAAAAATCAGAGTGGTCC
ACAAAAAAAGAGGAACACGCTTGCAAGACTGCTGAACACGACAGCAAAGC
TTCTGGCCTCGCCCTCCACAAGGAAATGACCGAGTCCCACGCCGAATCCT
CGAAGAAAGTTGTGGAGGAGGAGAAAGAAAAAGAAGAGGGTTATCAGACG
AGAGTTAGATTCCTGCGCAAAATGTTGGCCGGCATCGAGAAGGAAATGTT
TGGCGACGAATAACAACCATATGCACTCCCGGAAAAGTGTTACCTACCGT
GCAATCGTCGAATATTATGCATGCGTGACGGGGGGGGGGCGGGGGGGGGT
TTTATTTTTATCGTTGGGCATGGTTGAGTCAACGTCTTCGTTTCGTCGCA
GCATTGAGGATACGTGCGCCTCCGCAGAGACGTGTGGGTTGTTTGGTTGG
CAACAACACTTTGAGAGGATGCCTTGCGGCAACAAAGGAGTATCAACGAA
AAAATACGGTGGAAGAACGCCGAGACCGTTGTGGTTCACGGGCAAGTTGC
TGTGCCTGTATTCAACGAACACGAGGGCACGCTTTTTGTTTTTCTCTCCC
TGCTGCAGGGCTTGCTTGCTGCGAGGGTCGTAGCCTTCTATTTTTTTTTG
GGCCAGGGGGGGGAGGTTTCATTTTTATAGTTGGGCATGGTTGAGTCAAC
GTCTTCGTCTTTTCGTAGCATCATTTTTTTTAGGATACGTGCGCCTCCGC
AGAGGCGTGTAGGTTGTTTGGTTGGCAACAACACTTTGAGAGGATGCCTT
GCGGCAACAAAGGAGTATCAACGAAAAAATACGGTGGAAGAACGCCGAAG
ACATTGCTGTCTTGCGGGTAACCTGCCGTGCCGGCAATCTGCGGACATGC
ATATCGTTTGGTGTTTTCCTATTTGCAAGACTTGTTCTTGCAACCCAATA
CTACGTTGGGTGTTGGCGGGAACTCTGAGGCACGCTTGGGTTCCGCAAAT
TTGGAGCCTTGCAATTTTTCCCGTCTCCGCGCATGCTCACTTGAAGCGCA
GGAATGTGTTCGCGATGGGATTCGACAAGACCCCAATTTTTAGCGTGTGT
GTGGGTCTCCTTCAGGTCTGCAACCTGGAGCAATGTTTCACCCACGCGAC
GAATATTTAATGCAGGGATGCAGAGACATCATTAAAAGTTGTATCAACGA
CAACAACGTTTTCGATTCACACTCTCCTAATTAGGAAAAAAAAAAGTCGA
ACATGCCCACACTTTTAATGCCCTAGGTAAAACAAGCACCCTCCGAGACC
TACCGGACCCCGCTTTCATCCGCACACGATGCATGTTAACCATAAAGTGT
TGCCGGCATGAACACACACATTACGAACCAAGTGTACCCGGACACATCTG
GTCAGAACGCTCCACACCGACACCCACAAAACATGTCAGCGAGAATCAAC
ATGTCACACATCACACCCCCCACCTCTCCCCGGGATGCGCCGACACCCTA
GCACTAACACCCAAAACACGTTGTTCCAGCGCCCTCCGCCCTCTACATTG
AGGTACCTCCCTCCCGCGCCCCTCCCTCCCGCGCCGCTATCGTCCCTTTC
ACGCGTCTCGTCATCCCGTGGAAACTAGCCTACTTCTGCCGCCATCCGCT
CATGTAGCCCCTAACCCCC

Coding sequence (CDS) from alignment at Scaffold_373:615325..617193-

>EsuBft1013_12a-0001 ID=EsuBft1013_12a-0001|Name=EsuBft1013_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=303bp|location=Sequence derived from alignment at Scaffold_373:615325..617193- (Ectocarpus subulatus male Bft15b)
ATGCTTAAAAAGTGGCTAAGAAATGGCATAAAAAGCGATATTGAGCCACT
GCTGGGAAAGGTTGGCGGATCGGAAAAATCAGAGTGGTCCACAAAAAAAG
AGGAACACGCTTGCAAGACTGCTGAACACGACAGCAAAGCTTCTGGCCTC
GCCCTCCACAAGGAAATGACCGAGTCCCACGCCGAATCCTCGAAGAAAGT
TGTGGAGGAGGAGAAAGAAAAAGAAGAGGGTTATCAGACGAGAGTTAGAT
TCCTGCGCAAAATGTTGGCCGGCATCGAGAAGGAAATGTTTGGCGACGAA
TAA