EsuBft1013_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1013_12a-0001
Unique NameEsuBft1013_12a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_373contigScaffold_373:615325..617193 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FIC6
ProteomeIdEsuBft1013_12
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2880.D7FIC6|-
Length170
Hectar predicted targeting categoryother localisation
Evalue2.68e-41
EggNOG OGs2EJXG@1|root,2SPZB@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1013_12aEsuBft1013_12aEctocarpus subulatus male Bft15bgeneScaffold_373 615325..617193 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1013_12a-0001-exonEsuBft1013_12a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_373 615325..616996 -
EsuBft1013_12a-0001-exonagat-exon-63059Ectocarpus subulatus male Bft15bexonScaffold_373 617157..617193 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1013_12a-0001-exonagat-three_prime_utr-140Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_373 615325..616730 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1013_12a-0001-cdsEsuBft1013_12a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_373 616731..616996 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1013_12a-0001EsuBft1013_12Ectocarpus subulatus male Bft15bpolypeptideScaffold_373 616731..617193 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1013_12a-0001 ID=EsuBft1013_12a-0001|Name=EsuBft1013_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1709bp|location=Sequence derived from alignment at Scaffold_373:615325..617193- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTAAAAAGTGGCTAAGAAATGGCATAAAAAGCGATATTGAGCCACT
GCTGGGAAAGGTTGGCGGATCGGAAAAATCAGAGTGGTCCACAAAAAAAG
AGGAACACGCTTGCAAGACTGCTGAACACGACAGCAAAGCTTCTGGCCTC
GCCCTCCACAAGGAAATGACCGAGTCCCACGCCGAATCCTCGAAGAAAGT
TGTGGAGGAGGAGAAAGAAAAAGAAGAGGGTTATCAGACGAGAGTTAGAT
TCCTGCGCAAAATGTTGGCCGGCATCGAGAAGGAAATGTTTGGCGACGAA
TAACAACCATATGCACTCCCGGAAAAGTGTTACCTACCGTGCAATCGTCG
AATATTATGCATGCGTGACGGGGGGGGGGCGGGGGGGGGTTTTATTTTTA
TCGTTGGGCATGGTTGAGTCAACGTCTTCGTTTCGTCGCAGCATTGAGGA
TACGTGCGCCTCCGCAGAGACGTGTGGGTTGTTTGGTTGGCAACAACACT
TTGAGAGGATGCCTTGCGGCAACAAAGGAGTATCAACGAAAAAATACGGT
GGAAGAACGCCGAGACCGTTGTGGTTCACGGGCAAGTTGCTGTGCCTGTA
TTCAACGAACACGAGGGCACGCTTTTTGTTTTTCTCTCCCTGCTGCAGGG
CTTGCTTGCTGCGAGGGTCGTAGCCTTCTATTTTTTTTTGGGCCAGGGGG
GGGAGGTTTCATTTTTATAGTTGGGCATGGTTGAGTCAACGTCTTCGTCT
TTTCGTAGCATCATTTTTTTTAGGATACGTGCGCCTCCGCAGAGGCGTGT
AGGTTGTTTGGTTGGCAACAACACTTTGAGAGGATGCCTTGCGGCAACAA
AGGAGTATCAACGAAAAAATACGGTGGAAGAACGCCGAAGACATTGCTGT
CTTGCGGGTAACCTGCCGTGCCGGCAATCTGCGGACATGCATATCGTTTG
GTGTTTTCCTATTTGCAAGACTTGTTCTTGCAACCCAATACTACGTTGGG
TGTTGGCGGGAACTCTGAGGCACGCTTGGGTTCCGCAAATTTGGAGCCTT
GCAATTTTTCCCGTCTCCGCGCATGCTCACTTGAAGCGCAGGAATGTGTT
CGCGATGGGATTCGACAAGACCCCAATTTTTAGCGTGTGTGTGGGTCTCC
TTCAGGTCTGCAACCTGGAGCAATGTTTCACCCACGCGACGAATATTTAA
TGCAGGGATGCAGAGACATCATTAAAAGTTGTATCAACGACAACAACGTT
TTCGATTCACACTCTCCTAATTAGGAAAAAAAAAAGTCGAACATGCCCAC
ACTTTTAATGCCCTAGGTAAAACAAGCACCCTCCGAGACCTACCGGACCC
CGCTTTCATCCGCACACGATGCATGTTAACCATAAAGTGTTGCCGGCATG
AACACACACATTACGAACCAAGTGTACCCGGACACATCTGGTCAGAACGC
TCCACACCGACACCCACAAAACATGTCAGCGAGAATCAACATGTCACACA
TCACACCCCCCACCTCTCCCCGGGATGCGCCGACACCCTAGCACTAACAC
CCAAAACACGTTGTTCCAGCGCCCTCCGCCCTCTACATTGAGGTACCTCC
CTCCCGCGCCCCTCCCTCCCGCGCCGCTATCGTCCCTTTCACGCGTCTCG
TCATCCCGTGGAAACTAGCCTACTTCTGCCGCCATCCGCTCATGTAGCCC
CTAACCCCC
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protein sequence of EsuBft1013_12a-0001

>EsuBft1013_12 ID=EsuBft1013_12|Name=EsuBft1013_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=100bp
MLKKWLRNGIKSDIEPLLGKVGGSEKSEWSTKKEEHACKTAEHDSKASGL
ALHKEMTESHAESSKKVVEEEKEKEEGYQTRVRFLRKMLAGIEKEMFGDE
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mRNA from alignment at Scaffold_373:615325..617193-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1013_12a-0001 ID=EsuBft1013_12a-0001|Name=EsuBft1013_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1869bp|location=Sequence derived from alignment at Scaffold_373:615325..617193- (Ectocarpus subulatus male Bft15b)
ATGCTTAAAAAGTGGCTAAGAAATGGCATAAAAAGCGGTAAAAAGGCGCG
TACTTTTTCAAAATTTACGGAAAGCGCCACGGCTCGACGTACACACACCG
GTCCCGACCAGGCGAGAGACCCAAGGACTCCCACAACAGACGTGATAAAC
CCACATCAAGAACAACAACGCCGCTGCCATAAAAACCGCACTCAAAGATA
TTGAGCCACTGCTGGGAAAGGTTGGCGGATCGGAAAAATCAGAGTGGTCC
ACAAAAAAAGAGGAACACGCTTGCAAGACTGCTGAACACGACAGCAAAGC
TTCTGGCCTCGCCCTCCACAAGGAAATGACCGAGTCCCACGCCGAATCCT
CGAAGAAAGTTGTGGAGGAGGAGAAAGAAAAAGAAGAGGGTTATCAGACG
AGAGTTAGATTCCTGCGCAAAATGTTGGCCGGCATCGAGAAGGAAATGTT
TGGCGACGAATAACAACCATATGCACTCCCGGAAAAGTGTTACCTACCGT
GCAATCGTCGAATATTATGCATGCGTGACGGGGGGGGGGCGGGGGGGGGT
TTTATTTTTATCGTTGGGCATGGTTGAGTCAACGTCTTCGTTTCGTCGCA
GCATTGAGGATACGTGCGCCTCCGCAGAGACGTGTGGGTTGTTTGGTTGG
CAACAACACTTTGAGAGGATGCCTTGCGGCAACAAAGGAGTATCAACGAA
AAAATACGGTGGAAGAACGCCGAGACCGTTGTGGTTCACGGGCAAGTTGC
TGTGCCTGTATTCAACGAACACGAGGGCACGCTTTTTGTTTTTCTCTCCC
TGCTGCAGGGCTTGCTTGCTGCGAGGGTCGTAGCCTTCTATTTTTTTTTG
GGCCAGGGGGGGGAGGTTTCATTTTTATAGTTGGGCATGGTTGAGTCAAC
GTCTTCGTCTTTTCGTAGCATCATTTTTTTTAGGATACGTGCGCCTCCGC
AGAGGCGTGTAGGTTGTTTGGTTGGCAACAACACTTTGAGAGGATGCCTT
GCGGCAACAAAGGAGTATCAACGAAAAAATACGGTGGAAGAACGCCGAAG
ACATTGCTGTCTTGCGGGTAACCTGCCGTGCCGGCAATCTGCGGACATGC
ATATCGTTTGGTGTTTTCCTATTTGCAAGACTTGTTCTTGCAACCCAATA
CTACGTTGGGTGTTGGCGGGAACTCTGAGGCACGCTTGGGTTCCGCAAAT
TTGGAGCCTTGCAATTTTTCCCGTCTCCGCGCATGCTCACTTGAAGCGCA
GGAATGTGTTCGCGATGGGATTCGACAAGACCCCAATTTTTAGCGTGTGT
GTGGGTCTCCTTCAGGTCTGCAACCTGGAGCAATGTTTCACCCACGCGAC
GAATATTTAATGCAGGGATGCAGAGACATCATTAAAAGTTGTATCAACGA
CAACAACGTTTTCGATTCACACTCTCCTAATTAGGAAAAAAAAAAGTCGA
ACATGCCCACACTTTTAATGCCCTAGGTAAAACAAGCACCCTCCGAGACC
TACCGGACCCCGCTTTCATCCGCACACGATGCATGTTAACCATAAAGTGT
TGCCGGCATGAACACACACATTACGAACCAAGTGTACCCGGACACATCTG
GTCAGAACGCTCCACACCGACACCCACAAAACATGTCAGCGAGAATCAAC
ATGTCACACATCACACCCCCCACCTCTCCCCGGGATGCGCCGACACCCTA
GCACTAACACCCAAAACACGTTGTTCCAGCGCCCTCCGCCCTCTACATTG
AGGTACCTCCCTCCCGCGCCCCTCCCTCCCGCGCCGCTATCGTCCCTTTC
ACGCGTCTCGTCATCCCGTGGAAACTAGCCTACTTCTGCCGCCATCCGCT
CATGTAGCCCCTAACCCCC
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Coding sequence (CDS) from alignment at Scaffold_373:615325..617193-

>EsuBft1013_12a-0001 ID=EsuBft1013_12a-0001|Name=EsuBft1013_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=303bp|location=Sequence derived from alignment at Scaffold_373:615325..617193- (Ectocarpus subulatus male Bft15b)
ATGCTTAAAAAGTGGCTAAGAAATGGCATAAAAAGCGATATTGAGCCACT
GCTGGGAAAGGTTGGCGGATCGGAAAAATCAGAGTGGTCCACAAAAAAAG
AGGAACACGCTTGCAAGACTGCTGAACACGACAGCAAAGCTTCTGGCCTC
GCCCTCCACAAGGAAATGACCGAGTCCCACGCCGAATCCTCGAAGAAAGT
TGTGGAGGAGGAGAAAGAAAAAGAAGAGGGTTATCAGACGAGAGTTAGAT
TCCTGCGCAAAATGTTGGCCGGCATCGAGAAGGAAATGTTTGGCGACGAA
TAA
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